mRNA_H-paniculata_contig799.16006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig799.16006.1
Unique NamemRNA_H-paniculata_contig799.16006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig799.16006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig799contigH-paniculata_contig799:2385..2945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size563
Cds size516
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.7300682-UTR-H-paniculata_contig799:2384..24291622930996.7300682-UTR-H-paniculata_contig799:2384..2429Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig799 2385..2429 +
1691481543.5118973-UTR-H-paniculata_contig799:2384..24291691481543.5118973-UTR-H-paniculata_contig799:2384..2429Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig799 2385..2429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.7514825-CDS-H-paniculata_contig799:2429..29451622930996.7514825-CDS-H-paniculata_contig799:2429..2945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig799 2430..2945 +
1691481543.5217352-CDS-H-paniculata_contig799:2429..29451691481543.5217352-CDS-H-paniculata_contig799:2429..2945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig799 2430..2945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig799.16006.1prot_H-paniculata_contig799.16006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig799 2430..2945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig799.16006.1

>prot_H-paniculata_contig799.16006.1 ID=prot_H-paniculata_contig799.16006.1|Name=mRNA_H-paniculata_contig799.16006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
MLGYRMWAFLDHIWQLNIVMFLLVWFGSVYILAQPDCRLRSPCPAGGSAL
KTCFLERVMDAELSDQACTLTDNSGLWILENIPENPQLAEEHAFFDAGCP
ANHLNLLPHQQLQAAMSTDSGGSGLALARSRRWSATVRSMCGMWSQIIVD
SPGPLGERMRAHIPGTPMVRSL
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mRNA from alignment at H-paniculata_contig799:2385..2945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig799.16006.1 ID=mRNA_H-paniculata_contig799.16006.1|Name=mRNA_H-paniculata_contig799.16006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig799:2385..2945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCTGGGATGAAGGACTGGGTGAGAGATCGACTGTTATGACGCCATGCT
AGGATATCGAATGTGGGCGTTTTTGGATCATATTTGGCAGTTAAATATAG
TTATGTTCCTGTTGGTCTGGTTCGGGTCTGTCTATATTTTGGCGCAGCCG
GATTGCCGCCTACGGAGCCCGTGTCCGGCTGGAGGGTCAGCCCTGAAGAC
CTGCTTCCTGGAGAGGGTGATGGATGCCGAACTCTCCGACCAAGCCTGCA
CACTAACCGACAATAGCGGACTATGGATATTGGAGAACATCCCGGAAAAC
CCGCAACTAGCAGAAGAACACGCCTTCTTCGACGCTGGTTGCCCGGCGAA
CCACCTTAACCTCTTGCCCCACCAGCAACTTCAGGCCGCCATGTCGACCG
ATTCAGGGGGGTCGGGGCTCGCCTTGGCACGGAGCAGGCGCTGGTCAGCA
ACGGTGAGGAGTATGTGCGGCATGTGGTCGCAGATAATCGTGGACTCGCC
GGGACCGTTGGGGGAGCGGATGCGGGCACATATTCCCGGGACACCGATGG
TGCGCTCATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig799:2385..2945+

>mRNA_H-paniculata_contig799.16006.1 ID=mRNA_H-paniculata_contig799.16006.1|Name=mRNA_H-paniculata_contig799.16006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig799:2385..2945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGGATATCGAATGTGGGCGTTTTTGGATCATATTTGGCAGTTAAA
TATAGTTATGTTCCTGTTGGTCTGGTTCGGGTCTGTCTATATTTTGGCGC
AGCCGGATTGCCGCCTACGGAGCCCGTGTCCGGCTGGAGGGTCAGCCCTG
AAGACCTGCTTCCTGGAGAGGGTGATGGATGCCGAACTCTCCGACCAAGC
CTGCACACTAACCGACAATAGCGGACTATGGATATTGGAGAACATCCCGG
AAAACCCGCAACTAGCAGAAGAACACGCCTTCTTCGACGCTGGTTGCCCG
GCGAACCACCTTAACCTCTTGCCCCACCAGCAACTTCAGGCCGCCATGTC
GACCGATTCAGGGGGGTCGGGGCTCGCCTTGGCACGGAGCAGGCGCTGGT
CAGCAACGGTGAGGAGTATGTGCGGCATGTGGTCGCAGATAATCGTGGAC
TCGCCGGGACCGTTGGGGGAGCGGATGCGGGCACATATTCCCGGGACACC
GATGGTGCGCTCATTGATGCTAGGATATCGAATGTGGGCGTTTTTGGATC
ATATTTGGCAGTTAAATATAGTTATGTTCCTGTTGGTCTGGTTCGGGTCT
GTCTATATTTTGGCGCAGCCGGATTGCCGCCTACGGAGCCCGTGTCCGGC
TGGAGGGTCAGCCCTGAAGACCTGCTTCCTGGAGAGGGTGATGGATGCCG
AACTCTCCGACCAAGCCTGCACACTAACCGACAATAGCGGACTATGGATA
TTGGAGAACATCCCGGAAAACCCGCAACTAGCAGAAGAACACGCCTTCTT
CGACGCTGGTTGCCCGGCGAACCACCTTAACCTCTTGCCCCACCAGCAAC
TTCAGGCCGCCATGTCGACCGATTCAGGGGGGTCGGGGCTCGCCTTGGCA
CGGAGCAGGCGCTGGTCAGCAACGGTGAGGAGTATGTGCGGCATGTGGTC
GCAGATAATCGTGGACTCGCCGGGACCGTTGGGGGAGCGGATGCGGGCAC
ATATTCCCGGGACACCGATGGTGCGCTCATTG
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