mRNA_H-paniculata_contig7990.16008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7990.16008.1
Unique NamemRNA_H-paniculata_contig7990.16008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A6H5J7V5_9PHAE (VHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7V5_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 4.400e-93
Identity = 147/188 (78.19%), Postives = 166/188 (88.30%), Query Frame = 2 
Query:  470 MTSLFRIPPPMDDQTRTRCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDPGGGSLLDRP 1033
            M SLFRI PPMDD  RTRCDA+M+ VE AC +ML+SP+WTLNMQIVD+LN+EQDPVV++EV+RILRKKLGS N  +LSV LTLAETLVKNC   VH E+ASERFM A+AKIART+SFK +R S+ ++DQSLDIIQAWGEAFLPRRREFPL V+TYHELRAEGLPFS QYQSDRPPVLDPG GSLLDRP
Sbjct:    1 MASLFRIAPPMDDSARTRCDAMMKDVESACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNTTVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKPNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDPGAGSLLDRP 188
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A835YSD0_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.640e-54
Identity = 94/181 (51.93%), Postives = 136/181 (75.14%), Query Frame = 2 
Query:  488 IPPPMDDQTRTRCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP-GGGSLLD 1027
            +PP M D  +++ + L++ V+ ACS+ L S +W LNMQ+VDE+N  +  VVV+EVVR +RK+L   ++ ++ + LTL ETLVKNCG  +H E+A E FM  M  +A+ H+ +TSR+S+ +++++LD+IQ+WGEAFLP+RRE PL V+TYH LR +GLPF  QY++DR PVL+P G GSLLD
Sbjct:   12 VPPLMTDAEKSKSETLVRMVDSACSEFLTSADWALNMQLVDEINNSRQQVVVAEVVRAVRKRLAHKSIPVVMLALTLTETLVKNCGMPLHREIAKENFMQDMTVLAKRHTTRTSRESLQVANKTLDLIQSWGEAFLPQRRELPLFVETYHRLRKDGLPFDAQYKADRAPVLEPVGPGSLLD 192
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A4D9CTC8_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTC8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 7.780e-40
Identity = 70/154 (45.45%), Postives = 110/154 (71.43%), Query Frame = 2 
Query:  545 VEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP 1006
            VE A SD+L++ +W +NM++VD LN+  +  V  E++R +RK+L   + R++ + L L ET+VKNCGP VH EVA+ +FM  MA++ART+S +T ++++ ++D+++D+IQ+WGEAFLP   + PL   TYH+LR EGL F  QY   + P++ P
Sbjct:   30 VEKATSDILLAVDWAMNMEVVDALNRSSEQAVKREIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVHKEVATPKFMATMARVARTYSERTGKENLQVADKAMDLIQSWGEAFLPMAHQLPLFSQTYHQLRREGLTFRTQYDETKVPIMTP 183
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A7S2HS54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HS54_9STRA)

HSP 1 Score: 147 bits (371), Expect = 6.390e-39
Identity = 69/142 (48.59%), Postives = 99/142 (69.72%), Query Frame = 2 
Query:  542 HVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTS-RDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPF 964
            H++ A SD L + +W+ NMQ+VDE+N  +   V+ E  R +RKKL S NVR++ + L L ETLVKNC    H  +A+ +FM  ++++ART++ + S RD M + D+ L++IQ+WGEAFLP R   PL V+TYH+LR EGLPF
Sbjct:   42 HIDQATSDYLQTADWSANMQLVDEINAIRTQAVIDETARSIRKKLQSKNVRVVKLALMLIETLVKNCNVAFHQAIATTKFMETISRVARTYTKRNSKRDEMEIGDKVLELIQSWGEAFLPHRDTMPLFVETYHKLRKEGLPF 183
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A2P4YGK1_9STRA (VHS domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGK1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.980e-37
Identity = 82/200 (41.00%), Postives = 120/200 (60.00%), Query Frame = 2 
Query:  521 RCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDPGGGSLLDRPTASSNLPGSKSAGGSHSRSGSSAGTVATV 1120
            R   + + +  A SD     +W   +++VD L+   +  V+ E +R L+ +LG  + R++ + LTL E++VKNCG  VH E+A+E FM  M  + R H+ K  RDSM ++ + LD+IQAWGEAFLP R EFPL VDTYH +R +G+ F +QY   + PVL P   S   R TAS+   GS     S+S + S  G ++T+
Sbjct:   31 RIKQMTEMIAQATSDYEADEDWDRILRVVDALSNISNRAVLKESIRYLKLRLGDASSRVVILALTLTESVVKNCGDLVHQEIATESFMGEMEALHRLHANKRGRDSMEIASRVLDMIQAWGEAFLPFRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTPPDAS--GRSTASNQTLGSIDTS-SYSNTSSGLGGLSTL 227
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: G5AI13_PHYSP (VHS domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AI13_PHYSP)

HSP 1 Score: 149 bits (377), Expect = 1.900e-36
Identity = 71/162 (43.83%), Postives = 103/162 (63.58%), Query Frame = 2 
Query:  521 RCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP 1006
            R   +   +E A SD     +W   +++VD L+   +  V+ E +R L+ +LG  + R++ + LTL E++VKNCG  VH E+A+E FM  M  + RTH+ K  RDSM ++ + LD++QAWGEAFLP R EFPL VDTYH +R +G+ F +QY   + PVL P
Sbjct:   42 RIKQMTDMIEQATSDFEADEDWDRILRVVDALSNVSNHAVLKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEPFMSEMEALYRTHASKRGRDSMEIASRVLDMVQAWGEAFLPYRHEFPLFVDTYHNMRKKGIKFPDQYDETKVPVLTP 203
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: H3H7R0_PHYRM (VHS domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7R0_PHYRM)

HSP 1 Score: 148 bits (373), Expect = 7.170e-36
Identity = 81/190 (42.63%), Postives = 117/190 (61.58%), Query Frame = 2 
Query:  554 ACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP------GGGSLLDRPTASSNLPGSKSAGGSHSRSGSSAG 1105
            A SD     +W   +++ D L+   +  V+ E +R L+ +LG  + R++ + LTL E++VKNCG  VH EVA+E FM  M  + RTH+ K  R+SM ++ + LD++QAWGEAFLP R EFPL VDTYH +R +G+ F +QY   + PVL P      GG S +   +ASSN P +  +  + S S SS+G
Sbjct:   54 ATSDYEADEDWDRILRVTDALSSVSNRAVLKESIRYLKLRLGDPSTRVVILALTLTESIVKNCGDLVHQEVATEPFMGEMEALYRTHANKRGRESMEIASRVLDMVQAWGEAFLPFRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTPPPDVPSGGRSGVSNRSASSNQPHASGSIDTSSYSSSSSG 243
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A6A3KF79_9STRA (VHS domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KF79_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.160e-35
Identity = 82/208 (39.42%), Postives = 123/208 (59.13%), Query Frame = 2 
Query:  521 RCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP------GG--GSLLDRPTASSNLPGSKSAG-GSHSRSGSSAGTVAT 1117
            R   +   +  A SD     +W   +++VD L+   +  V+ E +R L+ +LG  + R++ + LTL E++VKNCG  VH E+A+E FM  M  +  TH+ K  R+SM ++ + LD++QAWGEAFLP R EFPL VDTYH +R +G+ F +QY   + PVL P      GG  G+   R T+S+   GS+S    S+S + S  G ++T
Sbjct:   42 RIKQMTDMIAQATSDFEADEDWDRILRVVDALSNVSNRAVLKESIRYLKLRLGDPSARVIILALTLTESIVKNCGDLVHQEIATEPFMSEMEALYSTHASKRGRESMEIASRVLDMVQAWGEAFLPYRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTPPPDAPSGGRSGAASGRTTSSNQPRGSRSIDTSSYSNTSSGLGGLST 249
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A329S7I2_9STRA (VHS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S7I2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 9.600e-35
Identity = 69/162 (42.59%), Postives = 103/162 (63.58%), Query Frame = 2 
Query:  521 RCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP 1006
            R   +   +  A SD     +W   +++VD L+   +  V+ E +R L+ +LG  + R++ + LTL E++VKNCG  VH E+A+E+FM  M  + RTH+ K  R+SM ++ + LD++QAWGEAFLP R EFPL VDTYH +R +G+ F +QY   + PVL P
Sbjct:   42 RIKQMTDMIAQATSDYEADEDWDRILRVVDALSNVSNRAVLKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMGEMETLYRTHANKRGRESMEIASRVLDMVQAWGEAFLPFRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTP 203
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BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Match: A0A0P1AM73_PLAHL (VHS domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AM73_PLAHL)

HSP 1 Score: 145 bits (365), Expect = 1.160e-34
Identity = 68/162 (41.98%), Postives = 103/162 (63.58%), Query Frame = 2 
Query:  521 RCDALMQHVEDACSDMLMSPNWTLNMQIVDELNQEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVASERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPLIVDTYHELRAEGLPFSEQYQSDRPPVLDP 1006
            R   +   +  A ++     +W   +++VD L+   +  V+ E +R LR +LG  + R++ + LTL E++VKNCG  VH E+A+E+FM  M ++ RTHS K  R SM ++ + LD++QAWGEAFLP R +FPL VDTYH +R +G+ F +QY   + PVL P
Sbjct:   38 RIKQMTDMIAQATNEFEPDEDWNSILRVVDALSNVSNRAVLKESIRYLRLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMSEMEELHRTHSNKRGRQSMEIASRVLDMVQAWGEAFLPFRHDFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTP 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7990.16008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7V5_9PHAE4.400e-9378.19VHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YSD0_9STRA7.640e-5451.93VHS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CTC8_9STRA7.780e-4045.45VHS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2HS54_9STRA6.390e-3948.59Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A2P4YGK1_9STRA5.980e-3741.00VHS domain-containing protein (Fragment) n=1 Tax=P... [more]
G5AI13_PHYSP1.900e-3643.83VHS domain-containing protein n=1 Tax=Phytophthora... [more]
H3H7R0_PHYRM7.170e-3642.63VHS domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3KF79_9STRA4.160e-3539.42VHS domain-containing protein n=3 Tax=Phytophthora... [more]
A0A329S7I2_9STRA9.600e-3542.59VHS domain-containing protein n=2 Tax=Phytophthora... [more]
A0A0P1AM73_PLAHL1.160e-3441.98VHS domain-containing protein n=1 Tax=Plasmopara h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7990contigH-paniculata_contig7990:619..9477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue3.6e-76
Seed eggNOG ortholog2880.D7FWE4
Preferred nameGGA2
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1087@1,KOG1087@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-09_003990.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Exons5
Model size1234
Cds size765
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7990.16008.1prot_H-paniculata_contig7990.16008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7990 619..9008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.8902538-CDS-H-paniculata_contig7990:618..9481622930996.8902538-CDS-H-paniculata_contig7990:618..948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 619..948 -
1691481543.5416102-CDS-H-paniculata_contig7990:618..9481691481543.5416102-CDS-H-paniculata_contig7990:618..948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 619..948 -
1622930996.910428-CDS-H-paniculata_contig7990:1572..16681622930996.910428-CDS-H-paniculata_contig7990:1572..1668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 1573..1668 -
1691481543.5545661-CDS-H-paniculata_contig7990:1572..16681691481543.5545661-CDS-H-paniculata_contig7990:1572..1668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 1573..1668 -
1622930996.9305441-CDS-H-paniculata_contig7990:2655..28241622930996.9305441-CDS-H-paniculata_contig7990:2655..2824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 2656..2824 -
1691481543.5714264-CDS-H-paniculata_contig7990:2655..28241691481543.5714264-CDS-H-paniculata_contig7990:2655..2824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 2656..2824 -
1622930996.9483087-CDS-H-paniculata_contig7990:4812..49241622930996.9483087-CDS-H-paniculata_contig7990:4812..4924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 4813..4924 -
1691481543.5868747-CDS-H-paniculata_contig7990:4812..49241691481543.5868747-CDS-H-paniculata_contig7990:4812..4924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 4813..4924 -
1622930996.9707427-CDS-H-paniculata_contig7990:8950..90081622930996.9707427-CDS-H-paniculata_contig7990:8950..9008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 8951..9008 -
1691481543.600508-CDS-H-paniculata_contig7990:8950..90081691481543.600508-CDS-H-paniculata_contig7990:8950..9008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7990 8951..9008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.990199-UTR-H-paniculata_contig7990:9008..94771622930996.990199-UTR-H-paniculata_contig7990:9008..9477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7990 9009..9477 -
1691481543.6103172-UTR-H-paniculata_contig7990:9008..94771691481543.6103172-UTR-H-paniculata_contig7990:9008..9477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7990 9009..9477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7990.16008.1

>prot_H-paniculata_contig7990.16008.1 ID=prot_H-paniculata_contig7990.16008.1|Name=mRNA_H-paniculata_contig7990.16008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
MTSLFRIPPPMDDQTRTRCDALMQHVEDACSDMLMSPNWTLNMQIVDELN
QEQDPVVVSEVVRILRKKLGSHNVRMLSVGLTLAETLVKNCGPRVHHEVA
SERFMMAMAKIARTHSFKTSRDSMTLSDQSLDIIQAWGEAFLPRRREFPL
IVDTYHELRAEGLPFSEQYQSDRPPVLDPGGGSLLDRPTASSNLPGSKSA
GGSHSRSGSSAGTVATVAAVGGGGGRTGGGDRGGASAAPAATSAAFNPAE
MEEFS
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mRNA from alignment at H-paniculata_contig7990:619..9477-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7990.16008.1 ID=mRNA_H-paniculata_contig7990.16008.1|Name=mRNA_H-paniculata_contig7990.16008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8859bp|location=Sequence derived from alignment at H-paniculata_contig7990:619..9477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTATTACACTGGGCCCCCAAACACCGATAGTCATTCGACATCTTTCCT
TGCGTGCTACGAGCTCTCTTACTTATTCGTAGCTCACGTGTTGGTACGAA
AGTTATCAGTGGCAGGAACAGTGTGGGGGTTGGTGCTAAGCGAAGAGGCG
GCGCACAACTGGCAGAACGCAAACAAACACGGACAGCAGTGACACCTTCA
GAGCAGCTGTACTTCAGACACTAATTTCAGTAGACGCGTTTCACGTCGGA
TATCACGCACTGACGGCAGAGTCTCGCCAACAAGGCTCTTTGCCTCGAGA
GGGCAAGGTTCGGGCGTGGTAGTCGGTTACCTCTGATATCCGGAGTGTTG
AAGAACGTGGGGGAAAGCTTGTTCTCTTGTCGATAAAACATCAAGTTGGA
AAGTTTCTCACGGAGAGGAGCCGCAGCGGGGCGCGTGGTGTGCTGATATT
GGGATAGGAAAGTGACAGCATGACTTCGCTCTTTCGCATACCGCCTCCGA
TGGACGACCAGACTCGGACCAGATGCGGTAAGTGCCATCGAACGGGATAA
CGGCAGAGCGTTTTCAATGGTGTGAGGGTAAACTATCCTCACTAGTTCTG
CTGTCTCCAGATCCATCTCGGCTCTGTGCGGACCATGGCATCGTGGGTCT
TTGAGTCCTTAACCTAGATGGAAAGCTTGGGCAGGTAGGAAGCAAAAGCC
ATTCCTTGCTCGGCGTGACTTTGATCTTTCGTCTGTCTGGTCTGTAGGGA
TCAAGAGAACCCTGGCCTGTGGGATGGATTAAGGATCGCTTTTACTTCGG
CGATCAGTCATAAGGCTGACCGGTACTACTGTTGTTTTGTATTTTTACGC
CCCTGCTTCGTCTGTGCTGGAGATTACTCGATTATAATAAAAAGCAGATT
TCGGGAGAGACTTTTTCGATTTTTTTGCGACTTCATCCCAAGTTGCAGTA
CAACTGCTGTGCAGTCACTATGGTATTTATTCCAAAGTCCGGCATTAAAT
ACGAGAATTGAATAGTGTAGGTTTAAGTGCTACCGCTGTTCTTACTCTCT
TCTGCGAGGGGATTTTGACGCGAAATGTCGAGGGCACGAAAAGTGGCCAT
CCGAATGTGGCGTTGCAGCCCGTCGGCATTATTGTAAACTCCGACAGAGC
AGCCAGCGACGGACATACGGCAGCGGGCAATGTGCCGGGTTTGCCGGAGA
AATTGATGATGGAGCGGGACAACTCAACTATCACAAACCAAGTTGAACAT
CCTTACAGTCAGAACAGACGGGCAGCAGTCAACGTCTCTGCCCCAAGTGG
ATCTTTTTTTGTCACATTACAGGCAACGAATGCTTGTACGTGCAGTGTTC
TTTGACAAGAGTCTCCCTTGAACCTTTAATCTTCAATAGCTAACCCTATC
AGCCCCGGACGCTGCATTTGTAGAAATAAAAAAAATAAAAAAATGAACCA
CAAATCCAGGAAAACAATAGCGCGGCTCCCTATCCTCGTGGTGACGTGAT
GAGTTGTCGCTTTGCCCAGTTTTTGAGCAGCCCTTATTTATATATGAGTA
TTTAATTGGAACTTCATTTTTTATTAGTAGTAAGGTGGTGTTGTTATTCT
GAAACTGTTTTCCAACTTTATTTGAGTAACTGACTAAACCAATCTCTTAT
GCTAGCTTCGCGAGCCACTGCAAGCGCAGTGACTCCGAGGATCAAGGACA
AGCACAAGCTGTACGGCTTAGCGTAGCCGTAATCATAATCCAACAGTAGC
TGGGAGAAATCAAATAGGGATCAAGATGGGAACCCGCGCTGCAGGGTTTC
TAAGATGTCAAAGCTCAAATGCCTCTGATTACATGTACACTATTTATAGT
CCACTGCATGCATACAGGATGGCTGAAGGTTTTCAGGGCTATTTTCCCAG
ACTCTGCAAAGCTTTTTCACGGCGTTCGCCTTAGCCGTTTGGCTCGTGAG
GGCGTGGGGTATGACGTCTTGTGACACGCGATAATTTCACAGCCCCGTGT
GACATGTGACAGGATGGGGAAGGGTGCATTTCGAAGGGGAGAGGGGAACC
GTTTTGTGACACTCGCAAATTTATTTTGCGGGCGTGGTATCATCTCGTCT
GCAACATGTGTTCCACGGAATGAATGGAATCATGTGACCTAAAATGACTT
GTATATTAAAACGAGCATAAATCATGTGACGCCTGGAGCAAAAGGGGTCG
GAGCTCATCGCTTTCATGTCAGCCATTGAACGTCGACGGCTGGTGTGCTC
TGCTCCGGCCGCAACGCCATGTATTTGGCGTGAAGATAGTACAGCTGACA
GAATGCATACAACACATTGGTTCCATCAAGCGGTGGTAGCCAACTGGACA
GCGCCAACAGCATGATACAGTCGCTGAGTTGCGCTTGGTCACGGAAGGAA
CAGACAGTCAGTAGGATGCCATGTAGTACCGTTGGTGTATTGACTGTCTG
TACTGCCGTATATCTGTAGCAGTCTGCGCGGACATACTGCGGTAACACGA
ACACAGAAGAGGGAAAGAGGCTGGAGGTACCAGCATCTCCTGAGAGTTCC
TTAGCGAGAGATAGCCACTGCGTATACGCTGCCCTTTAACGTGTGATGGT
ACCCACAGATACAGCGGCAGTAGGTAGCTTGCCACAGCCGTTGTCGGAAC
ACGATAACACGGATGATGGAGTAGTGTACAATTGGTAATTCGGTGCTGGG
CTTCCTGGAAAGAAAATATTATTTCCTCGCTTAACTTGGTCACCTGCTGC
CAGTAGGTAGCATATAAATTCTACCTATAAACGGTACGTGTGTCATGTTT
GATCGACAGAGCTGCACACGGAATAAGAGAAATACAGGACGTAAAAATCG
TGTATTCATGCCTGCGAATCGTGCCACGGTACGTTGCCACCGTGGTTGTC
GGGGGCGCACTTCCTATCTCCAAACATAACAGAAACCCCGAGAAACTTGG
GGGGGGGGGGGTTCCGCGGACCCACGGAATTTTCGGAGAAAAATCGAGGG
ATCGCTGAAGAAGCAGGCGAACGGGTCGTGATGTGCATTGGGATGGAAAA
AGGGTAGTCTGTGTCCCTCGCCCCTAAAACCTGGAAGCACCAAGTGCAAG
AACAGGAAGGAGTGTGCTGCTTTCCAATTCTTGGCCCACTGGTGCGACGA
AGGTTTCAGAGTTACAAAAGAAGTACTACCGCTGCACAGTCAGCACCGTC
GGGACCACTTGAAAAACGTGAAAGTGGTGGATTTATGTCCGTCTATACTG
ACTCTAAGCAGTGAACATGGGTAAAGCAAGGCTTCATTATTATAGGCTAA
ACCAGGGTACCTATTTTTTATCGGAGGGTCCATACTGTACTATACTGTGC
TTTATTTTGTAGTGGATGTTAACGCAATGGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTCAAGATGAAATTCGGCTATTACCGTGAAACCCCCGAGGTAT
CGCATCCTGTTGTGCAAACGATTTTCAAACGCGGTTATCTTAAGAACTAT
GGAGATGGCTGCTGACAACAAATCGAATAGCGTGCCGTTGGAAATATTTT
GCGGAGATATATCCTATCTGTCGATGGACGGGTTCTTGCGGCCGTGTGAT
GTCTCCGTTCTCGAGATACAAAGTCGCGTTTTTTTCAATATTTGCGCCCC
AGTAGTGCGATACCTCTGGGTTTATTTTACGGTATTGCATGTAGTATGAC
ATGTTGAATGCCCGAAGCTCTCGCGCGATCGTGTGCACCCCCATCCCCTC
GATTGAATCGTTTTTTTGTTTGTCTATGGAAAAAATAAAAGCGTATGGTC
AAGAGGTACCGGGTATATCGGAACAGTATTGTATACGTTATCTGTGTGTC
GCAGGCATACTTTCGTAAGTGTACACATGCAGGTAATCTTATTTTGAGAA
GTCCAGTAGCATTCTGATATATAACCTGGGGATATTGGCATTGTATATTC
GGCTTATAGGCTAATATATATTGTTGAACTACATGTGTCGGGGACTCAAC
TAAGGATATGCTGAAGCGTTTCAACGGTGTCATGGTTGGGATCTTCCAGT
GCAGGAGCGATCGCATATAACAGCATATTGGTGACATTGAGATTCAACTT
TGAGATGGAGATTCTGGGTTATATTGGAAATAGGCTGTACCCTGACGATC
AATATTCGGATATTCAGGATACAGCCTATTTCCAATATAACCCAGGATCT
CCATCTCAAAGTTGGATCTCAATCTCACCAATATACTGCTATATGATAAC
AAATGAAAAGAGGACCCGGTGTTTGTGCTTTTTGGGATAATGACATGAAT
GGATCAGAACCTCCTCCCTCTCTCGTGATTATTAGAGAGCCTAAATAGGC
CCGTTGGCCCTTTTTAGCGTCTTTCCAGCGATACTAATGAGCGCCGTTGC
TGTCAAGAAAATTGAGTTTGGAAAATAACGTCATGGAGTGCGACATTCTT
AAGAGTGTTTCCGTTTTACGTGGGAAATCGGGACTACAAGGGTTTTATAC
AAATAAAAAGCAATGTGTTTTTTGTTTTTTTCGATTGTCTCTTTGCCGAG
CAGACGCGCTGATGCAACATGTGGAGGACGCTTGCAGCGACATGCTCATG
TCTCCCAACTGGACGCTGAACATGCAGATAGTAGACGAGCTTAACCAGGA
GCAGGATCCCGTCGTGTGAGTTTCGAACAAGAAACAGGCAGTATCCCCAG
CAAGCACACTCTACATGGGCTTTCATCAAAAGCCCCTGACGAATTGCGAA
TGTAAATATTTCTTTCGAATGGTTTTAGAAGAACCTTGTTGTTTTTTTTC
AAGTATTTGTGCCAAAGTTTCAGCAGTAGTGCGCGGGCAAATCGAACAAA
CGTGCTTTTACTCGTTCGTGCTGAACGTCGAGTGCGAACAATTTTTTCTC
GATTTTCGATTTTCGACTTTCGATTTTCGACTATTCCAAGAACATAGATG
TTCGTGTTATTTCGGGAGAGGGTTGAAGGGAATGCATTGGCGCTTCAGCT
CCCCTTTTGTATGTGTCTGCCTTTTTAAAATTTCCAAATGGCTGTTTCGG
AATTAAAAAAAAAAAATCTGAAGAAAAAAAAAAATTGCAGTGTTTCAGTT
GCTCGCTTGCTATCCGCATAAAGAACAATGCTACTTCAGTCCCTGTCGGC
GCTGTCTAGGCTGGACTAGACCACACGTGTTTTAGTATTACTGTTTCATC
TTTTTAAAGAACCCCATTTCGACCTTCATCAGAATTCAGAAAAACGAACT
CTTTGCAACATTCTATTTTTTTTATATATATTAAAAATGAGCCGATCGGG
ATATATACATATATATCTATATATATATTTACACATGTTCCACCTTTTTC
TTCATTTTATTTATTATTTGGTGAATTTTTAACTCATGAAAAAATAAGGG
TAACTGTCCTCGACAGACATTGGTTAATTATGACTCCTTTAAGGTCGCCA
CCACATATACCCTCGCCTTTCTTTTTTTCTGGAGTATGACTTTTTGGAAA
ACTATAGTCTAGAAGCGACCGAAACCCGACCGGCCCGCGTCAAGGTGTTA
CAATCTCTTTTATTTGCAGGAGTCCTGACCTTGCTGCGTTGAGTTCCCCG
CCATTGTTGGGCATGTTTGTTGAGCGCTTCAATTTTTGGTCTATCGGTCC
TGGGGTTCGAATCCACGACCTTGAGAACATTTCACCGATGTAATCAATGT
GAAAAGTGAGAATTGCTGTTCTTGACAGACTTTGCGTGGTTATCGCCACT
TTTAAGGTGGCCATCACACGAATAATATTTTTAAAATAAAACGGGAAAAA
GACACCGCAAACGTCAAAGGATCTGACTCGCGGACCATGGCAACACACGC
AAGACAGAACACGTTTCCAGAATAACTGAGACCAGTATAGAACACGTGTG
CATAATGTTGTCATATCATGTGTCCAAAAACAACAAAATGACCTCTTTCA
AAAGGTTCGTCAGATCATCTGTCAAGGTGAAATAGCTTTTGAAGATATTT
GTGTTAGGTCATCTTCCAAAATGGACCAGCTTTTTAAAGACGTTTGTCAA
ATTACGTCTCTCCTATATGTATTTTAGAACACAGCCAATTCTTGGACGAT
GATTTCTAAAACAGTTTTGTTTTTCTAGCTTTGAGGTCATTTAAATCTGT
CACGGGTCACGCGTGCCTTACGTACCTTTAGTGTAATTTTACCCGTTGTC
GTTGCGAAGCGCTATGATAGTTGAGGCATTGTTATGCCGGTGTTAGTCAA
GTCATAATCCAGTGTTTTGTGCTCGACCGATGCAGAAAGGCTCACTGCTC
CGGCGATGAAGATTTGTTTTTCAAAAGTAACTCGAGTATAGACTCGGGAA
AATGTTCCAGAACCACGAGGACGAACCTCACCATGTTCAGTAGTAAGAAT
TAAGTAGGGTGAGGCGTTATTAGGCGTCATTTTTGTTTTATTCACTGCAT
TAAAGATGACCGTTTTTCCGTGCGGCAGAAGATAATACACCACCAGCACG
AAGAAGAGAAGATTAACACACAAAAGATGTCGGCACCTTGTTCAGACGTG
GTTATCGCCTCGAAGTCAATACTAGCCACTGGACAAGCTGGCAGATGGGT
GCTCGTGTGACTGCTATTTCAAACAATATAGATCTACTTTATCCTGTCTA
CAGGGTGAGTGAGGTTGTTCGAATATTGCGCAAGAAGCTGGGCTCTCACA
ACGTCCGAATGCTGTCAGTTGGACTTACGCTGGCCGAGACCTTGGTCAAG
AATTGTGGGCCGCGGGTGCACCACGAGGTGGCATCCGAACGCTTCATGAT
GGCGATGGCGAAAATAGCAAGGGTAAGTGGCACTGCAGTAACCGTCATTC
AAATGGAGGGATAGCATCATTTTGTTGTTGAGGGACGGGAGGGGGAGGGG
GAGAGGGGCGGGGGGGGGGGGGGGGGGGGTGAAAATATTGTATAGAGCTG
CGATGGAATCGAAAACGAGTCAAACATGTTTAGTTAAGTATCAAATTCAA
ATGATGTAATGTAGAAATTTGACAACGACGACCGTCAAACAAACAGGGGG
GTATAGTGTTCGGCATCTTTGAGTTTGTTGGATTAGTTGACGGTGGTTAT
TTTCTACAAACTGAAGCAACTAGAGAAGATCTTTGATTGCTGTCATACGT
TGATGTAAAAACTATTGATCCCCCCCCCCCGGACAAAGACGAATACTTGC
AAATGCTTTTCACGAAAAACCGAAAGTATTTGCCTGAGTTTCAGAATTAG
CTCGTGTGTACTATGTGCCCCGGACCATCCACGATTGCAAGGGTATGTTC
CGTAGGGTACCCACAAAAATACCGGGGGGTAGTTACCGTCTGTAAGTACC
CTACAGAGAACTTCTTTGAAGTCTGTAACATTTCCAATACCCTACAAATA
CCCTACACAACACACCCTTGCACGATTGCTAATCATACTCGTAAAGCGAA
TGGACAGGGGTGAGCGCTTTATTACATGTGTTCGTCATTCTGAAACTCAG
GCGAATACTTTTTTCTTTTTTTTTCTGAAAAGTATTTGCAAGTATTCGTA
TTTGTTCGGAGGCTGAAACTATTTCATGTTTACGCCCATCGTCGCCCACG
CCTCTTGCTGATCAGTAAGTGTGCGCGACTAACGTTTGAGGTCAGCTGCA
TAACCTCGACGTGGGTACAATAAGGTTATCATTTCGAGATTTACCAATTG
TGGCAAGTGGGTTGACGCGTGAATGGGCTGTTTATTTTTTTAATGAGCGC
TAGAGATCAGTTCTACTAACTGTGCTCTCCACTTCTTGCCACCCGCCCTC
CCGCTGCAGACACATTCTTTCAAGACCAGTCGGGATAGCATGACGCTCTC
CGATCAGTCATTAGACATCATCCAGGCCTGGGGAGAGGCTTTTCTGCCTC
GGAGGGTAAGTGAGCCATTGTTGAAGTTAAAACCATTCAGGTTTAGATTT
ACAGTGTACGGGCACCGCAAACCGATAGACATGTTTATCTCTTTCTCTCT
CTCTCTCTCTCTCTATATATATATATATATATATATATAGATAGATATAT
ATGCCGGACGTGTTTTCGTCGTTGTCCATATTTTTGAGACTTTGATTGTT
TTCCAGCAAGGATGGATAACTAAGGCTCTCCTATTTGTAGAATTTTTTGT
GTGCTGATTGGTGCCTTGCGTTACTGTATGCATGGTCTCGAGACCAATGT
ATTTTTCTCAGGTGGCGGACTTATTGTGACCACGGAAGCAGGAGCGCTAT
TCTGATTGAACTGTTGAAGCAGGAATAGTGAATAAAAAGATAATAAGGAG
GAAACAAGGCACAATGATCCTTCTCACAGAAGCGTCATCATTAATTAAGA
CTAGTAGACGGCCAAATCGCGGTGAATTCATACAGTCACATCATGGCTGC
CCTCTCTCTAATGTAGGTGGCACGTACAAACAAACTATACCTTTTATGTT
CCCTTGTACGTTCATTTTTCTTTTTTTCTTTTTTTCTCGGCGTTCAAAAA
AACAAAATGGAAAAAACCCCAAAAAATAGCGAGAATTTCCGCTTATCGTG
GACACATACCACGAGCTCCGAGCCGAAGGCCTCCCATTTTCGGAACAATA
TCAATCCGATCGACCGCCCGTGCTAGACCCTGGAGGGGGAAGCCTCCTTG
ACCGCCCAACGGCTTCCTCGAATCTACCTGGAAGCAAATCTGCCGGCGGA
TCTCACTCCAGATCTGGATCTTCAGCTGGGACGGTGGCAACCGTGGCCGC
AGTTGGGGGGGGCGGGGGGCGAACTGGGGGAGGGGACCGGGGGGGTGCTT
CGGCAGCGCCGGCGGCGACGTCGGCAGCGTTTAATCCTGCTGAGATGGAG
GAATTTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig7990:619..9477-

>mRNA_H-paniculata_contig7990.16008.1 ID=mRNA_H-paniculata_contig7990.16008.1|Name=mRNA_H-paniculata_contig7990.16008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig7990:619..9477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTCGCTCTTTCGCATACCGCCTCCGATGGACGACCAGACTCGGAC
CAGATGCGATGACTTCGCTCTTTCGCATACCGCCTCCGATGGACGACCAG
ACTCGGACCAGATGCGACGCGCTGATGCAACATGTGGAGGACGCTTGCAG
CGACATGCTCATGTCTCCCAACTGGACGCTGAACATGCAGATAGTAGACG
AGCTTAACCAGGAGCAGGATCCCGTCGTACGCGCTGATGCAACATGTGGA
GGACGCTTGCAGCGACATGCTCATGTCTCCCAACTGGACGCTGAACATGC
AGATAGTAGACGAGCTTAACCAGGAGCAGGATCCCGTCGTGGTGAGTGAG
GTTGTTCGAATATTGCGCAAGAAGCTGGGCTCTCACAACGTCCGAATGCT
GTCAGTTGGACTTACGCTGGCCGAGACCTTGGTCAAGAATTGTGGGCCGC
GGGTGCACCACGAGGTGGCATCCGAACGCTTCATGATGGCGATGGCGAAA
ATAGCAAGGGGTGAGTGAGGTTGTTCGAATATTGCGCAAGAAGCTGGGCT
CTCACAACGTCCGAATGCTGTCAGTTGGACTTACGCTGGCCGAGACCTTG
GTCAAGAATTGTGGGCCGCGGGTGCACCACGAGGTGGCATCCGAACGCTT
CATGATGGCGATGGCGAAAATAGCAAGGACACATTCTTTCAAGACCAGTC
GGGATAGCATGACGCTCTCCGATCAGTCATTAGACATCATCCAGGCCTGG
GGAGAGGCTTTTCTGCCTCGGAGGACACATTCTTTCAAGACCAGTCGGGA
TAGCATGACGCTCTCCGATCAGTCATTAGACATCATCCAGGCCTGGGGAG
AGGCTTTTCTGCCTCGGAGGCGAGAATTTCCGCTTATCGTGGACACATAC
CACGAGCTCCGAGCCGAAGGCCTCCCATTTTCGGAACAATATCAATCCGA
TCGACCGCCCGTGCTAGACCCTGGAGGGGGAAGCCTCCTTGACCGCCCAA
CGGCTTCCTCGAATCTACCTGGAAGCAAATCTGCCGGCGGATCTCACTCC
AGATCTGGATCTTCAGCTGGGACGGTGGCAACCGTGGCCGCAGTTGGGGG
GGGCGGGGGGCGAACTGGGGGAGGGGACCGGGGGGGTGCTTCGGCAGCGC
CGGCGGCGACGTCGGCAGCGTTTAATCCTGCTGAGATGGAGGAATTTTCA
CGAGAATTTCCGCTTATCGTGGACACATACCACGAGCTCCGAGCCGAAGG
CCTCCCATTTTCGGAACAATATCAATCCGATCGACCGCCCGTGCTAGACC
CTGGAGGGGGAAGCCTCCTTGACCGCCCAACGGCTTCCTCGAATCTACCT
GGAAGCAAATCTGCCGGCGGATCTCACTCCAGATCTGGATCTTCAGCTGG
GACGGTGGCAACCGTGGCCGCAGTTGGGGGGGGCGGGGGGCGAACTGGGG
GAGGGGACCGGGGGGGTGCTTCGGCAGCGCCGGCGGCGACGTCGGCAGCG
TTTAATCCTGCTGAGATGGAGGAATTTTCA
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