mRNA_H-paniculata_contig8009.16035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8009.16035.1
Unique NamemRNA_H-paniculata_contig8009.16035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: G4YEE3_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEE3_PHYSP)

HSP 1 Score: 80.5 bits (197), Expect = 7.220e-16
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    4 HPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGGYVVLMEWMGLDAAEERSWEPVSTIHEDVAAYL 357
            H  KL   W GP+RV+G+  A+ ++++ ++ GAT+  HA R+++YAD SLD+      +         F +A   +  + P     Y VL+ W GL+  E+ SWEP++T+HEDV   L
Sbjct:   44 HVNKLAVKWIGPYRVIGA-QANSFEIEHLLSGATRRVHASRLKMYADSSLDLRAFGEILEHIANQDVYFTVASFKEHRKHPAHS--YEVLVAWEGLEEIED-SWEPMTTMHEDVPVKL 157          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: A0A6G0QQ14_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ14_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-12
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 KHPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGG--YVVLMEWMGLDAAEERSWEPVSTIHEDV 345
            K   KL  TW GP+RV+G+ +A+ ++++ ++   TK  HA R+++YAD+SLD+  +         H    +I   V+      +     Y +L+ W GL+A E+ SWEPV+T+H+DV
Sbjct:  237 KQGNKLSVTWVGPYRVIGA-NANSFEIKHLITATTKFAHASRLKMYADQSLDINEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMHDDV 345          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: H3GNA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNA9_PHYRM)

HSP 1 Score: 72.8 bits (177), Expect = 2.920e-12
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 KHPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGG--YVVLMEWMGLDAAEERSWEPVSTIHEDV 345
            K   KL  TW GP+RV+G+ +A+ ++++ ++   TK  HA R+++YAD+SLDV  +         H    +I   V+      +     Y +L+ W GL+A E+ SWEPV+T++EDV
Sbjct:  916 KKGNKLSVTWVGPYRVIGA-NANSFEIEHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYEDV 1024          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: A0A6A3M013_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M013_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.800e-12
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 KHPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGG--YVVLMEWMGLDAAEERSWEPVSTIHEDV 345
            K   KL  TW GP+RV+G+ +A+ ++++ ++   TK  HA R+++YAD+SLDV  +         H    +I   V+      +     Y +L+ W GL+A E+ SWEPV+T++EDV
Sbjct:  524 KKGNKLSVTWIGPYRVIGA-NANSFEIEHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYEDV 632          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: A0A6A3MT93_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MT93_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.810e-12
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 KHPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGG--YVVLMEWMGLDAAEERSWEPVSTIHEDV 345
            K   KL  TW GP+RV+G+ +A+ ++++ ++   TK  HA R+++YAD+SLDV  +         H    +I   V+      +     Y +L+ W GL+A E+ SWEPV+T+++DV
Sbjct:  196 KQGNKLSVTWVGPYRVIGA-NANSFEIKHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYDDV 304          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-8
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   13 KLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIAD-IVDIGEDPVREGGYVVLMEWMGLDAAEERSWEPVSTIHEDV 345
            KL+  W GP++V+ + S H +K++ +V G   + H  R++ YAD +L+   +   + +    QG     D  ++   +P R G + +L+ W+GL A E+ SWEP+ST+ +DV
Sbjct:  510 KLLGQWVGPFKVIEALS-HSFKIEHLVTGRVYDVHGSRLKFYADAALNTMEE---LLELVSSQGMLLGVDKFIEHRYNPER-GRWELLVSWLGLQAIED-SWEPLSTLLQDV 615          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: W2PS36_PHYPN (Chromo domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PS36_PHYPN)

HSP 1 Score: 61.2 bits (147), Expect = 1.260e-8
Identity = 35/118 (29.66%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    4 HPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGGYVVLMEWMGLDAAEERSWEPVSTIHEDVAAYL 357
            H  KL   W GP+R+V S + + + V+ +V G++ + H  R++ Y D +LD+  +   +      QG     + +           Y V ++W+G +  E+ SWEP++TI EDV+  L
Sbjct:   85 HANKLGIMWVGPYRIVAS-TDYYFTVEHLVNGSSMDVHPSRLKFYVDDALDISEE---LLDHIASQGTLLAVEAIVEHRFNGDMDAYEVKVKWLGFEPIED-SWEPLTTISEDVSQLL 197          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: A0A225UW06_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UW06_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.310e-7
Identity = 35/112 (31.25%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   13 KLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKF-EIADIVDIGEDPVREGGYVVLMEWMGLDAAEERSWEPVSTIHEDV 345
            KL+  W GP+R+  +   H +K++ ++ G   E HA  ++ YAD  LDV   T    +   +QG    + + VD   +   +  + + + W+GL A E  SWEP++T+ +DV
Sbjct:  156 KLLGHWIGPFRITAA-CPHSFKIEHLITGRKYEVHASSLKFYADSELDV---TEEFLELVGNQGMLIGVEEFVDHRFNKTAQR-WELFVSWLGLQAIEN-SWEPLTTLLQDV 261          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: A0A225UNN6_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UNN6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-7
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 1
Query:   10 KKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGGY-------VVLMEWMGLDAAEERSWEPVSTIHEDVAAYLR 360
            +KL+  W GP++V+ +   H + ++ +V     E H  R++ YAD  LD    T  + +   +QG         +G +  R+  Y        +L+ W+GL A E+ SWEP+ST+ +DV   +R
Sbjct:   87 RKLLGHWVGPFKVIAA-LPHSFHIEHLVTARKYEVHGSRLKFYADSYLDT---TTELLELIANQGML-------LGVEEFRDHRYNQEFDRWELLVSWVGLQAIED-SWEPLSTLLQDVPVKVR 198          
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Match: F0WDV9_9STRA (AlNc14C70G4828 protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WDV9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   10 KKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKSLDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGGYVVLMEWMGLDAAEERSWEP 321
            +KL   W GP +V  + S  ++++  ++ GATKE HA R+R+YA+K L V  D   +  A   +G        +  + P     Y VL++W G+ A E  +WEP
Sbjct:   21 RKLKKQWNGPAQVENTISKWIFELCHLLAGATKEVHASRLRIYAEKELQVTGDLLDMV-ANNSEGHVAHHFASNRFDKPANR--YEVLVDWRGITAVEA-TWEP 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8009.16035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
G4YEE3_PHYSP7.220e-1635.59Chromo domain-containing protein n=1 Tax=Phytophth... [more]
A0A6G0QQ14_9STRA1.300e-1235.04Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
H3GNA9_PHYRM2.920e-1235.90Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3M013_9STRA3.800e-1235.90Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A6A3MT93_9STRA6.810e-1235.04Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A225VA87_9STRA1.170e-833.04Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W2PS36_PHYPN1.260e-829.66Chromo domain-containing protein n=7 Tax=Phytophth... [more]
A0A225UW06_9STRA1.310e-731.25Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A225UNN6_9STRA1.450e-729.84Chromo domain-containing protein (Fragment) n=1 Ta... [more]
F0WDV9_9STRA1.760e-733.65AlNc14C70G4828 protein n=1 Tax=Albugo laibachii Nc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8009contigH-paniculata_contig8009:1387..1797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog164328.Phyra78074
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QI3H@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.7554827-CDS-H-paniculata_contig8009:1386..17971622931001.7554827-CDS-H-paniculata_contig8009:1386..1797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8009 1387..1797 -
1691481545.745666-CDS-H-paniculata_contig8009:1386..17971691481545.745666-CDS-H-paniculata_contig8009:1386..1797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8009 1387..1797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8009.16035.1prot_H-paniculata_contig8009.16035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8009 1387..1797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8009.16035.1

>prot_H-paniculata_contig8009.16035.1 ID=prot_H-paniculata_contig8009.16035.1|Name=mRNA_H-paniculata_contig8009.16035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
KHPKKLVDTWTGPWRVVGSGSAHVYKVQDIVMGATKEGHAVRMRLYADKS
LDVEMDTRTVFQATKHQGKFEIADIVDIGEDPVREGGYVVLMEWMGLDAA
EERSWEPVSTIHEDVAAYLRRKLKKMRLDASIRADHE
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mRNA from alignment at H-paniculata_contig8009:1387..1797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8009.16035.1 ID=mRNA_H-paniculata_contig8009.16035.1|Name=mRNA_H-paniculata_contig8009.16035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig8009:1387..1797- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCACCCGAAAAAGCTCGTCGACACGTGGACCGGCCCTTGGCGAGTGGT TGGGAGTGGCTCCGCGCATGTTTATAAGGTCCAAGACATTGTGATGGGGG CCACCAAGGAGGGGCATGCAGTTCGAATGCGACTGTACGCGGACAAATCA TTGGATGTGGAAATGGACACTCGGACTGTGTTCCAGGCAACGAAACACCA GGGGAAATTCGAAATCGCTGATATCGTTGACATCGGCGAGGACCCTGTCC GAGAGGGGGGGTACGTGGTGCTGATGGAATGGATGGGGTTGGACGCTGCC GAGGAGCGGAGTTGGGAACCCGTGTCCACCATCCATGAGGATGTTGCGGC ATATCTCAGGCGCAAGCTGAAGAAAATGCGGCTGGATGCAAGTATAAGGG CAGATCACGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8009:1387..1797-

>mRNA_H-paniculata_contig8009.16035.1 ID=mRNA_H-paniculata_contig8009.16035.1|Name=mRNA_H-paniculata_contig8009.16035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig8009:1387..1797- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCACCCGAAAAAGCTCGTCGACACGTGGACCGGCCCTTGGCGAGTGGT
TGGGAGTGGCTCCGCGCATGTTTATAAGGTCCAAGACATTGTGATGGGGG
CCACCAAGGAGGGGCATGCAGTTCGAATGCGACTGTACGCGGACAAATCA
TTGGATGTGGAAATGGACACTCGGACTGTGTTCCAGGCAACGAAACACCA
GGGGAAATTCGAAATCGCTGATATCGTTGACATCGGCGAGGACCCTGTCC
GAGAGGGGGGGTACGTGGTGCTGATGGAATGGATGGGGTTGGACGCTGCC
GAGGAGCGGAGTTGGGAACCCGTGTCCACCATCCATGAGGATGTTGCGGC
ATATCTCAGGCGCAAGCTGAAGAAAATGCGGCTGGATGCAAGTATAAGGG
CAGATCACGAGAAGCACCCGAAAAAGCTCGTCGACACGTGGACCGGCCCT
TGGCGAGTGGTTGGGAGTGGCTCCGCGCATGTTTATAAGGTCCAAGACAT
TGTGATGGGGGCCACCAAGGAGGGGCATGCAGTTCGAATGCGACTGTACG
CGGACAAATCATTGGATGTGGAAATGGACACTCGGACTGTGTTCCAGGCA
ACGAAACACCAGGGGAAATTCGAAATCGCTGATATCGTTGACATCGGCGA
GGACCCTGTCCGAGAGGGGGGGTACGTGGTGCTGATGGAATGGATGGGGT
TGGACGCTGCCGAGGAGCGGAGTTGGGAACCCGTGTCCACCATCCATGAG
GATGTTGCGGCATATCTCAGGCGCAAGCTGAAGAAAATGCGGCTGGATGC
AAGTATAAGGGCAGATCACGAG
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