mRNA_H-paniculata_contig8000.16029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8000.16029.1
Unique NamemRNA_H-paniculata_contig8000.16029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: D8LE11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE11_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.430e-32
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 GWLRRNPSQHPYLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVCPHGSR 195
            GWLRR+PS+HPYLP+ C RVILPGPGGE+LD+C +GRSCP AHSLEEIQYH Q+YK+QVCPHGS+
Sbjct:  576 GWLRRDPSKHPYLPRLCERVILPGPGGEYLDDCARGRSCPNAHSLEEIQYHHQSYKTQVCPHGSK 640
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: A0A6H5L5K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.380e-28
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 GWLRRNPSQHPYLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVCPHGSR 195
            GWLRR+PS+HPYLP+ C R+ILPGPGGE+LD+CT+GRSCP AHSLEEIQYH      QVCPHGS+
Sbjct:   29 GWLRRDPSKHPYLPRLCERIILPGPGGEYLDDCTRGRSCPNAHSLEEIQYH-----HQVCPHGSK 88
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: A0A1Z5K206_FISSO (C3H1-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K206_FISSO)

HSP 1 Score: 60.8 bits (146), Expect = 3.020e-9
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:    1 GWLRRNPSQHPYLPKRC---------SRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVC 180
            GWLRRNP+   Y  + C         S+V++       L EC  G  CP AHSLEE+ YHP  YK+++C
Sbjct:  413 GWLRRNPAVFEYSEEMCPFVHKLQKDSKVLV-------LHECPNGIRCPKAHSLEEVAYHPNQYKTRIC 474
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: A0A0G4HRF8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HRF8_9ALVE)

HSP 1 Score: 50.8 bits (120), Expect = 1.040e-5
Identity = 25/65 (38.46%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:    4 WLRRNP------SQHPYLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVC 180
            W RR P      S   Y+P  C  + +        ++CT+G SCP AH+ EE+ YHP AYK+  C
Sbjct:   28 WQRRCPYYISDQSSLRYIPVICRDITVTEEDKILRNDCTQGGSCPFAHTHEEVNYHPLAYKTVNC 92
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: L0ATY1_THEEQ (Uncharacterized protein n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0ATY1_THEEQ)

HSP 1 Score: 49.7 bits (117), Expect = 1.710e-5
Identity = 22/51 (43.14%), Postives = 27/51 (52.94%), Query Frame = 1 
Query:   34 YLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVCPH 186
            Y+P  CS V+L          C  G  C  +HSL+EI YHPQ YK+  C H
Sbjct:   58 YIPLFCSHVVLGQNYKTIKSNCPFGNECIYSHSLDEILYHPQFYKTITCEH 108
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: Q4UDI0_THEAN (Uncharacterized protein n=3 Tax=Theileria TaxID=5873 RepID=Q4UDI0_THEAN)

HSP 1 Score: 48.1 bits (113), Expect = 8.700e-5
Identity = 21/51 (41.18%), Postives = 26/51 (50.98%), Query Frame = 1 
Query:   34 YLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVCPH 186
            Y+P  CS V+           C  G  C  +HSL+EI YHPQ YK+  C H
Sbjct:   72 YIPLFCSHVVFTQNFKTVKSNCPFGNECIYSHSLDEILYHPQFYKTITCEH 122
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BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Match: A0A0G4H0G4_VITBC (C3H1-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H0G4_VITBC)

HSP 1 Score: 48.1 bits (113), Expect = 9.400e-5
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    4 WLRRNP-----SQHPYLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQYHPQAYKSQVCP 183
            W RR P     ++  Y+   C +V +   G     +C  G  C  AHS+EEI YHP+ YK+++CP
Sbjct:   98 WRRRPPLFPRCNKLRYVSLLCPKVQMKQ-GTILRSDCEAGEDCLFAHSMEEIMYHPEFYKTRLCP 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8000.16029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LE11_ECTSI5.430e-3278.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5K1_9PHAE6.380e-2873.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z5K206_FISSO3.020e-942.03C3H1-type domain-containing protein n=1 Tax=Fistul... [more]
A0A0G4HRF8_9ALVE1.040e-538.46Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
L0ATY1_THEEQ1.710e-543.14Uncharacterized protein n=1 Tax=Theileria equi str... [more]
Q4UDI0_THEAN8.700e-541.18Uncharacterized protein n=3 Tax=Theileria TaxID=58... [more]
A0A0G4H0G4_VITBC9.400e-536.92C3H1-type domain-containing protein n=1 Tax=Vitrel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8000contigH-paniculata_contig8000:4731..7162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.1e-27
Seed eggNOG ortholog2880.D8LE11
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000981,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
EggNOG free text desc.DNA binding
EggNOG OGsKOG1595@1,KOG1595@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.032658-CDS-H-paniculata_contig8000:4731..47671622931001.032658-CDS-H-paniculata_contig8000:4731..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 4732..4767 -
1691481545.52504-CDS-H-paniculata_contig8000:4731..47671691481545.52504-CDS-H-paniculata_contig8000:4731..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 4732..4767 -
1622931001.0489132-CDS-H-paniculata_contig8000:7003..71621622931001.0489132-CDS-H-paniculata_contig8000:7003..7162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 7004..7162 -
1691481545.5377223-CDS-H-paniculata_contig8000:7003..71621691481545.5377223-CDS-H-paniculata_contig8000:7003..7162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 7004..7162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8000.16029.1prot_H-paniculata_contig8000.16029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8000 4732..7162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8000.16029.1

>prot_H-paniculata_contig8000.16029.1 ID=prot_H-paniculata_contig8000.16029.1|Name=mRNA_H-paniculata_contig8000.16029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
GWLRRNPSQHPYLPKRCSRVILPGPGGEFLDECTKGRSCPAAHSLEEIQY
HPQAYKSQVCPHGSR
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mRNA from alignment at H-paniculata_contig8000:4731..7162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8000.16029.1 ID=mRNA_H-paniculata_contig8000.16029.1|Name=mRNA_H-paniculata_contig8000.16029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2432bp|location=Sequence derived from alignment at H-paniculata_contig8000:4731..7162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGGCTCCGTCGAAATCCTTCGCAGCACCCATACTTGCCGAAACGCTG
CTCCCGAGTAATTTTGCCTGGCCCCGGAGGGGAATTTTTGGACGAGTGCA
CCAAAGGGAGATCGTGTCCAGCTGCCCATAGTCTGGAGGAGATACAGTAC
CACCCTCAGGTTAGATAGGCGTTAGGTGCTACTGTACTGAACATAGACGA
GTGACGCGCGTGATACCTTGTTTGACATTTTTGTAAATAATAACTGTTAT
ATAGTACGCGTAACGTGGTAATAGTGATAATAATCACAAGGGTGTCCATA
TATATATATTTTTTCCAATTCTCTAAGGAGCTGCGAGGAAGCCTTTGTCT
AACACCAGAATATTTGCGGAACAACAAATTCCTTTTGAACATTTTGATTT
GGGCCGTGTGCATCTAACTAACAGTAGCTCCTCGTGTCGGATCCCGGTTC
ACCCACGGTCTTGTTACAAAACGAAGTCCTCGTTACAACCAGAGTCTATT
CCTACTCTCACGAAAGATACGAATTTTCGACGAGAAAATCCTTTCGTAAC
GAGACGTTGGCATGGATCAGCTGGAGTCCGGCACGAGGAGGTCACTGTTA
TCGGTACACGACCAAATCGAAATTCGTAAAGGGCATTCGTTTTGTGCAAA
CAAACGTCCTACTTATACCCCCCAATACTCGGGTCAAATGTGCCAGCTAC
CGTGAGGCCCGGCTAGCCTGCCCTGCGGTAGACACATGAATTAGGCACCG
CCGAGTTCTCGCGAGACTTTGCTCAGTGTAGTGTGGGACTCGCACCCACT
AAAGGTCAGTTCTAGCGACCTCGTTTTTGGCGTTAATTATGAAAAATGGC
AATTTCAGAATTAAGGTGTGCGACGCGAAAATAGACAAATTCCTAGATCA
AAATCCCCAACGGGTCGATTTTGTTGATTTAACCCAGAATTTCCTCTCCC
CCCGGTTGTTGGGGATTTTGAACTATGTGAATTTCGGCCTGTTTCACGTT
CCAGGCAAATTTTTCCAGATTTCCAAATTTTACAATTTTGGCCAAAAATA
TCGTCGCTAGAACTGAACCCGAACCCCTCTCTGATGTGTCCCTCCTCAAT
TTGGCTCAGTGCACGAGCCACCTTACCTGAGCGGGCTGCGGTCCTAGGCT
GAGGGTTCTGGGTTGCTTAATATTTTTCAGTTAAATGTAACATAAATTCA
AGAACAGAATTATTAAAAATATATACTTTATCAGGAAACTTGTAAAAAAG
ATGATTAAATATCCAATATTATCGTCTGTAACAATCAGATCTATTAATAG
TAGGGAACAACAAACTATTAGAATTGCCATCAAAAGTTTCATGAAAAAAG
GATAAAAGAAAAACTTAATTTTGAAGTTATTTGAATAATCTGTAGAGTTG
CTGATTGAGAAAAGTCATGGTTTGTGTTTTTCTTTCAAGATTTGAATTTA
GCTTGAAACAAGAAGAAGTAATATGGCTCTGTCATATGAATTGGAGTCCA
GCACTTGAGGCATCCCTCACAAATGGTACTTACTCCCTGATGATGTACAT
TGAATAAAACGTGAAAAAGCCGCAAATGTTGACGTCTGGGTCTGCCGCGT
TACAAGCTGACTACGCGTTGTTGTTTCCAGCCCCTCGTTCAATCTTTTAA
CAGTTCGGGCGTTTTTACCTGTTTTAGCCCTGGCTGCTGTGTTGTAAGGC
GCAGACTTGCCGTTTGCCTGGGGCTTTATTGGGTCTTCGTTGAGAGAATA
TTTCATGTTCATACGGTATGACATGGTCAGCGTTTCAGTGTATTTACCGA
TGTATATAGGACACTGCAGTATGCTTAGGCTATTGCATTCACTGATCCAA
CCTCTGGAGTATATCATTATAGTGCAGTACAGTCAGGTACACTACAGTAC
ATTGCGGTGCCACAAGGACAGTCATGCGACACATTGGTCAGTAATATAGT
GCAGTCGCTTGTGATACAGTCAATTATGGTACTATCATATGTCGTGTCGC
TCATTTCCATCAGAACGTTTAGTGAGTAATGCGGGACGTGTATGTAAATT
TATTGTTTAAAAAATTATGCGTAGTTGTTGCTGCTGCTTTAATAGTCTTT
AGCTTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTTGGTTTGGTTT
GGTTTGGTTTGGTTTGGTTTGGTTTTATAGAATCATGCCCTCAGTACGAT
AGTACTAAAAATCACTTGAGCATTCCTCCAATTTGATTCATACGTTCTTG
GCATATGTTTTCTGTTTGCATTGTCGTACAAGTTTGTATACGTGTCAACC
CATATCTCCATGTTGTTTGTGCATACTGGCTGTCGTATTCCCAACCTTAC
TTTCCCCTGTCCTCCCCACCCCTTTCATTCTCTCTCACCACCCAGGCCTA
CAAGAGCCAGGTATGTCCTCACGGGAGCAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig8000:4731..7162-

>mRNA_H-paniculata_contig8000.16029.1 ID=mRNA_H-paniculata_contig8000.16029.1|Name=mRNA_H-paniculata_contig8000.16029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig8000:4731..7162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGGCTCCGTCGAAATCCTTCGCAGCACCCATACTTGCCGAAACGCTG
CTCCCGAGTAATTTTGCCTGGCCCCGGAGGGGAATTTTTGGACGAGTGCA
CCAAAGGGAGATCGTGTCCAGCTGCCCATAGTCTGGAGGAGATACAGTAC
CACCCTCAGGGCTGGCTCCGTCGAAATCCTTCGCAGCACCCATACTTGCC
GAAACGCTGCTCCCGAGTAATTTTGCCTGGCCCCGGAGGGGAATTTTTGG
ACGAGTGCACCAAAGGGAGATCGTGTCCAGCTGCCCATAGTCTGGAGGAG
ATACAGTACCACCCTCAGGCCTACAAGAGCCAGGTATGTCCTCACGGGAG
CAGAGCCTACAAGAGCCAGGTATGTCCTCACGGGAGCAGA
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