mRNA_H-paniculata_contig8071.16079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8071.16079.1
Unique NamemRNA_H-paniculata_contig8071.16079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: D7FXQ9_ECTSI (Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ9_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 5.070e-62
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            VQVWKDVDGMMTADPRAVP AVPVPCVSYEEAAELAYFGANILHPVSMRP +KT LPVRIKNSYNPSHPGTVIA NRDCGE LVTAITFKKGVELVDIVSTRMLGQ G
Sbjct:  322 VQVWKDVDGMMTADPRAVPGAVPVPCVSYEEAAELAYFGANILHPVSMRPVIKTGLPVRIKNSYNPSHPGTVIAANRDCGETLVTAITFKKGVELVDIVSTRMLGQSG 429
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A6H5JA47_9PHAE (Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA47_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.020e-60
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            VQVWKDVDGMMTADPRAVP AVPVPCVSYEEAAELAYFGANILHPVSMRP +KT LPVRIKNSYNPSHPGTVIA  RDCGE LVTAITFKKGVELVDIVSTRMLGQ G
Sbjct:  345 VQVWKDVDGMMTADPRAVPGAVPVPCVSYEEAAELAYFGANILHPVSMRPVIKTGLPVRIKNSYNPSHPGTVIAAKRDCGETLVTAITFKKGVELVDIVSTRMLGQSG 452
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A835ZI76_9STRA (Aspartokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI76_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.110e-54
Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            VQVWKDVDGMMTADPRAV  AVPVPCVSYEEAAELAYFGA ILHPV+MRPA +  +PVRIKNSYNPSHPGT I  +R CGE LVTA+TFK+GVEL+D+VSTRMLGQ G
Sbjct:  237 VQVWKDVDGMMTADPRAVKRAVPVPCVSYEEAAELAYFGAKILHPVAMRPAQRAGIPVRIKNSYNPSHPGTFITGSRVCGEALVTAVTFKEGVELIDVVSTRMLGQVG 344
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A1X6NKZ0_PORUM (Aspartokinase (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKZ0_PORUM)

HSP 1 Score: 155 bits (391), Expect = 1.460e-43
Identity = 75/109 (68.81%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDC-GEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            VQVWKDVDG+++ DPR V +AVPVP V +EEAAE+AYFGA +LHP++M PAM++N+PVR+KNSYNPSHPGTVI   R    E  VTAI+ K+GV+LVDIVSTRMLG YG
Sbjct:  246 VQVWKDVDGILSTDPRIVKSAVPVPSVMFEEAAEMAYFGAKVLHPIAMMPAMRSNIPVRVKNSYNPSHPGTVIVRERAVHAENPVTAISVKRGVQLVDIVSTRMLGAYG 354
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A7S0C2F1_9STRA (Aspartokinase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2F1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 7.970e-43
Identity = 75/108 (69.44%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            +QVWKDVDG++T+DPR VP A PV  VS+EEA+ELAYFGA +LHP++MRPAMK N+PVR+KNSYNPSH GTVI    D G  LVTAIT K+ V+++DIVSTRMLG YG
Sbjct:  192 IQVWKDVDGILTSDPRVVPNASPVRFVSFEEASELAYFGAQVLHPIAMRPAMKKNIPVRVKNSYNPSHEGTVIKKEHD-GTHLVTAITCKRNVKMLDIVSTRMLGAYG 298
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A172E6T9_PHATR (Aspartate kinase (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A172E6T9_PHATR)

HSP 1 Score: 147 bits (371), Expect = 8.980e-43
Identity = 71/107 (66.36%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQY 327
            +QVWKDVDG++T+DPR VP AVPV  VSYEEA+ELAYFGA +LHP++M+PAMK N+PVR+KNSYNPS  GT+I N ++  E LVTAIT+K+ ++L+DI ST+MLG Y
Sbjct:   83 IQVWKDVDGILTSDPRLVPNAVPVGDVSYEEASELAYFGAQVLHPIAMQPAMKHNVPVRVKNSYNPSAVGTIIRNRKET-ERLVTAITYKRDIKLMDIESTQMLGAY 188
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A7S2U5U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5U2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.310e-42
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            VQVWKDVDG++++DPR VP A+PVP VSYEEA+E+AYFGA +LHP++M P MK N+PVR+KNSYNPS  GTVI N       LVTAIT+K+ ++L+DI ST MLG YG
Sbjct:    1 VQVWKDVDGILSSDPRLVPNAIPVPDVSYEEASEMAYFGAKVLHPIAMVPVMKYNIPVRVKNSYNPSAVGTVIVNRDTPSNRLVTAITYKRNIKLLDIQSTNMLGAYG 108
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A4D9D6A5_9STRA (Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6A5_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.640e-41
Identity = 75/108 (69.44%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            +QVWKDV+G+MTA+P+ V  AVPVP VS+EEA+ELAYFGA ILHP+SM PAM+ N+ VR+KNSYNP HPGTVI  ++D  + LVTAIT K+ VEL+DIVST MLGQYG
Sbjct:  214 IQVWKDVNGIMTANPKVVSNAVPVPFVSFEEASELAYFGAEILHPISMVPAMRYNIQVRVKNSYNPDHPGTVILADKDYTQ-LVTAITSKRNVELLDIVSTWMLGQYG 320
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A7J7ICL2_9RHOD (Aspartokinase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICL2_9RHOD)

HSP 1 Score: 149 bits (376), Expect = 5.340e-41
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNRDC-GEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            VQVWKDVDG+MT DPR VP A+PV  +S+EEAAELAYFGA +LHPV+M+PAM+ N+PVR+KNSYNP  PGTVI        E  VTA++ K+GV+LVDIVSTRMLG YG
Sbjct:  178 VQVWKDVDGIMTTDPRLVPNAIPVADMSFEEAAELAYFGAKVLHPVAMQPAMRFNIPVRVKNSYNPEAPGTVILRRESLPSERPVTALSVKRGVQLVDIVSTRMLGAYG 286
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BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Match: A0A7S2DCP2_9STRA (Aspartokinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCP2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.000e-40
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:    7 VQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSMRPAMKTNLPVRIKNSYNPSHPGTVIANNR-----------DCGEVLVTAITFKKGVELVDIVSTRMLGQYG 330
            +QVWKDVDGM+TADPR VP A PVP V++EEA+ELAYFGA ILHP+SM PAMK+N+PVR+KNSYNPSHPGT+I+  R           D G  LVTAIT K    ++D+VS RMLGQYG
Sbjct:  279 IQVWKDVDGMLTADPRIVPKARPVPSVTFEEASELAYFGAKILHPISMLPAMKSNIPVRVKNSYNPSHPGTLISAERCYLDAKHAADHDDG-TLVTAITSKSNQMVLDVVSNRMLGQYG 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8071.16079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXQ9_ECTSI5.070e-6293.52Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JA47_9PHAE2.020e-6092.59Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A835ZI76_9STRA4.110e-5481.48Aspartokinase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A1X6NKZ0_PORUM1.460e-4368.81Aspartokinase (Fragment) n=1 Tax=Porphyra umbilica... [more]
A0A7S0C2F1_9STRA7.970e-4369.44Aspartokinase n=1 Tax=Proboscia inermis TaxID=4202... [more]
A0A172E6T9_PHATR8.980e-4366.36Aspartate kinase (Fragment) n=1 Tax=Phaeodactylum ... [more]
A0A7S2U5U2_9STRA2.310e-4264.81Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A4D9D6A5_9STRA3.640e-4169.44Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1... [more]
A0A7J7ICL2_9RHOD5.340e-4167.89Aspartokinase n=1 Tax=Cyanidiococcus yangmingshane... [more]
A0A7S2DCP2_9STRA1.000e-4064.71Aspartokinase n=1 Tax=Dictyocha speculum TaxID=356... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8071contigH-paniculata_contig8071:7076..8152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.0
Seed ortholog evalue2.3e-51
Seed eggNOG ortholog2880.D7FXQ9
Preferred nameHOM3
KEGG rclassRC00002,RC00043
KEGG koko:K00928
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.aspartate kinase activity
EggNOG OGsCOG0527@1,KOG0456@2759
EC2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.5417075-CDS-H-paniculata_contig8071:7075..72161622931008.5417075-CDS-H-paniculata_contig8071:7075..7216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8071 7076..7216 +
1691481548.7505422-CDS-H-paniculata_contig8071:7075..72161691481548.7505422-CDS-H-paniculata_contig8071:7075..7216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8071 7076..7216 +
1622931008.5549212-CDS-H-paniculata_contig8071:7960..81521622931008.5549212-CDS-H-paniculata_contig8071:7960..8152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8071 7961..8152 +
1691481548.7650928-CDS-H-paniculata_contig8071:7960..81521691481548.7650928-CDS-H-paniculata_contig8071:7960..8152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8071 7961..8152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8071.16079.1prot_H-paniculata_contig8071.16079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8071 7076..8152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8071.16079.1

>prot_H-paniculata_contig8071.16079.1 ID=prot_H-paniculata_contig8071.16079.1|Name=mRNA_H-paniculata_contig8071.16079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MNVQVWKDVDGMMTADPRAVPAAVPVPCVSYEEAAELAYFGANILHPVSM
RPAMKTNLPVRIKNSYNPSHPGTVIANNRDCGEVLVTAITFKKGVELVDI
VSTRMLGQYG*
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mRNA from alignment at H-paniculata_contig8071:7076..8152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8071.16079.1 ID=mRNA_H-paniculata_contig8071.16079.1|Name=mRNA_H-paniculata_contig8071.16079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-paniculata_contig8071:7076..8152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTGCAGGTGTGGAAGGACGTGGATGGCATGATGACGGCGGATCC
GCGAGCGGTACCCGCCGCCGTGCCCGTCCCGTGCGTTTCATATGAAGAGG
CTGCCGAGCTGGCGTACTTTGGGGCAAACATCCTCCACCCGGTATGTGCA
GTGTTTCACACCTCGGATGAAAGCCGATAAAGGTCATCGAAGGTCGTTGC
GAACGGTGGAATTACGAGTTGTTGTTTTTTTCAACCCCCGGAAGGCTGAG
GCAAAAACCTTTATCCGATGCTTCCATACTTAGGTATTTCTACCAAAGTA
TGTCTACATTTCCTTTTAACAGAACAGAGTTATTTGTTCCTCTGCGGGGT
AGGTGCCACCCCGGTTCGGCCGAACCAAGTAGGCAGTGTGGGGGTTGGTT
GCACCCACTGAAAGACGTCTGACTAGACTTCCAGTCATGCTCAGTTCACA
AGCTACCCTTCCCGTTCGGGCGTAGGTCCGTGGGAATTACGAGGATGCCC
CTGCCGTTGTCTACATTGATTGATTTGTTTATCTCCATGTGCGCCTCAGC
AGGGTACGATGAACATGTCCATGTTGGCTAATCATACCGATATAACCGAG
GTGAACTCAACTTGGGGTCGTCCAGGGGGGGCATGTCGTGTCGTGTCGTG
TCGTGTCATAGGGGTTGTTTCACTGTATGTGTACCTTGTGAAGGTCTTAC
AGTAGTCCATGTAGCGTGATGAAGGCAACATGTATGTTTGACACATTTCG
GGTATCCTGTTAAGCTACTAAGCAGAATGTCGCCCCCCCCCCCCTCCCCC
TCTTTTGATGGAATTTTGCGGATGAGTGAGTGTAACAACTACGATCTGAG
GATCCCCTTATCCCCCCTGCCCCTTGGTATATTAGGTATCTATGAGACCA
GCGATGAAGACAAACCTTCCAGTGCGTATCAAGAATTCGTACAACCCTAG
CCACCCGGGAACGGTGATTGCGAACAATCGCGATTGCGGGGAGGTGCTCG
TCACAGCCATTACGTTCAAGAAGGGAGTGGAGCTCGTGGACATCGTGTCT
ACTCGAATGCTCGGGCAGTACGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8071:7076..8152+

>mRNA_H-paniculata_contig8071.16079.1 ID=mRNA_H-paniculata_contig8071.16079.1|Name=mRNA_H-paniculata_contig8071.16079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig8071:7076..8152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTGCAGGTGTGGAAGGACGTGGATGGCATGATGACGGCGGATCC
GCGAGCGGTACCCGCCGCCGTGCCCGTCCCGTGCGTTTCATATGAAGAGG
CTGCCGAGCTGGCGTACTTTGGGGCAAACATCCTCCACCCGATGAACGTG
CAGGTGTGGAAGGACGTGGATGGCATGATGACGGCGGATCCGCGAGCGGT
ACCCGCCGCCGTGCCCGTCCCGTGCGTTTCATATGAAGAGGCTGCCGAGC
TGGCGTACTTTGGGGCAAACATCCTCCACCCGGTATCTATGAGACCAGCG
ATGAAGACAAACCTTCCAGTGCGTATCAAGAATTCGTACAACCCTAGCCA
CCCGGGAACGGTGATTGCGAACAATCGCGATTGCGGGGAGGTGCTCGTCA
CAGCCATTACGTTCAAGAAGGGAGTGGAGCTCGTGGACATCGTGTCTACT
CGAATGCTCGGGCAGTACGGGTGAGTATCTATGAGACCAGCGATGAAGAC
AAACCTTCCAGTGCGTATCAAGAATTCGTACAACCCTAGCCACCCGGGAA
CGGTGATTGCGAACAATCGCGATTGCGGGGAGGTGCTCGTCACAGCCATT
ACGTTCAAGAAGGGAGTGGAGCTCGTGGACATCGTGTCTACTCGAATGCT
CGGGCAGTACGGGTGA
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