mRNA_H-paniculata_contig801.16036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig801.16036.1 vs. uniprot
Match: D8LEV6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEV6_ECTSI) HSP 1 Score: 132 bits (332), Expect = 2.920e-27 Identity = 199/503 (39.56%), Postives = 226/503 (44.93%), Query Frame = 3
Query: 2925 DRAAGGDR----RGGG--------GVPTGRGVVRERDPPDSPRDRGRYNPTPPQPPPLIGAGDQQ-GSGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------HKRPRSPEAPSMELDSESPSPPPRGIGSCSREQQDPKQPQQQSKALRGSGECNNRSPHRSTWDPQSSPSATSDQPSDPHF-----GGSDGGGRYAKLNQHPP---PLPSPPSSSARTHTPGTWAPHPLPGTSLHPTSRHXXXXXXXXXQSPGSGAAAGTAGRSGRYTPTQQHPSEHAGXXXXXTQAAAGARTSQHGASGSNASPGALAGHSRGSPLL----------------------------PRXXXXXXXXXXXXXXXXXXXXXXXXXALGPHGARSSPAGALPVPAKSGETARSGALSGWVSAAGGXXXXXXXXXXXXXXXSTNGGARRGRGPVITDRSVLLKAEFLELHDMLLESDFQWEESQRFCEVLKLRLDQLMLAP 4268
DR GGDR RG G +P GRGVVRERD PDSPRDRGRYNPTPPQPPPL+ + + GSGTLS XXXX +KRPRSPE +M+L+ +SPSPP RG G +Q RG+ ++R+ HR WD +S+P P DP GG GGG +A+ +QH PL + P XXXXXXXXX GR GR T HP H + G G P A +RGSPL+ XXXXXXXXXXXX ALGPHG+RSSP K GE R SAA G XXXXXXXXX R PVITDR + LKAEFLELHDML+ESDFQWEESQRFCEVLKL+LDQLML P
Sbjct: 787 DRGVGGDRGGPYRGNGHXXXXXXXSLPGGRGVVRERDRPDSPRDRGRYNPTPPQPPPLMSSAEHSHGSGTLSVSARRASLGYPLGGGRNGGDWQDRNAGGMPGQMGGXXXXXXXXXXYKRPRSPEPVAMDLEEDSPSPP-RGRGQEFLKQD-----------FRGNNYADSRN-HRPGWDGRSTP------PGDPSSRYAMEGGGSGGGNHAR-HQHQQGMHPLANGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXMGRLGRTT---GHPPMHP----------------ERGGVGPRLGPNAH--QNRGSPLVGGSVGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRSPLSMHSASPLALGPHGSRSSPVSGQ----KGGEEGRG-------SAAAGDGDSVAXXXXXXXXXXXXXXXXXXRPPVITDRLISLKAEFLELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVP 1235 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig801.16036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig801.16036.1 >prot_H-paniculata_contig801.16036.1 ID=prot_H-paniculata_contig801.16036.1|Name=mRNA_H-paniculata_contig801.16036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1339bp MNRRSSQGVPKGGYGSLACAPARRRSRSRSRSPPQSVSSSSGRSRSRSTRback to top mRNA from alignment at H-paniculata_contig801:3828..22404- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig801.16036.1 ID=mRNA_H-paniculata_contig801.16036.1|Name=mRNA_H-paniculata_contig801.16036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=18577bp|location=Sequence derived from alignment at H-paniculata_contig801:3828..22404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig801:3828..22404- >mRNA_H-paniculata_contig801.16036.1 ID=mRNA_H-paniculata_contig801.16036.1|Name=mRNA_H-paniculata_contig801.16036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8034bp|location=Sequence derived from alignment at H-paniculata_contig801:3828..22404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |