mRNA_H-paniculata_contig8007.16034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8007.16034.1
Unique NamemRNA_H-paniculata_contig8007.16034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: M2UFG2_COCH5 (Uncharacterized protein (Fragment) n=2 Tax=Cochliobolus heterostrophus TaxID=5016 RepID=M2UFG2_COCH5)

HSP 1 Score: 68.9 bits (167), Expect = 2.060e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    1 VTLLLGAYAEVNARDDQRRTPLHYCSEIGSTAVMNT-----SNAKKAAHKGDQCHYSYCLF--------VGAQQELISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVD 312
            V LLL   A+++ARDD+ RTPL++ SE G   ++       +   K   KG    ++ C F        +   + L++ KADIDA+D  + TPL  A+  G+++ VE LLE GA+V+
Sbjct:  233 VKLLLAKKADIDARDDEWRTPLYFASEGGHLQLVEALLEEGAEVNKQCKKGMTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDYQMRTPLYFASEGGHLQLVEALLEEGADVN 349          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: UPI00096AEBCB (uncharacterized protein LOC109586804 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096AEBCB)

HSP 1 Score: 61.2 bits (147), Expect = 7.490e-9
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 1
Query:   28 EVNARDDQRRTPLHYCSEIGSTAVMN---TSNAKKAAHKGDQCHYSYCLFVGAQQELISF-----KADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVDTRDTD 327
            +VN  D ++RTPL    + GS   ++   T+ AK      D     +C     + E++ F       D++ KD +  TPL  A  +G+VEAVEILL+ GAN D  D D
Sbjct:   12 DVNVSDKRKRTPLFNAVKSGSIEAVDILLTNGAKTDVVSNDGVTLLHCAGESGKVEMLEFWIRRGDYDVNVKDKNNRTPLFNAVTSGSVEAVEILLDNGANTDVVDKD 119          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: A0A1X7TP59_AMPQE (Death domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TP59_AMPQE)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-8
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 1
Query:   28 EVNARDDQRRTPLHYCSEIGSTAVMN---TSNAKKAAHKGDQCHYSYCLFVGAQQELISF-----KADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVDTRDTD 327
            +VN  D ++RTPL    + GS   ++   T+ AK      D     +C     + E++ F       D++ KD +  TPL  A  +G+VEAVEILL+ GAN D  D D
Sbjct:  417 DVNVSDKRKRTPLFNAVKSGSIEAVDILLTNGAKTDVVSNDGVTLLHCAGESGKVEMLEFWIRRGDYDVNVKDKNNRTPLFNAVTSGSVEAVEILLDNGANTDVVDKD 524          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: A0A3Q4GH46_NEOBR (Protein phosphatase 1, regulatory subunit 16B n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4GH46_NEOBR)

HSP 1 Score: 57.0 bits (136), Expect = 3.920e-7
Identity = 44/121 (36.36%), Postives = 55/121 (45.45%), Query Frame = 1
Query:    1 VTLLLGAYAEVNARDDQRRTPLHY---CSEIGSTAVMNTSNAKKAAHKGDQCHYSYC-----LFVGAQQELISFKADIDAKDS---SLETPLSKAAWAGNVEAVEILLEAGANVDTRDTDG 330
            V LLL   A VNA+D++  TPLH    C   G   ++       +  K    +Y  C     L VG  Q +I        K S   SL   L  AA  G  +A E+LLE GA VD RD+DG
Sbjct:  107 VKLLLDRGASVNAQDNELWTPLHAAATCGHAGLVKILIFGGYMLSYQKAPVAYYKVCIEEFHLSVGLPQTIILIVDYTGGKQSLFPSLLLQLHIAAANGYAQAAELLLEGGARVDLRDSDG 227          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: UPI000349C9DD (ankyrin repeat domain-containing protein n=1 Tax=Baaleninema simplex TaxID=2862350 RepID=UPI000349C9DD)

HSP 1 Score: 54.7 bits (130), Expect = 2.560e-6
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 VTLLLGAYAEVNARDDQRRTPLHYCSEIGSTAVMNTSNAKKAAHKG----DQCHYSYCLFVGAQQELISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVDTRD 321
            + LLL   A  NA+     T L   +EIG  A++    A  A+H G    + C  +    +   Q L++   D +  D    T L++AA +G VEA+ +LLEAGA+V+  D
Sbjct:  356 IELLLNGGANPNAKSQYGDTALTRAAEIGDRAIVERLQAAGASHDGLDVIELCIAAEQGDLDRLQRLLAAGVDPNRADFRRRTALAQAAGSGQVEAMRVLLEAGADVNGSD 466          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: A0A812JPK8_9DINO (INVS protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812JPK8_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 6.940e-6
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 1
Query:   16 GAYAEVNARDDQRRTPLHYCSEIGSTAVMNTSNAKKAAHKGDQCHYS--------------YCLFV---GAQQELISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVD 312
              + +V+ RD+   TP+ Y + +G  A++ +S  +K A   D    S               C+F+   GA + L+  KAD +A D    TP+  A    NVEA++IL +AGANVD
Sbjct:   27 NGFRDVSDRDEAGWTPICYAA-LGGNAMLLSSLVEKKADPRDSITKSDPKLFMTSGATLLTMCVFLRHHGALRLLLERKADANATDGFTSTPMHYACVNHNVEAIQILRDAGANVD 141          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: E4ZLH1_LEPMJ (Similar to proteasome regulatory particle subunit (Nas6) n=1 Tax=Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) TaxID=985895 RepID=E4ZLH1_LEPMJ)

HSP 1 Score: 52.0 bits (123), Expect = 1.550e-5
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 1
Query:    1 VTLLLGAYAEVNARDDQRRTPLHYCSEIGSTAVMNTSNAKKAA------HKGDQCHYSYCLFVGA---QQELISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVDTRDTDGHL 336
            V LLL   A+VNA+++  +T LH+C+   +  +  T  A+K A       K  Q        VG+    + L+  K+ +DA D    T L  A   G+ +A  +LL  GA+   +D DGH+
Sbjct:   91 VDLLLSKEADVNAKNNNGQTALHFCASKINLDIARTLLAQKPAASARIKDKRGQLPLHRAASVGSVPMMKALLDAKSPLDATDMDGMTALHHAMSEGHGDAALLLLTKGADFCKKDKDGHV 211          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: A0A8D0A944_SANLU (Ankyrin repeat and BTB domain containing 2 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8D0A944_SANLU)

HSP 1 Score: 52.4 bits (124), Expect = 1.730e-5
Identity = 40/104 (38.46%), Postives = 49/104 (47.12%), Query Frame = 1
Query:    4 TLLLGAYAEVNARDDQRRTPLHYCSEIGSTAVMNT---SNAKKAAHKGDQCHYSYCLFVGAQQELISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGAN 306
            T LLGA   VN  DDQ  TPL Y S  G  A++     + A       D    S C  +      +   A +DA+ SS ETPL  AA AG  E V +LL  GA+
Sbjct:  502 TQLLGAEG-VNTMDDQGMTPLMYASAAGDEALVQMLVEAGANLDLQMCDGVLSSCCQLLLEAGADVEGGAQLDAQQSSAETPLQLAAAAGYYEMVSLLLTHGAD 604          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: F2UBL9_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UBL9_SALR5)

HSP 1 Score: 52.0 bits (123), Expect = 2.380e-5
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  187 LISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVDTRDTDG 330
            L S + D+DAKD+SL TPL  A + GN E V  LL+AGANVD +D  G
Sbjct:  463 LSSPEIDVDAKDTSLRTPLHNATFIGNAEIVGQLLDAGANVDAQDAMG 510          
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Match: A0A425BRK2_9PEZI (Uncharacterized protein n=1 Tax=Scytalidium sp. 3C TaxID=2487125 RepID=A0A425BRK2_9PEZI)

HSP 1 Score: 50.4 bits (119), Expect = 8.350e-5
Identity = 32/116 (27.59%), Postives = 56/116 (48.28%), Query Frame = 1
Query:   28 EVNARDDQRRTPLHYCSEIGSTAVMNTSNAKKAAHKGDQCH----YSYCLFVGAQQELISF----------KADIDAKDSSLETPLSKAAWAGNVEAVEILLEAGANVDTRDTDGH 333
            ++NA+D +  TPLH  + +    V +   A   A+ G + H          +G Q  +++           + D++  D +  TPL +A  +G  E+V IL+ AGA++D RD+  H
Sbjct:  416 DINAQDSEGYTPLHLAAVVSEPRVFSLIQA--GANPGAKSHNXXXXXXXXXLGRQSGILAMIIHLSKDLNLEIDVNGTDVNGRTPLHEACRSGCPESVRILVNAGADIDARDSSNH 529          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8007.16034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
M2UFG2_COCH52.060e-1135.90Uncharacterized protein (Fragment) n=2 Tax=Cochlio... [more]
UPI00096AEBCB7.490e-935.19uncharacterized protein LOC109586804 n=1 Tax=Amphi... [more]
A0A1X7TP59_AMPQE1.310e-835.19Death domain-containing protein n=1 Tax=Amphimedon... [more]
A0A3Q4GH46_NEOBR3.920e-736.36Protein phosphatase 1, regulatory subunit 16B n=1 ... [more]
UPI000349C9DD2.560e-633.33ankyrin repeat domain-containing protein n=1 Tax=B... [more]
A0A812JPK8_9DINO6.940e-632.76INVS protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
E4ZLH1_LEPMJ1.550e-531.40Similar to proteasome regulatory particle subunit ... [more]
A0A8D0A944_SANLU1.730e-538.46Ankyrin repeat and BTB domain containing 2 n=1 Tax... [more]
F2UBL9_SALR52.380e-556.25Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A425BRK2_9PEZI8.350e-527.59Uncharacterized protein n=1 Tax=Scytalidium sp. 3C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8007contigH-paniculata_contig8007:10228..10626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.3
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog5016.M2UFG2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeat
EggNOG OGs3AP0D@33154,3PEN5@4751,3R445@4890,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.679136-CDS-H-paniculata_contig8007:10227..104591622931001.679136-CDS-H-paniculata_contig8007:10227..10459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 10228..10459 -
1691481545.7262056-CDS-H-paniculata_contig8007:10227..104591691481545.7262056-CDS-H-paniculata_contig8007:10227..10459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 10228..10459 -
1622931001.7002797-CDS-H-paniculata_contig8007:10522..106261622931001.7002797-CDS-H-paniculata_contig8007:10522..10626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 10523..10626 -
1691481545.7354522-CDS-H-paniculata_contig8007:10522..106261691481545.7354522-CDS-H-paniculata_contig8007:10522..10626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 10523..10626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8007.16034.1prot_H-paniculata_contig8007.16034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8007 10228..10626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8007.16034.1

>prot_H-paniculata_contig8007.16034.1 ID=prot_H-paniculata_contig8007.16034.1|Name=mRNA_H-paniculata_contig8007.16034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
VTLLLGAYAEVNARDDQRRTPLHYCSEIGSTAVMNTSNAKKAAHKGDQCH
YSYCLFVGAQQELISFKADIDAKDSSLETPLSKAAWAGNVEAVEILLEAG
ANVDTRDTDGHL
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mRNA from alignment at H-paniculata_contig8007:10228..10626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8007.16034.1 ID=mRNA_H-paniculata_contig8007.16034.1|Name=mRNA_H-paniculata_contig8007.16034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig8007:10228..10626- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACGCTTTTGCTGGGTGCATACGCTGAGGTTAACGCAAGAGACGATCA GCGCCGGACACCCCTTCATTATTGCAGCGAGATCGGATCCACTGCCGTCA TGAAGTTGAGTCCACCATCTTCAGGTTGAGAAACATCCCAGCTATCCAGC TACTGACTCCGCGAAAGTACGAGCAATGCAAAAAAGGCGGCACATAAGGG GGATCAATGTCACTATTCTTATTGCCTGTTTGTCGGTGCTCAACAGGAGC TAATATCTTTCAAAGCAGACATCGACGCCAAAGATAGCAGCCTCGAAACC CCTCTAAGCAAAGCAGCATGGGCAGGCAACGTAGAAGCGGTGGAAATCCT CCTCGAAGCAGGTGCGAACGTCGACACCAGGGACACGGATGGTCACCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig8007:10228..10626-

>mRNA_H-paniculata_contig8007.16034.1 ID=mRNA_H-paniculata_contig8007.16034.1|Name=mRNA_H-paniculata_contig8007.16034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig8007:10228..10626- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACGCTTTTGCTGGGTGCATACGCTGAGGTTAACGCAAGAGACGATCA
GCGCCGGACACCCCTTCATTATTGCAGCGAGATCGGATCCACTGCCGTCA
TGAAGTTACGCTTTTGCTGGGTGCATACGCTGAGGTTAACGCAAGAGACG
ATCAGCGCCGGACACCCCTTCATTATTGCAGCGAGATCGGATCCACTGCC
GTCATGAATACGAGCAATGCAAAAAAGGCGGCACATAAGGGGGATCAATG
TCACTATTCTTATTGCCTGTTTGTCGGTGCTCAACAGGAGCTAATATCTT
TCAAAGCAGACATCGACGCCAAAGATAGCAGCCTCGAAACCCCTCTAAGC
AAAGCAGCATGGGCAGGCAACGTAGAAGCGGTGGAAATCCTCCTCGAAGC
AGGTGCGAACGTCGACACCAGGGACACGGATGGTCACCTTTACGAGCAAT
GCAAAAAAGGCGGCACATAAGGGGGATCAATGTCACTATTCTTATTGCCT
GTTTGTCGGTGCTCAACAGGAGCTAATATCTTTCAAAGCAGACATCGACG
CCAAAGATAGCAGCCTCGAAACCCCTCTAAGCAAAGCAGCATGGGCAGGC
AACGTAGAAGCGGTGGAAATCCTCCTCGAAGCAGGTGCGAACGTCGACAC
CAGGGACACGGATGGTCACCTT
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