mRNA_H-paniculata_contig80301.16052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig80301.16052.1
Unique NamemRNA_H-paniculata_contig80301.16052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A6B7EVD7_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVD7_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 9.760e-39
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 MKEAIGIVLGLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            MKEAIGI LGLYWAEIT+L LFLVIAF+LEQKFNFKKPRQWFL+FNNLIF+RG SALAYAVPYLDMINLHIPLL
Sbjct:    1 MKEAIGIALGLYWAEITILVLFLVIAFILEQKFNFKKPRQWFLSFNNLIFRRGLSALAYAVPYLDMINLHIPLL 74          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A5A4MJ83_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ83_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.570e-34
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 MKEAIGIVLGLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            MKEAI ++LGLYW EI +L LFLVIAF+LEQKFNFKKPRQWF AFN LIF R FSA+AYAVPYLDMINLHIPLL
Sbjct:    1 MKEAIRVLLGLYWLEIVILVLFLVIAFILEQKFNFKKPRQWFFAFNALIFTRSFSAIAYAVPYLDMINLHIPLL 74          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A1I9LVT6_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.710e-27
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 MKEAIGIVLGLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            M+EAI I+  LYW EI +L LF+++AFVLEQK+NF KPR+WFL+FN L+F+R FSA AY +PYLDMINLHIPLL
Sbjct:    1 MQEAIKIMFNLYWLEIVILILFVLLAFVLEQKWNFNKPRKWFLSFNALLFQRSFSAAAYFIPYLDMINLHIPLL 74          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: D1J783_ECTSI (Uncharacterized protein Escp124 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J783_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.670e-23
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 MKEAIGIVLGLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            M E + I+  +Y  EI++L  F+ IAF+LEQKF F KP++WF+AFN L+F+RGFSALAY VPYLDMINLHIPLL
Sbjct:    1 MIETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLL 74          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A0S0G9V7_COSCS (Uncharacterized protein n=24 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9V7_COSCS)

HSP 1 Score: 91.3 bits (225), Expect = 5.550e-21
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   28 GLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            G+YW EI +  LFLV+ FVLEQKFNF KPR+WFLAFN L+ +R  S LAY +PYLD++N H+PL+
Sbjct:   15 GVYWIEIFIFILFLVLGFVLEQKFNFNKPRKWFLAFNGLVCQRVLSVLAYYIPYLDVVNTHMPLI 79          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A8F0F7K9_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7K9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.390e-19
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    4 KEAIGIVLGLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            +  + +  G+YW E+ +  LFL I F+LEQ+FNF KPR+WF AFN LI +R  S +AY VPYLD++N H+PL+
Sbjct:    7 ENLVELFFGVYWLELLIFILFLFIGFILEQRFNFNKPRKWFFAFNGLICQRVLSVMAYYVPYLDVVNTHMPLI 79          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A8F0JYW7_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYW7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.620e-17
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   34 YWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            YW E+++   F+V+ FV+E+ FNF KPR+WF+AFN LI +R  S LA+ VPYLD++N HIPL+
Sbjct:   12 YWLELSIFLFFIVLGFVMEKAFNFTKPRKWFMAFNGLICQRVLSVLAFYVPYLDVVNTHIPLI 74          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A2R4QPT5_9PHAE (Hypothetical chloroplast protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.650e-16
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   34 YWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            YW EI +   FL + F+LEQKFN KKPR+WF  FN +I +R  S  AY +PYLD+IN H+PL+
Sbjct:   13 YWIEIIIFFSFLTLGFILEQKFNIKKPRKWFFEFNTVILQRLLSIFAYYIPYLDVINTHLPLI 75          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A8F0F712_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F712_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.270e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   34 YWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIP 216
            YW EI ++ LFL+I F+L+QKFN KKPR+WFLA N LIF+R  S LA+ +PY+D++N  IP
Sbjct:   59 YWGEIFLIILFLLIGFILDQKFNIKKPREWFLACNFLIFQRSCSVLAFYIPYIDLLNTLIP 119          
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Match: A0A8E5XRK1_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRK1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.900e-15
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   37 WAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIFKRGFSALAYAVPYLDMINLHIPLL 222
            W EI    LF+++  +L+QKFN KKPR+WFLAFN ++ +R F+ LAY +PYL+++N HIP++
Sbjct:   25 WLEIFCFFLFILLGIILDQKFNIKKPRKWFLAFNGVVIQRFFAVLAYYIPYLEVLNTHIPII 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80301.16052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6B7EVD7_9PHAE9.760e-3990.54Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A5A4MJ83_9PHAE6.570e-3482.43Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A1I9LVT6_9PHAE2.710e-2768.92Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
D1J783_ECTSI2.670e-2364.86Uncharacterized protein Escp124 n=1 Tax=Ectocarpus... [more]
A0A0S0G9V7_COSCS5.550e-2163.08Uncharacterized protein n=24 Tax=Laminariales TaxI... [more]
A0A8F0F7K9_9PHAE2.390e-1952.05Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A8F0JYW7_9PHAE3.620e-1755.56Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A2R4QPT5_9PHAE2.650e-1655.56Hypothetical chloroplast protein n=3 Tax=Fucaceae ... [more]
A0A8F0F712_9PHAE3.270e-1659.02Uncharacterized protein n=1 Tax=Protohalopteris sp... [more]
A0A8E5XRK1_9PHAE1.900e-1551.61Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig80301contigH-paniculata_contig80301:313..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931004.149201-CDS-H-paniculata_contig80301:312..5341622931004.149201-CDS-H-paniculata_contig80301:312..534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80301 313..534 +
1691481546.8900666-CDS-H-paniculata_contig80301:312..5341691481546.8900666-CDS-H-paniculata_contig80301:312..534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80301 313..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig80301.16052.1prot_H-paniculata_contig80301.16052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig80301 313..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig80301.16052.1

>prot_H-paniculata_contig80301.16052.1 ID=prot_H-paniculata_contig80301.16052.1|Name=mRNA_H-paniculata_contig80301.16052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MKEAIGIVLGLYWAEITVLALFLVIAFVLEQKFNFKKPRQWFLAFNNLIF
KRGFSALAYAVPYLDMINLHIPLL
back to top

mRNA from alignment at H-paniculata_contig80301:313..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig80301.16052.1 ID=mRNA_H-paniculata_contig80301.16052.1|Name=mRNA_H-paniculata_contig80301.16052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig80301:313..534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGAAGCTATTGGGATCGTATTAGGTTTGTATTGGGCCGAAATTAC TGTTTTGGCTTTATTTTTAGTTATTGCATTTGTATTAGAACAAAAATTTA ATTTTAAAAAACCTAGACAATGGTTTTTAGCTTTTAATAATTTAATTTTT AAACGAGGTTTCTCAGCGCTTGCGTATGCTGTACCATATTTAGATATGAT TAATTTACATATACCATTATTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig80301:313..534+

>mRNA_H-paniculata_contig80301.16052.1 ID=mRNA_H-paniculata_contig80301.16052.1|Name=mRNA_H-paniculata_contig80301.16052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig80301:313..534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGAAGCTATTGGGATCGTATTAGGTTTGTATTGGGCCGAAATTAC
TGTTTTGGCTTTATTTTTAGTTATTGCATTTGTATTAGAACAAAAATTTA
ATTTTAAAAAACCTAGACAATGGTTTTTAGCTTTTAATAATTTAATTTTT
AAACGAGGTTTCTCAGCGCTTGCGTATGCTGTACCATATTTAGATATGAT
TAATTTACATATACCATTATTGATGAAAGAAGCTATTGGGATCGTATTAG
GTTTGTATTGGGCCGAAATTACTGTTTTGGCTTTATTTTTAGTTATTGCA
TTTGTATTAGAACAAAAATTTAATTTTAAAAAACCTAGACAATGGTTTTT
AGCTTTTAATAATTTAATTTTTAAACGAGGTTTCTCAGCGCTTGCGTATG
CTGTACCATATTTAGATATGATTAATTTACATATACCATTATTG
back to top