mRNA_H-paniculata_contig8051.16062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8051.16062.1
Unique NamemRNA_H-paniculata_contig8051.16062.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8051.16062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8051contigH-paniculata_contig8051:3562..4270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size709
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8051.16062.1prot_H-paniculata_contig8051.16062.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8051 3682..4089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.9784324-UTR-H-paniculata_contig8051:3561..36811622931005.9784324-UTR-H-paniculata_contig8051:3561..3681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8051 3562..3681 +
1691481547.6577451-UTR-H-paniculata_contig8051:3561..36811691481547.6577451-UTR-H-paniculata_contig8051:3561..3681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8051 3562..3681 +
1622931006.0114732-UTR-H-paniculata_contig8051:4089..42701622931006.0114732-UTR-H-paniculata_contig8051:4089..4270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8051 4090..4270 +
1691481547.6745915-UTR-H-paniculata_contig8051:4089..42701691481547.6745915-UTR-H-paniculata_contig8051:4089..4270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8051 4090..4270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.997106-CDS-H-paniculata_contig8051:3681..40891622931005.997106-CDS-H-paniculata_contig8051:3681..4089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 3682..4089 +
1691481547.6664855-CDS-H-paniculata_contig8051:3681..40891691481547.6664855-CDS-H-paniculata_contig8051:3681..4089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 3682..4089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8051.16062.1

>prot_H-paniculata_contig8051.16062.1 ID=prot_H-paniculata_contig8051.16062.1|Name=mRNA_H-paniculata_contig8051.16062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MVTLQMVTRWSYTRRTVTHACSVCFSDGTVQVTYSFIFRSFSILHGISSR
LHIIPSHGHLPQLKQTQYSFQFFSYLFVSCVRICLGGWNVSPLVLYSTLA
RSAQFLSPRIPTGTPFLFIAIQESKCLSIALIDFH*
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mRNA from alignment at H-paniculata_contig8051:3562..4270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8051.16062.1 ID=mRNA_H-paniculata_contig8051.16062.1|Name=mRNA_H-paniculata_contig8051.16062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=709bp|location=Sequence derived from alignment at H-paniculata_contig8051:3562..4270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATGGCTTCAAATTGTGTCACCCCTCGGACAAATACAAACGGAGCATTC
GTAACTATCTCTAACTGTCATTATTTGTCGTGGGTTAAAGACGTATTTAC
TCCTAACCCTAAGTCTACGAATGGTCACTCTACAGATGGTCACCAGGTGG
TCGTATACCCGGCGAACAGTCACACATGCTTGTTCTGTTTGTTTTTCGGA
TGGTACTGTACAGGTTACATACTCTTTTATCTTCCGGAGCTTTTCGATAC
TCCATGGTATATCGAGTAGATTGCACATTATCCCGTCGCATGGACACCTT
CCCCAACTCAAACAGACACAGTATTCATTCCAATTTTTCTCGTATTTATT
CGTGTCTTGTGTTCGTATTTGTCTGGGGGGATGGAATGTTTCACCTCTTG
TACTTTACTCAACCCTTGCGCGTTCAGCCCAATTTCTATCTCCTAGAATC
CCTACAGGTACACCTTTTTTGTTTATCGCAATCCAAGAATCTAAATGCCT
CTCTATCGCCTTGATCGATTTTCACTAACTCACTTATATAGATGTAAGGG
TGTACTTGCCATTTTTCAGGTGTTCAAATTGAAAAGGCTAAGTACCTACT
ATATATATTGTACCATACTCCACTCGGAACAAAATAACCGTTCACCAGAA
TGTGAAAATGATTTGACAACCTTGAAGCAGAAGGTGGAATCGTGCCGCCT
TTTGTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig8051:3562..4270+

>mRNA_H-paniculata_contig8051.16062.1 ID=mRNA_H-paniculata_contig8051.16062.1|Name=mRNA_H-paniculata_contig8051.16062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig8051:3562..4270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCACTCTACAGATGGTCACCAGGTGGTCGTATACCCGGCGAACAGT
CACACATGCTTGTTCTGTTTGTTTTTCGGATGGTACTGTACAGGTTACAT
ACTCTTTTATCTTCCGGAGCTTTTCGATACTCCATGGTATATCGAGTAGA
TTGCACATTATCCCGTCGCATGGACACCTTCCCCAACTCAAACAGACACA
GTATTCATTCCAATTTTTCTCGTATTTATTCGTGTCTTGTGTTCGTATTT
GTCTGGGGGGATGGAATGTTTCACCTCTTGTACTTTACTCAACCCTTGCG
CGTTCAGCCCAATTTCTATCTCCTAGAATCCCTACAGGTACACCTTTTTT
GTTTATCGCAATCCAAGAATCTAAATGCCTCTCTATCGCCTTGATCGATT
TTCACTAAATGGTCACTCTACAGATGGTCACCAGGTGGTCGTATACCCGG
CGAACAGTCACACATGCTTGTTCTGTTTGTTTTTCGGATGGTACTGTACA
GGTTACATACTCTTTTATCTTCCGGAGCTTTTCGATACTCCATGGTATAT
CGAGTAGATTGCACATTATCCCGTCGCATGGACACCTTCCCCAACTCAAA
CAGACACAGTATTCATTCCAATTTTTCTCGTATTTATTCGTGTCTTGTGT
TCGTATTTGTCTGGGGGGATGGAATGTTTCACCTCTTGTACTTTACTCAA
CCCTTGCGCGTTCAGCCCAATTTCTATCTCCTAGAATCCCTACAGGTACA
CCTTTTTTGTTTATCGCAATCCAAGAATCTAAATGCCTCTCTATCGCCTT
GATCGATTTTCACTAA
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