mRNA_H-paniculata_contig7998.16015.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7998.16015.1
Unique NamemRNA_H-paniculata_contig7998.16015.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7998.16015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7998contigH-paniculata_contig7998:203..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7998.16015.1prot_H-paniculata_contig7998.16015.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7998 400..795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.031405-UTR-H-paniculata_contig7998:202..3991622930998.031405-UTR-H-paniculata_contig7998:202..399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7998 203..399 +
1691481544.020374-UTR-H-paniculata_contig7998:202..3991691481544.020374-UTR-H-paniculata_contig7998:202..399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7998 203..399 +
1622930998.079925-UTR-H-paniculata_contig7998:795..9311622930998.079925-UTR-H-paniculata_contig7998:795..931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7998 796..931 +
1691481544.0541327-UTR-H-paniculata_contig7998:795..9311691481544.0541327-UTR-H-paniculata_contig7998:795..931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7998 796..931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.0578768-CDS-H-paniculata_contig7998:399..7951622930998.0578768-CDS-H-paniculata_contig7998:399..795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7998 400..795 +
1691481544.0400395-CDS-H-paniculata_contig7998:399..7951691481544.0400395-CDS-H-paniculata_contig7998:399..795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7998 400..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7998.16015.1

>prot_H-paniculata_contig7998.16015.1 ID=prot_H-paniculata_contig7998.16015.1|Name=mRNA_H-paniculata_contig7998.16015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MACTWSRPMNPHAVGKPPWRSAPKQLYLRPPRRKRFRVEHKPFSGQNIHC
HHTVYQKNKPRPIGSNAKQHRWASVLCAINRDLAFRVSSQVLEGCTVPCL
WDSCFLSPPNSKNDRVELFQDDRSIIVEAEF*
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mRNA from alignment at H-paniculata_contig7998:203..931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7998.16015.1 ID=mRNA_H-paniculata_contig7998.16015.1|Name=mRNA_H-paniculata_contig7998.16015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at H-paniculata_contig7998:203..931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGAACATCTCCGGGTATACATCATATTCTCCGACACCACAACAACA
GGTGATCTTCACTCGTGTTTTGGTCGGGACACACGACGAACCCGTATTGA
GGACACTGACAACATCATGTACTTTTTTTATTCATCGACATGAACCTTCC
GGGTGATCGGTCGCTGGCCTACCGAAGAAAGAACCCACGCCCCTATCATG
GCATGTACTTGGTCCAGACCCATGAATCCCCACGCTGTGGGGAAACCACC
CTGGCGATCGGCACCAAAACAGTTATACCTCCGCCCCCCCCGGCGAAAGC
GATTCCGGGTGGAGCATAAACCTTTCTCGGGACAAAACATTCATTGTCAC
CATACTGTGTACCAAAAAAACAAACCTCGCCCAATCGGATCGAACGCCAA
ACAACATCGATGGGCATCTGTCCTGTGTGCGATAAATCGAGACCTCGCTT
TCCGCGTATCATCTCAAGTTCTTGAAGGCTGCACTGTTCCGTGCCTATGG
GACTCCTGTTTCCTCTCTCCACCCAACAGCAAGAACGATCGCGTGGAACT
ATTTCAAGACGACAGAAGCATCATCGTGGAGGCCGAATTTTAATATCATT
CCATCCTTGCGTCGTCATTCATGCTGTGAGAAGGCGCTAGGTATTAGATG
CTGTAAACTTAGGTGTTATAAGGTCCAATCGACCCAGTCTCGCAAACCTT
GTGTAGTAGAGGTAGTTGATGAACTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7998:203..931+

>mRNA_H-paniculata_contig7998.16015.1 ID=mRNA_H-paniculata_contig7998.16015.1|Name=mRNA_H-paniculata_contig7998.16015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig7998:203..931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATGTACTTGGTCCAGACCCATGAATCCCCACGCTGTGGGGAAACC
ACCCTGGCGATCGGCACCAAAACAGTTATACCTCCGCCCCCCCCGGCGAA
AGCGATTCCGGGTGGAGCATAAACCTTTCTCGGGACAAAACATTCATTGT
CACCATACTGTGTACCAAAAAAACAAACCTCGCCCAATCGGATCGAACGC
CAAACAACATCGATGGGCATCTGTCCTGTGTGCGATAAATCGAGACCTCG
CTTTCCGCGTATCATCTCAAGTTCTTGAAGGCTGCACTGTTCCGTGCCTA
TGGGACTCCTGTTTCCTCTCTCCACCCAACAGCAAGAACGATCGCGTGGA
ACTATTTCAAGACGACAGAAGCATCATCGTGGAGGCCGAATTTTAAATGG
CATGTACTTGGTCCAGACCCATGAATCCCCACGCTGTGGGGAAACCACCC
TGGCGATCGGCACCAAAACAGTTATACCTCCGCCCCCCCCGGCGAAAGCG
ATTCCGGGTGGAGCATAAACCTTTCTCGGGACAAAACATTCATTGTCACC
ATACTGTGTACCAAAAAAACAAACCTCGCCCAATCGGATCGAACGCCAAA
CAACATCGATGGGCATCTGTCCTGTGTGCGATAAATCGAGACCTCGCTTT
CCGCGTATCATCTCAAGTTCTTGAAGGCTGCACTGTTCCGTGCCTATGGG
ACTCCTGTTTCCTCTCTCCACCCAACAGCAAGAACGATCGCGTGGAACTA
TTTCAAGACGACAGAAGCATCATCGTGGAGGCCGAATTTTAA
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