mRNA_H-paniculata_contig8060.16067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8060.16067.1
Unique NamemRNA_H-paniculata_contig8060.16067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8060.16067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8060contigH-paniculata_contig8060:3979..7058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size3080
Cds size1548
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8060.16067.1prot_H-paniculata_contig8060.16067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8060 4022..5569 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.8700461-UTR-H-paniculata_contig8060:3978..40211622931006.8700461-UTR-H-paniculata_contig8060:3978..4021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8060 3979..4021 +
1691481548.0335658-UTR-H-paniculata_contig8060:3978..40211691481548.0335658-UTR-H-paniculata_contig8060:3978..4021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8060 3979..4021 +
1622931006.9027712-UTR-H-paniculata_contig8060:5569..70581622931006.9027712-UTR-H-paniculata_contig8060:5569..7058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8060 5570..7058 +
1691481548.0573933-UTR-H-paniculata_contig8060:5569..70581691481548.0573933-UTR-H-paniculata_contig8060:5569..7058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8060 5570..7058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.8862972-CDS-H-paniculata_contig8060:4021..55691622931006.8862972-CDS-H-paniculata_contig8060:4021..5569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8060 4022..5569 +
1691481548.0445554-CDS-H-paniculata_contig8060:4021..55691691481548.0445554-CDS-H-paniculata_contig8060:4021..5569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8060 4022..5569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8060.16067.1

>prot_H-paniculata_contig8060.16067.1 ID=prot_H-paniculata_contig8060.16067.1|Name=mRNA_H-paniculata_contig8060.16067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=516bp
MVGASRPRQVPRLMVSVHMGNRRRTPSPILSAPGGMSGGGGGGGRPGSVT
GSPSGRSPSARSSNSGGSPRQLGGAGASASDSMGPVSHQQQQQRSAAVLP
HPGSVSAHAPTHSPLMFSLTGPEIANMERRRAEAGISGSSGSGGGGGFDG
SAAVLQRFAERARDSGYAGSGEGRGGGGGLDSRGSERAGGGPGGYGYHQP
PPGAGREGAGVEMASSVAAAPWGRGGIRPALFSSSADSYRGHPHNVREES
EGGGSEQARRLPFEASGAAARISTARSEERVDDHVRGRGGGVDNEMSAVV
AQARRGGSMPSSMLLSDYQERRGGSGGGGSRGSGNQHRDDSSAPRRPVDR
SFGGRSRQAAGGEEGADGGDSGGVSPEGTQRVVKRPRVWQDPAYSSSAAE
TEVGGGGLGGPRSSRAASPRTVSDLFDDTAVGTSARDSVSARIESAAAAS
DRRSGSSHVGRPDADRGSGGGATVDRIGVGGRGDGGQRGGEEGGSHGLPP
PSRVSSLMGEARRHG*
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mRNA from alignment at H-paniculata_contig8060:3979..7058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8060.16067.1 ID=mRNA_H-paniculata_contig8060.16067.1|Name=mRNA_H-paniculata_contig8060.16067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3080bp|location=Sequence derived from alignment at H-paniculata_contig8060:3979..7058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGGCTTACTGGCGCTTCGCTGGGGGGGCTTGGGAGCGACATGGTGG
GAGCTAGCCGTCCCCGCCAGGTGCCACGCTTGATGGTGAGCGTGCACATG
GGTAACCGGAGGAGAACACCGTCGCCGATTTTAAGTGCGCCTGGTGGTAT
GAGCGGCGGCGGCGGCGGCGGCGGCCGCCCGGGAAGCGTGACCGGGTCGC
CCAGTGGTCGATCTCCCAGCGCCCGATCCAGCAACTCCGGTGGTTCTCCG
CGACAGCTGGGCGGCGCCGGCGCCTCTGCTTCTGATTCGATGGGTCCTGT
AAGCCACCAGCAACAACAACAGCGATCCGCAGCGGTCTTGCCGCACCCTG
GGTCCGTCTCGGCGCATGCGCCCACGCACTCTCCCCTGATGTTCTCGCTG
ACAGGCCCTGAAATAGCCAATATGGAGAGACGTCGAGCAGAAGCAGGTAT
CAGCGGTAGCAGCGGTAGCGGTGGCGGTGGCGGCTTCGATGGATCTGCGG
CTGTGCTACAACGTTTCGCGGAAAGAGCAAGGGACAGCGGTTACGCGGGT
AGTGGAGAAGGTCGCGGTGGCGGCGGCGGTTTGGATTCGAGGGGCTCGGA
GAGGGCGGGAGGAGGTCCTGGTGGGTATGGTTACCACCAACCTCCTCCGG
GGGCGGGTCGTGAGGGCGCTGGTGTCGAGATGGCGTCGTCGGTTGCTGCT
GCCCCATGGGGCAGGGGTGGCATCCGTCCTGCCCTCTTTTCCAGTAGCGC
TGATAGTTATCGCGGTCATCCTCATAACGTTCGAGAGGAAAGTGAAGGTG
GTGGTTCCGAGCAAGCGCGAAGGCTTCCGTTTGAGGCGTCAGGGGCGGCA
GCCCGTATTTCGACGGCGCGTTCGGAGGAGAGGGTCGATGATCATGTCCG
CGGCAGGGGTGGTGGTGTTGACAATGAGATGTCTGCTGTGGTGGCTCAAG
CGCGTCGAGGAGGATCCATGCCGTCTTCGATGCTCCTTTCGGACTACCAA
GAACGCCGAGGCGGCAGCGGCGGGGGGGGTAGTCGTGGGTCAGGCAACCA
ACATCGCGACGATAGCTCCGCGCCGCGAAGACCTGTTGACCGCAGTTTTG
GTGGCCGTTCTCGCCAGGCAGCAGGGGGAGAAGAAGGCGCTGACGGCGGC
GACAGCGGCGGAGTATCGCCGGAAGGAACCCAAAGGGTTGTGAAGCGCCC
CCGTGTCTGGCAAGATCCCGCGTACTCTAGCTCGGCCGCCGAGACGGAGG
TCGGCGGTGGTGGTTTGGGAGGCCCACGCTCCTCTCGGGCCGCGTCTCCA
CGCACAGTAAGTGATTTGTTCGATGATACTGCAGTGGGCACAAGCGCTCG
AGACTCCGTGTCTGCGAGGATAGAGTCCGCGGCTGCGGCGAGTGATCGCC
GTTCTGGTTCGAGCCATGTTGGTAGGCCTGATGCTGACCGCGGCAGTGGT
GGTGGGGCTACGGTGGATAGGATTGGTGTGGGTGGGAGAGGTGATGGTGG
GCAACGTGGCGGAGAGGAGGGAGGGTCGCATGGGCTACCGCCTCCCTCCC
GTGTTTCCTCGCTTATGGGTGAAGCCCGACGTCATGGTTGAATAGATGGG
AGGAGTGCTGGGTGCTTGTTGGCGTTGCGTGCAGAGCGCAGTGGATGGAA
TATTTTCCAATGTGTTGAGAGAAGAAGGGGAGCTGTTACTGCTACTGTAG
TGTGATTGATTCGTTTGTTGTGTTCATTGTGTTGCATCGGAAGGTTTTTT
GTTCATTTTTTGTTTTTGTTTTTTCTCCTTTTTTCTCTTTTTTTTTTTTC
ATGCTCAAGCATGCGATGTCTCTGGTAAATTCCAGGATGTGATTAGTAAA
TGATTGCGAACGGGTGAGGCAAAAAGAATAGATGATAAGCTTTTGAGGAC
AGGTACTGGCATTCGTGCTTAGGCAAGGGGAGGGACAGGAAGGTAAGCAA
AATTAAGCTGAGACTGCAAGTACGGGTCAAGACTACACACTCTTTTTGTT
TTGTTTCGTTTTTTTGTTGTTCAACAAAACCGAATTTTTAGCTCGTGCTA
TTATTCGCTACCTGGTATCGTGTAAATGTTGACTTGGTCTACTAGCTTAC
GGGTATTTGCTACTTTATCGGTATTCTCTAACTTGAAAACTATTTTACAG
GTGTGAGAAAATGTGCTGATTATTACTGTTCTTCTCTTTTTGGTGTCGTT
ATTAGCCTGGCTCGGGCTTCGTGGTGTAAGGGGAGAGGAGGGAGAGTGGT
CGGATATACGCGTGGAGGTTATTCACGCCCAAAGCGGCCCGGCGAGAGAA
AAGAGTGAGATCGGATGGTCGAGTCAGCGGGCAATGGTGATTTGGGTGAA
CACACGGGACCACGGTGCAATGTTGCACAGTACTGATTATCGAGTCTTTT
TACCCCATGAATGCAGATAGTACACTGCACGCGTACTCTACGATGTGAGA
CGTTGGTGAACAACCGAAGAGGTGGTGGAGGGGTGGTGGGTGATGGAATA
CAGAAGAGATGATGACGTGGGGGGGGTTATTTTGGTTGCCTCAATAAATC
GAAAGTCAGTGTAATAGTTGATTGAAATATTTTGATATGAATAATGCGGT
CACTTTTTGCTGAGTGCCAGAGAGAGCGGTGTAAATGCCTCGGGGACATG
ATTTTTACAGACCCGTTTTTCTCGAGAACAAAATCTATGTGCGTTGGAAA
GAGATCAACGAGATTGGTCAGACGACCATCGAGATCGTTCCAACAACACA
ACTTTCGGTATCACTAGAACCGTTGTTTTTGGGAAAATTATGCACGGAAG
GAAATAGCTCCCCCTGGGCGTTTACACCGCGCTGCCTATCCGTATGTGTG
CAACCAACTGCCGTGTAAAGAGACAAGGAAGAGAAGGACGATGGGCGTGG
TGGGGTTGAGTTGTGCGTGTTGTACTGTATCTGTCTGTCCATGGTTCGCA
GTCGAGAGGATCCCTGTACCCGAATCTTTCTTGTATTCAATACACACCAT
GAAGTACAGGCGGCTGGTTCGGGCGAGATGACGAGGCAAAGTGTCTGCAT
CACTTTCTCACTGCAGTCTTCCCAGTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig8060:3979..7058+

>mRNA_H-paniculata_contig8060.16067.1 ID=mRNA_H-paniculata_contig8060.16067.1|Name=mRNA_H-paniculata_contig8060.16067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3096bp|location=Sequence derived from alignment at H-paniculata_contig8060:3979..7058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGAGCTAGCCGTCCCCGCCAGGTGCCACGCTTGATGGTGAGCGT
GCACATGGGTAACCGGAGGAGAACACCGTCGCCGATTTTAAGTGCGCCTG
GTGGTATGAGCGGCGGCGGCGGCGGCGGCGGCCGCCCGGGAAGCGTGACC
GGGTCGCCCAGTGGTCGATCTCCCAGCGCCCGATCCAGCAACTCCGGTGG
TTCTCCGCGACAGCTGGGCGGCGCCGGCGCCTCTGCTTCTGATTCGATGG
GTCCTGTAAGCCACCAGCAACAACAACAGCGATCCGCAGCGGTCTTGCCG
CACCCTGGGTCCGTCTCGGCGCATGCGCCCACGCACTCTCCCCTGATGTT
CTCGCTGACAGGCCCTGAAATAGCCAATATGGAGAGACGTCGAGCAGAAG
CAGGTATCAGCGGTAGCAGCGGTAGCGGTGGCGGTGGCGGCTTCGATGGA
TCTGCGGCTGTGCTACAACGTTTCGCGGAAAGAGCAAGGGACAGCGGTTA
CGCGGGTAGTGGAGAAGGTCGCGGTGGCGGCGGCGGTTTGGATTCGAGGG
GCTCGGAGAGGGCGGGAGGAGGTCCTGGTGGGTATGGTTACCACCAACCT
CCTCCGGGGGCGGGTCGTGAGGGCGCTGGTGTCGAGATGGCGTCGTCGGT
TGCTGCTGCCCCATGGGGCAGGGGTGGCATCCGTCCTGCCCTCTTTTCCA
GTAGCGCTGATAGTTATCGCGGTCATCCTCATAACGTTCGAGAGGAAAGT
GAAGGTGGTGGTTCCGAGCAAGCGCGAAGGCTTCCGTTTGAGGCGTCAGG
GGCGGCAGCCCGTATTTCGACGGCGCGTTCGGAGGAGAGGGTCGATGATC
ATGTCCGCGGCAGGGGTGGTGGTGTTGACAATGAGATGTCTGCTGTGGTG
GCTCAAGCGCGTCGAGGAGGATCCATGCCGTCTTCGATGCTCCTTTCGGA
CTACCAAGAACGCCGAGGCGGCAGCGGCGGGGGGGGTAGTCGTGGGTCAG
GCAACCAACATCGCGACGATAGCTCCGCGCCGCGAAGACCTGTTGACCGC
AGTTTTGGTGGCCGTTCTCGCCAGGCAGCAGGGGGAGAAGAAGGCGCTGA
CGGCGGCGACAGCGGCGGAGTATCGCCGGAAGGAACCCAAAGGGTTGTGA
AGCGCCCCCGTGTCTGGCAAGATCCCGCGTACTCTAGCTCGGCCGCCGAG
ACGGAGGTCGGCGGTGGTGGTTTGGGAGGCCCACGCTCCTCTCGGGCCGC
GTCTCCACGCACAGTAAGTGATTTGTTCGATGATACTGCAGTGGGCACAA
GCGCTCGAGACTCCGTGTCTGCGAGGATAGAGTCCGCGGCTGCGGCGAGT
GATCGCCGTTCTGGTTCGAGCCATGTTGGTAGGCCTGATGCTGACCGCGG
CAGTGGTGGTGGGGCTACGGTGGATAGGATTGGTGTGGGTGGGAGAGGTG
ATGGTGGGCAACGTGGCGGAGAGGAGGGAGGGTCGCATGGGCTACCGCCT
CCCTCCCGTGTTTCCTCGCTTATGGGTGAAGCCCGACGTCATGGTTGAAT
GGTGGGAGCTAGCCGTCCCCGCCAGGTGCCACGCTTGATGGTGAGCGTGC
ACATGGGTAACCGGAGGAGAACACCGTCGCCGATTTTAAGTGCGCCTGGT
GGTATGAGCGGCGGCGGCGGCGGCGGCGGCCGCCCGGGAAGCGTGACCGG
GTCGCCCAGTGGTCGATCTCCCAGCGCCCGATCCAGCAACTCCGGTGGTT
CTCCGCGACAGCTGGGCGGCGCCGGCGCCTCTGCTTCTGATTCGATGGGT
CCTGTAAGCCACCAGCAACAACAACAGCGATCCGCAGCGGTCTTGCCGCA
CCCTGGGTCCGTCTCGGCGCATGCGCCCACGCACTCTCCCCTGATGTTCT
CGCTGACAGGCCCTGAAATAGCCAATATGGAGAGACGTCGAGCAGAAGCA
GGTATCAGCGGTAGCAGCGGTAGCGGTGGCGGTGGCGGCTTCGATGGATC
TGCGGCTGTGCTACAACGTTTCGCGGAAAGAGCAAGGGACAGCGGTTACG
CGGGTAGTGGAGAAGGTCGCGGTGGCGGCGGCGGTTTGGATTCGAGGGGC
TCGGAGAGGGCGGGAGGAGGTCCTGGTGGGTATGGTTACCACCAACCTCC
TCCGGGGGCGGGTCGTGAGGGCGCTGGTGTCGAGATGGCGTCGTCGGTTG
CTGCTGCCCCATGGGGCAGGGGTGGCATCCGTCCTGCCCTCTTTTCCAGT
AGCGCTGATAGTTATCGCGGTCATCCTCATAACGTTCGAGAGGAAAGTGA
AGGTGGTGGTTCCGAGCAAGCGCGAAGGCTTCCGTTTGAGGCGTCAGGGG
CGGCAGCCCGTATTTCGACGGCGCGTTCGGAGGAGAGGGTCGATGATCAT
GTCCGCGGCAGGGGTGGTGGTGTTGACAATGAGATGTCTGCTGTGGTGGC
TCAAGCGCGTCGAGGAGGATCCATGCCGTCTTCGATGCTCCTTTCGGACT
ACCAAGAACGCCGAGGCGGCAGCGGCGGGGGGGGTAGTCGTGGGTCAGGC
AACCAACATCGCGACGATAGCTCCGCGCCGCGAAGACCTGTTGACCGCAG
TTTTGGTGGCCGTTCTCGCCAGGCAGCAGGGGGAGAAGAAGGCGCTGACG
GCGGCGACAGCGGCGGAGTATCGCCGGAAGGAACCCAAAGGGTTGTGAAG
CGCCCCCGTGTCTGGCAAGATCCCGCGTACTCTAGCTCGGCCGCCGAGAC
GGAGGTCGGCGGTGGTGGTTTGGGAGGCCCACGCTCCTCTCGGGCCGCGT
CTCCACGCACAGTAAGTGATTTGTTCGATGATACTGCAGTGGGCACAAGC
GCTCGAGACTCCGTGTCTGCGAGGATAGAGTCCGCGGCTGCGGCGAGTGA
TCGCCGTTCTGGTTCGAGCCATGTTGGTAGGCCTGATGCTGACCGCGGCA
GTGGTGGTGGGGCTACGGTGGATAGGATTGGTGTGGGTGGGAGAGGTGAT
GGTGGGCAACGTGGCGGAGAGGAGGGAGGGTCGCATGGGCTACCGCCTCC
CTCCCGTGTTTCCTCGCTTATGGGTGAAGCCCGACGTCATGGTTGA
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