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Homology
BLAST of mRNA_H-paniculata_contig8012.16039.1 vs. uniprot
Match: A0A6H5JGF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF5_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.990e-13 Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 2
Query: 176 GIGALMIFAPGESRMCSLDPMLPVVLGSFAGVLLAAQALVEGWAVG-----------STEDMEQLDS------------------LARSLETVLSDVATKYRSCLSSFKFPLAYAETINRLC 454
G+ AL++ APGESRM SLD MLPVVLGS +G+LLA Q G STE ++ L +LE L+ V++KYRSCL +FP YAETINR C
Sbjct: 677 GMSALVVNAPGESRMWSLDTMLPVVLGSLSGLLLAVQDRSRGQGXXXXXXXXXREAVSTEGVQXXXXXXXXXXXXXXXXXXXXXLLVAALEEALARVSSKYRSCLPDLRFPPVYAETINRFC 798
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Model size | 873 |
| Cds size | 273 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8012.16039.1 >prot_H-paniculata_contig8012.16039.1 ID=prot_H-paniculata_contig8012.16039.1|Name=mRNA_H-paniculata_contig8012.16039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MIFAPGESRMCSLDPMLPVVLGSFAGVLLAAQALVEGWAVGSTEDMEQLD
SLARSLETVLSDVATKYRSCLSSFKFPLAYAETINRLCPP* back to topmRNA from alignment at H-paniculata_contig8012:956..3726- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8012.16039.1 ID=mRNA_H-paniculata_contig8012.16039.1|Name=mRNA_H-paniculata_contig8012.16039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2771bp|location=Sequence derived from alignment at H-paniculata_contig8012:956..3726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATAATTGTGTACTCCCAAGTTGAACCTCGGTTAACAATATTTGTTGTT
TTTCATTCACGCTGAATAGTTTGTGCTAATATTGACAGTATTCATTGTCT
TGACGAGTAGCCACTGCCCTTCCGCGCCCGCCCCCGCCGTCCCCTCCGGT
GCCTTGTGCTTGTGTCTTGAGAGCAGGTATCGGCGCACTGATGATATTCG
CTCCTGGGGAATCTCGGATGTGTTCGCTTGACCCAATGCTGCCTGTGGTC
CTGGGCAGCTTCGCGGGTGTTCTTTTGGCGGCACAAGCTCTCGTCGAGGT
AGAGCATTACATAAAACATATATGGGGGAAATATTGACAATATGAAACTT
ACCTAGGAGTGCCGCCGTTCCCCGTGGTCATGTGCCTCAGCGTGCACTAT
TACGGAGGATCATAATAATCAGGAGCATTTTTTTTGGTTTTTCGGAAATT
GAATTTTGTTTTTTCCCGTTGGTCTAGAGATTTTCGCTTCTAACTGAAAA
CAAAAACACACTCTAAAAACACTTGCACAGGCATGCAGCAACCGATTGGT
ACATATCGTATTGCATGAGTTACACCTCAAAATGTCAATTTTCTAATTTG
CTCCTGATTATTATGTTCCTCCGGAATGTGACAAGTGTTGTTCGTGCTGG
ATAGATATCGACCGTACTCGACTTTGAAAAGTAGGGTTGAGTGAGTACTA
TTAATACTTTGTAAAGAAAATGTTTCTTGTGTTGGTGCACGTGAACACAA
TCGACACAAATTAATGGTCGCTCTATTACTGGAGTAAATTCGCATGGTAA
AAATAGAGAGGGTTGTGTTTTCTCTGTCAAGTGGCGGAAATACGTGCACT
GCGCCTGGCTGGACACTCGGCTGTTCATGTCACCGTGCGAGAGCATGCTG
CTGGGCGAGAGAGCGGTGTCGTCCCTACGAGCACGAGCGGGAGTCCTAAT
CAAGGTCACTTGTTCAACACTGATTCTCTGCCAAAACAAGATGTGCATCC
TTGCGTCTTGGCAGCAGCGAAAAATTAGCGTCATTGCTATGATTAACGTG
GGTATATACACACACGTCGCAAAGGTGCGTCTATCAAGCGGAGACGATCG
GCGTGGACAGAATTTGGGAACTGTCCCTTGTTTTTCTGAAATTCGGAATC
GTAATTTGGAAGGAAAGTGTTTGCTGATATTATGACGCGCAATTCTGTTT
CGCAGCGCGCGCGTAAGGCTCGCCCGATGGTCGAAGCCTTGTGTGTTGTG
TGCTTTGTTGCGAAGGATGCGTGCTTGCTGCTGAGGGGGGCAACGCAAGT
CGCAAATCGCTACTGAGCCCCGAGGAGCACAAAGTCATCACCTGGCACGA
GTAACCAGTTCCTAGTCGCATGTGGCTCATCCAGTCATTCTACTGAGCGG
ATAATGACCTAGTATCAAACGAAAGGAGGTTGAATACGGCTGGATACAGC
GGATACACATATTCTGACACCAGTTTGTTGCGGTACAGGAGAGAGCTCTG
CACGATTCATTGATTGTAGACTAAAAAAACACGGAAGATCACTCGACCAC
GTCGCGTGGGCGTTTCCTGACGAGCTAAGTCGAATCGCCTGCAAAAAAAT
AATCTTCCAGTTGTTGAAGTTCCCCATGTCCCCCTGCTCCCATCAACTTG
TTGCTTTGTTTCTGGGATCAGTCTTTCACTCAGCAGTATAAACTATACCT
GATAAGCACTCCAGTTTTGATGGATTGCTACACGAGCCGTATTAATAACC
AGTGATGGCGATACTGTCTGTCTCTCTGTCCTGTTTTTCGAGTTTTGCCT
GTGTCGATCGTCGTACTAGTTAGTTAGTACATGCTGTTGCGCGCCCCCTT
CTCCTCGCCTCGCCGTTCTTGTTGAGGCTGCAAAGGGCAGTTACACGCTT
TTGTCCCCGAAAGGTGCAGGAATATGTGAATGCAGGCAACTACGGTACCT
CGTCTGTTGTATCCTTTTTCAAGAACCGGATTTCCGAACGATGTGTATTT
TTACAATAACGGGTACATCTTTACAAAAGAGAGAGAGAGAGAGAGAGCTA
CTTGACATAACTCCCGTTTCTCAGTGGCGTTAGGGATGCTTGCCCCCATT
TAAAAAAAATGAATTATGATATTGACTGCTGAAATTGATTTAATGGTCTC
TTTTTTTCGCGTTGATTGCGTGTGTATTTTTTTGCTGGTCACCTAGGGGT
GGGCAGTCGGTTCGACGGAGGACATGGAGCAACTGGATAGCCTGGCTCGG
TCTTTGGAGACGGTCCTGTCGGATGTGGCGACGAAATACCGATCCTGTCT
TTCGTCATTCAAATTTCCGCTGGCGTATGCGGAAACAATAAACCGCCTCT
GCCCCCCTTGACCGATTGATTCATGTCTTTCCTTGTGGTGTGGTTTCTTT
TGGCGAAGAAGAGTATGGGAGAAGAGGGCCTTTTGTTGTATTTTCTTTCC
TTTCCAATTTCATATTTTTTTGTAATAGATATTTCCTTGGTGTCTTGAGC
TTCGTGTTTTTTTTTTGTTTTTTTTCTGTGGGCTAGTTCGGAGTGCTTTG
TCTCTCCTGTGTTTTACGTGTAGGGAAGATGAGCTCTGTTTAGGCAGTAG
ACACGCCAGAGTCGATCTGAAATTAGTTGATACTGTACCGTGTGTGCGTC
GCTCATGTGCACAGGCAAGGCAATGCTCCCATATTCAACAGTATATTGGT
GAGATTGAGATCCAAATTTGAGATGGAGATTCTGGGTTATGTTGGAAATA
GGCTGTATCCTGAAGATTCGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig8012:956..3726- >mRNA_H-paniculata_contig8012.16039.1 ID=mRNA_H-paniculata_contig8012.16039.1|Name=mRNA_H-paniculata_contig8012.16039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig8012:956..3726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTCGCTCCTGGGGAATCTCGGATGTGTTCGCTTGACCCAATGCT
GCCTGTGGTCCTGGGCAGCTTCGCGGGTGTTCTTTTGGCGGCACAAGCTC
TCGTCGAGATGATATTCGCTCCTGGGGAATCTCGGATGTGTTCGCTTGAC
CCAATGCTGCCTGTGGTCCTGGGCAGCTTCGCGGGTGTTCTTTTGGCGGC
ACAAGCTCTCGTCGAGGGGTGGGCAGTCGGTTCGACGGAGGACATGGAGC
AACTGGATAGCCTGGCTCGGTCTTTGGAGACGGTCCTGTCGGATGTGGCG
ACGAAATACCGATCCTGTCTTTCGTCATTCAAATTTCCGCTGGCGTATGC
GGAAACAATAAACCGCCTCTGCCCCCCTTGAGGGTGGGCAGTCGGTTCGA
CGGAGGACATGGAGCAACTGGATAGCCTGGCTCGGTCTTTGGAGACGGTC
CTGTCGGATGTGGCGACGAAATACCGATCCTGTCTTTCGTCATTCAAATT
TCCGCTGGCGTATGCGGAAACAATAAACCGCCTCTGCCCCCCTTGA back to top
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