mRNA_H-paniculata_contig799.16007.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig799.16007.1
Unique NamemRNA_H-paniculata_contig799.16007.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 7.850e-33
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:  118 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 240
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.040e-32
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:  172 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 294
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.350e-32
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:   95 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 217
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.430e-32
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:  261 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 383
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.340e-31
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG+    SE RK  HYAR GHVSFDER FK
Sbjct:  648 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGVLLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFK 770
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.910e-31
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:  974 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 1096
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.870e-31
Identity = 63/123 (51.22%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  +G+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:  487 HARTCRRDGAQVNMHEPLKYALSRALNGLCVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNEGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 609
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.420e-31
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR C R GAQ++ H+ L +A++R L  L ++  VE G PFT +R+  MD V+    L +AS   Y  KG L+DV HADP +  HL+ GSAT DG+    SE RK  HYAR GHVSFDER FK
Sbjct:  493 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGTLLDVTHADPHAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFK 615
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.940e-30
Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:    7 HARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            HAR   R GAQ++ H+ L +A++R    L ++  VE G PFT +R+  MD V+    L +AS   Y  KG+L+DV HADPQ+  HL+ GSAT DG     SE RK  HYAR GHVSFDER FK
Sbjct:  104 HARTFPRDGAQVNMHKPLKYALSRACNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFK 226
[Close]
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.530e-27
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:   37 QIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYRMDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVVATSETRKSVHYARRGHVSFDERCFK 375
            +++ H+ L +A+++ L  + ++  VE G PFT  R+  MD V+    LR+A+ + Y  KG+L+DV HADPQ+  HL+ GSAT DG+    SE RK  HYAR GHVSFDER FK
Sbjct: 1972 EVNMHEPLKYAISKALNGIAVKHDVESGAPFTGARNLSMDIVIRPGALRNAASSVYRNKGILLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFK 2084
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig799.16007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K198_9PHAE7.850e-3352.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE1.040e-3252.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE1.350e-3252.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LLI3_9PHAE3.430e-3252.03Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC7_9PHAE1.340e-3152.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K195_9PHAE1.910e-3152.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ9_9PHAE5.870e-3151.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE9.420e-3151.22Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUN7_9PHAE3.940e-3050.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE7.530e-2747.79Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig799contigH-paniculata_contig799:3441..3815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.82431-CDS-H-paniculata_contig799:3440..38151622930996.82431-CDS-H-paniculata_contig799:3440..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig799 3441..3815 +
1691481543.5310645-CDS-H-paniculata_contig799:3440..38151691481543.5310645-CDS-H-paniculata_contig799:3440..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig799 3441..3815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig799.16007.1prot_H-paniculata_contig799.16007.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig799 3441..3815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig799.16007.1

>prot_H-paniculata_contig799.16007.1 ID=prot_H-paniculata_contig799.16007.1|Name=mRNA_H-paniculata_contig799.16007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MRHARICHRAGAQIDQHQTLVHAVTRLLKRLGIRSTVEDGDPFTADRHYR
MDSVVPAEELRDASINAYCVKGLLIDVMHADPQSAGHLKRGSATIDGSVV
ATSETRKSVHYARRGHVSFDERCFK
back to top

mRNA from alignment at H-paniculata_contig799:3441..3815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig799.16007.1 ID=mRNA_H-paniculata_contig799.16007.1|Name=mRNA_H-paniculata_contig799.16007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig799:3441..3815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCACGCCCGCATCTGCCATCGAGCGGGGGCGCAGATAGACCAACA
CCAGACGCTCGTACATGCGGTTACGCGACTCCTTAAGCGACTGGGCATCA
GGAGCACCGTGGAGGACGGAGACCCGTTTACGGCGGACCGGCACTACCGG
ATGGACAGTGTCGTCCCGGCAGAAGAGCTCCGAGATGCTTCCATCAACGC
CTACTGCGTCAAGGGTCTCCTGATCGACGTTATGCACGCAGATCCACAGT
CGGCAGGGCACCTCAAACGCGGGAGCGCTACCATCGACGGCTCGGTCGTC
GCCACTTCTGAGACACGCAAAAGCGTACACTATGCTCGAAGAGGACACGT
GTCCTTTGACGAGCGTTGTTTCAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig799:3441..3815+

>mRNA_H-paniculata_contig799.16007.1 ID=mRNA_H-paniculata_contig799.16007.1|Name=mRNA_H-paniculata_contig799.16007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig799:3441..3815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCACGCCCGCATCTGCCATCGAGCGGGGGCGCAGATAGACCAACA
CCAGACGCTCGTACATGCGGTTACGCGACTCCTTAAGCGACTGGGCATCA
GGAGCACCGTGGAGGACGGAGACCCGTTTACGGCGGACCGGCACTACCGG
ATGGACAGTGTCGTCCCGGCAGAAGAGCTCCGAGATGCTTCCATCAACGC
CTACTGCGTCAAGGGTCTCCTGATCGACGTTATGCACGCAGATCCACAGT
CGGCAGGGCACCTCAAACGCGGGAGCGCTACCATCGACGGCTCGGTCGTC
GCCACTTCTGAGACACGCAAAAGCGTACACTATGCTCGAAGAGGACACGT
GTCCTTTGACGAGCGTTGTTTCAAAATGCGCCACGCCCGCATCTGCCATC
GAGCGGGGGCGCAGATAGACCAACACCAGACGCTCGTACATGCGGTTACG
CGACTCCTTAAGCGACTGGGCATCAGGAGCACCGTGGAGGACGGAGACCC
GTTTACGGCGGACCGGCACTACCGGATGGACAGTGTCGTCCCGGCAGAAG
AGCTCCGAGATGCTTCCATCAACGCCTACTGCGTCAAGGGTCTCCTGATC
GACGTTATGCACGCAGATCCACAGTCGGCAGGGCACCTCAAACGCGGGAG
CGCTACCATCGACGGCTCGGTCGTCGCCACTTCTGAGACACGCAAAAGCG
TACACTATGCTCGAAGAGGACACGTGTCCTTTGACGAGCGTTGTTTCAAA
back to top