mRNA_H-paniculata_contig7969.15993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7969.15993.1
Unique NamemRNA_H-paniculata_contig7969.15993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5J755_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J755_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 3.220e-79
Identity = 163/364 (44.78%), Postives = 210/364 (57.69%), Query Frame = 2 
Query: 2918 SGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL-------------THNIK*MEIVV*KGTSWNTCS*WWTGNVGRASW*ERAIAS*GRNIGQLMP*SMTS*TKAHFSRLGTGCGCTMYKIL*LPLERVSLLVSAGRGRQLKLNSQITG-WTNPFKILGVGPCKIGEQVVGSK*LLLDRPYNERTAS-RVSVRRCRRCFRPQEKGNRPEF 3964
            + + +RR PRWPLISLPL S PGEMV+FD+LGP P T   N Y+LLVVDL SRHAEP ALS  EK A+GCAS LA++Y TRW CP  LLSDR  EFT  V  +VY +LG KK  TS FH Q+NGCVERLNHTVCQML HVI +QQ +W + LL  VY HNNH+S+ TGLAP E HI RYPR+PMT+L               +++ ++++  +              V R    +    +   ++  L+       TK      G    C  Y     P   +    +       ++ +++   WT PFK+L VGPC+  +  VGSK L LD P++ +  S RVSV RC+RC R  E    P+F
Sbjct:  130 ASKTARRRPRWPLISLPLPSRPGEMVAFDILGPLPTTKSGNKYVLLVVDLFSRHAEPYALSADEKTAQGCASKLADDYCTRWGCPVYLLSDRGGEFTAAVARDVYRLLGAKKRFTSSFHPQSNGCVERLNHTVCQMLSHVISAQQTDWDDHLLPCVYAHNNHVSKATGLAPMEVHIGRYPRLPMTVLGSQKVVSGMQSKKRDDLEYLQLMKDRQAKAYELV------VERDRLTKEKHRARNEDLDNLI-------TKRPIFHAGAWVWC--YD----PQHTLRTANNDQTASAKRIKAKLANLWTGPFKVLAVGPCRFNDMEVGSKLLYLDLPHDTQAKSNRVSVLRCKRCHRADEPEEIPDF 474
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5KEM9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM9_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 5.550e-71
Identity = 119/187 (63.64%), Postives = 138/187 (73.80%), Query Frame = 2 
Query: 2918 SGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL 3478
            + + +RR PRWPL SLPL S PGEMV+FD+LGP P T R N Y+LLVVDL SRHA P ALS  EK A+GCAS LA+++ TRW CP  LLSDR  E T  V  +VY + G KK  T+ FH QTNGCVERLNHTVCQML HVI +QQ +W + LL  VY HNNH+S+ TGLAP E HI RYPR PMT+L
Sbjct:   17 ASKTARRKPRWPLFSLPLPSRPGEMVAFDILGPLPTTKRGNKYVLLVVDLFSRHAIPYALSADEKTAQGCASKLADDHCTRWGCPVYLLSDRGGEITAAVARDVYRLPGAKKRFTNSFHPQTNGCVERLNHTVCQMLSHVISAQQTDWDDHLLPCVYAHNNHVSKATGLAPMEVHIGRYPRFPMTVL 203
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5K3K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K5_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.890e-67
Identity = 124/191 (64.92%), Postives = 147/191 (76.96%), Query Frame = 2 
Query: 2906 FRLSSGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL 3478
             +  + + SRR  RWPL+SLPL S PGEMV+FD+LGP PKT R N YILLVVDL SRH EP AL++ EK ++GC + LA++YV RW CP+ LLSDR AEFT +V ++VY MLG KK  TS FH  TNGCVERLNHTVCQML HV+ SQQ +W E LLQV Y HNNH+S+ TGLA +E HI RYPR+PMTIL
Sbjct: 1021 IQCQASKTSRRAHRWPLVSLPLPSRPGEMVAFDILGPLPKTKRGNVYILLVVDLFSRHVEPYALTSEEKRSQGCVTKLADDYVVRWGCPKYLLSDRGAEFTARVAKDVYRMLGAKKRYTSSFHPHTNGCVERLNHTVCQMLYHVVSSQQTDWDEYLLQVCYCHNNHVSKATGLAASEIHIGRYPRLPMTIL 1211
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5KJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH5_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 5.670e-67
Identity = 124/187 (66.31%), Postives = 145/187 (77.54%), Query Frame = 2 
Query: 2918 SGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL 3478
            + + SRR  RWPL+SLPL S PGEMV+FD+LGP PKT R N YILLVVDL SRH EP AL++ EK A+GCA+ LA++ V RW CP+ LLSDR AEFT +V ++VY MLG KK  TS  H  TNGCVERLNHTVCQML HV+ SQQ +W E LLQV Y HNNH+S+ TGLA +E HI RYPR+PMTIL
Sbjct:  716 ASKTSRRAHRWPLVSLPLPSRPGEMVAFDILGPLPKTKRGNMYILLVVDLFSRHVEPYALTSEEKTAQGCATKLADDCVVRWGCPKYLLSDRGAEFTARVAKDVYRMLGAKKRFTSSSHPHTNGCVERLNHTVCQMLSHVVCSQQTDWDEYLLQVCYCHNNHVSKATGLAASEIHIGRYPRLPMTIL 902
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 7.480e-60
Identity = 154/373 (41.29%), Postives = 200/373 (53.62%), Query Frame = 2 
Query: 2933 RRVPR----WPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTILTHNIK*MEIVV*KGTSWNTCS*WWTG---------NVGRASW*ERAIAS*GRNIGQLMP*SMTS*TKAHFSRLGT------GCGCTMY---KIL*LPLERV--SLLVSAGRGRQLKLNSQIT-GWTNPFKILGVGPCKIGE-QVVGSK*LLLDRPYNERTAS---RVSVRRCRRCFRPQEKGNRPEF 3964
            R+VPR    WPL+SLPL S PG+MVSFD LGP PKT +DN Y+ LVVDL SRHAE   L+  +K AKG  S++ N+Y+ RW CP  +LSDR AEF  +V + VY MLG  K  TS +H QTNG VERLNHT+CQML H++   Q NW E+L   V  HNN++S+ TGLAPN  HI RYPR+PMTIL            +G S N       G         N+ R    +R      R   ++         +   S +G       G    +Y     +    E V  S + S G+ +   L  ++   WT P+K+L VGP    E + VG   L LD   +E   +   RVSV RC++C+   E  +RP F
Sbjct:  539 RKVPRHTKCWPLVSLPLPSRPGQMVSFDYLGPLPKTTKDNEYVFLVVDLFSRHAEGYPLTKAQKNAKGFVSIMVNDYIARWGCPHTMLSDRGAEFANEVAKGVYKMLGTVKKFTSSYHPQTNGMVERLNHTLCQMLSHLVADDQANWDEMLPHAVAAHNNNVSRGTGLAPNVVHIGRYPRLPMTILEG----------RGVSGNQ------GLKQDQLDYLNLMRDK--QRKAYELVREQDKITKSKHEKSNQVLNSIIGKRPKYKEGDWVLVYDEKSTISGGGEHVLKSRMNSRGKEKSFALIPKLAHNWTGPYKVLFVGPGTDPEGEKVGPNILYLDVNKDEPGTNINERVSVYRCKKCYTQHENEDRPRF 893
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5JW90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW90_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.170e-59
Identity = 104/182 (57.14%), Postives = 126/182 (69.23%), Query Frame = 2 
Query: 2933 RRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL 3478
            R    WPL+SLPL S PG+MVSFD LGP PKT +DN Y+  VVDL SRHAE   L+  +K AKG  S++ N+Y  RW CP  +LSDR AEF  +V + V+ +LG  K  TS +H QTNG VERLNHT+CQML H+I   Q NW E+L      HNN++S+ TGLAPN  HI RYPR+PMTIL
Sbjct:   56 RHTKCWPLVSLPLPSRPGQMVSFDYLGPLPKTTKDNEYVFPVVDLFSRHAEGYPLTKAQKNAKGIVSIMVNDYSARWGCPHTMLSDRGAEFANEVAKGVFKLLGTVKKFTSSYHPQTNGMVERLNHTLCQMLSHLIADDQANWDEMLPHAAAAHNNNVSRRTGLAPNVVHIGRYPRLPMTIL 237
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5JKZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 3.810e-59
Identity = 139/380 (36.58%), Postives = 197/380 (51.84%), Query Frame = 2 
Query: 2906 FRLSSGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTILT------------HNIK*MEIVV*KGTSWNTCS*WWTGNVGRASW*ERAIAS*GRNIGQLMP*SMTS*TKAHFSRLGTGCGCTMY----------KIL*LPLERVSLLVSAGRGRQLKLNSQITG-WTNPFKILGVGPCKIGE-QVVGSK*LLLDRPYNER---TASRVSVRRCRRCFRPQEKGNRPEF 3964
            +   + +  R   RWPL+SL L S PGEMV+FD LGP P+T +   Y+ LVVDL SR+AE  AL+  EK A+GC+++L   Y+ RW CP   LSDR AEFT  V  E+Y M G  K  TS +H QTNG VERLNHT+CQML H+I   Q NW E L   +  HNN++S+ TGL+PNE HI RY R+PMTIL               +  +E++  +             N+ +    +R I +      + +   +    K    ++       +Y          K +  P       + +G  +   L S++   WT P+++L VGP    + + VG K +LLD   +E      SRVSV R ++CF P  + ++P F
Sbjct:   75 YACQARKTPRHTRRWPLVSLSLPSRPGEMVAFDFLGPLPQTKKGRQYVFLVVDLFSRYAEAYALTAAEKTAQGCSAILVQQYIPRWGCPHTFLSDRGAEFTAPVSREIYRMQGTVKMFTSSYHPQTNGMVERLNHTLCQMLSHLIADDQKNWDEYLSTAIAAHNNNMSRGTGLSPNEIHIGRYTRLPMTILEGRGVKGHQSFKQDQLDYLELMRARQVK--------AYNLVKEE--DRLIKAKHAKANEALVKEL----KTRRPKIEANDWVWLYNDQSTITGGGKHVLKPQT-----IKSGERKSFALVSKLAYCWTGPYRVLFVGPGTAPDGREVGPKLVLLDVRKDEPGKDITSRVSVLRVKKCFNPHSEDDKPRF 435
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5KPU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPU9_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 7.430e-58
Identity = 114/187 (60.96%), Postives = 133/187 (71.12%), Query Frame = 2 
Query: 2918 SGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL 3478
            + + +RR PRWPLISLPL S PGEMV+FD+LGP P T R N Y+LLVVDL SRHAEP ALS  EK  +GCAS LA++Y TRW+    LLSDR  EFT  V  +VY +L   K  TS FH QTNGCVERLNHTVCQML  VI + Q +W +  L  VY HNNH+S+ T L P E HI RY R+PMT+L
Sbjct:  762 ASKTARRKPRWPLISLPLPSRPGEMVAFDILGPLPTTKRGNKYVLLVVDLFSRHAEPYALSADEKRDQGCASKLADDYCTRWERTVYLLSDRGGEFTAAVARDVYRLLAANKRFTSSFHPQTNGCVERLNHTVCQMLSDVIIAPQTDWDDHPLPCVYAHNNHVSKATDLVPMEVHIGRYLRLPMTVL 948
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5KNM9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM9_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.330e-53
Identity = 139/351 (39.60%), Postives = 183/351 (52.14%), Query Frame = 2 
Query: 2990 MVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHM-LGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTILTHNIK*MEIVV*KGTSWNTCS*WWTG---------NVGRASW*ERAIAS*GRNIGQLMP*SMTS*TKAHFSRLGT------GCGCTMY---KIL*LPLERV--SLLVSAGRGRQLKLNSQIT-GWTNPFKILGVGPCKIGE-QVVGSK*LLLDRPYNERTAS---RVSVRRCRRCFRPQEKGNRPEF 3964
            MVSFD LGP PKT +DN Y+ LVVDL SRHAE   L+  +K AKG  S++ N+Y+ RW CP  +LSDR A+F  +V + VY M LG  K  TS +H QTNG VERLNHT+CQML H++   Q NW E+L   V  HNN++S+ TGLAPN  HI RYPR+PMTIL            +G S N       G         N+ R    +R      R   ++         +   S +G       G    +Y     +    E V  S + S G+ +   L  ++   WT P+K+L VGP    E + VG   L LD   +E   +   RVSV RC++C+   E  +RP F
Sbjct:    1 MVSFDYLGPLPKTTKDNEYVFLVVDLFSRHAEGYPLTKAQKNAKGFVSIMVNDYIARWGCPHTMLSDRGADFANEVAKGVYKMMLGTVKKFTSSYHPQTNGMVERLNHTLCQMLSHLVADDQANWDEMLPHAVAAHNNNVSRGTGLAPNVVHIGRYPRLPMTILEG----------RGVSGNQ------GLKQDQLDYLNLMRDK--QRKAYELVREQDKITKSKHEKSNQVLNSIIGKRPKYKEGDWVLVYDEKSTISGGGEHVLKSRMNSRGKEKSFALIPKLAHNWTGPYKVLFVGPGTDPEGEKVGPNILYLDVNKDEPGTNINERVSVYRCKKCYTQHENEDRPRF 333
[Close]
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Match: A0A6H5K9D1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D1_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.000e-52
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 2 
Query: 2990 MVSFDLLGPFPKTARDNSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLSDREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHVIGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTIL 3478
            MVSFD LGP PKT +DN Y+ LVVDL SRHAE   L+  +K AKG  S++ N+Y+ RW CP  +LSDR AEF  +V + VY MLG  K  TS +H QTNG  ERLNHT+CQML H+I   Q N  E+L   V  HNN++SQ TGLAPN  HI RYP++PMTIL
Sbjct:    1 MVSFDYLGPLPKTTKDNEYVFLVVDLFSRHAEGYPLTKAQKNAKGFVSIMVNDYIARWGCPHTMLSDRGAEFANEVTKGVYKMLGTVKKFTSSYHPQTNGMAERLNHTLCQMLSHLIADDQANGDEMLPHAVAAHNNNVSQGTGLAPNVVHIGRYPKLPMTIL 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7969.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J755_9PHAE3.220e-7944.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEM9_9PHAE5.550e-7163.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3K5_9PHAE1.890e-6764.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH5_9PHAE5.670e-6766.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWR4_9PHAE7.480e-6041.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JW90_9PHAE2.170e-5957.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKZ8_9PHAE3.810e-5936.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPU9_9PHAE7.430e-5860.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNM9_9PHAE1.330e-5339.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9D1_9PHAE1.000e-5258.28Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7969contigH-paniculata_contig7969:138..6734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score111.3
Seed ortholog evalue5.3e-22
Seed eggNOG ortholog400682.PAC_15700437
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs3A25R@33154,3BQ0A@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons3
Model size4066
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7969.15993.1prot_H-paniculata_contig7969.15993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7969 708..1316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.3201337-UTR-H-paniculata_contig7969:137..7071622930994.3201337-UTR-H-paniculata_contig7969:137..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 138..707 -
1691481542.3537228-UTR-H-paniculata_contig7969:137..7071691481542.3537228-UTR-H-paniculata_contig7969:137..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 138..707 -
1622930994.3523388-UTR-H-paniculata_contig7969:1316..18621622930994.3523388-UTR-H-paniculata_contig7969:1316..1862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 1317..1862 -
1691481542.3783338-UTR-H-paniculata_contig7969:1316..18621691481542.3783338-UTR-H-paniculata_contig7969:1316..1862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 1317..1862 -
1622930994.3721151-UTR-H-paniculata_contig7969:4087..44561622930994.3721151-UTR-H-paniculata_contig7969:4087..4456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 4088..4456 -
1691481542.3877661-UTR-H-paniculata_contig7969:4087..44561691481542.3877661-UTR-H-paniculata_contig7969:4087..4456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 4088..4456 -
1622930994.3874276-UTR-H-paniculata_contig7969:4762..67341622930994.3874276-UTR-H-paniculata_contig7969:4762..6734Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 4763..6734 -
1691481542.3977668-UTR-H-paniculata_contig7969:4762..67341691481542.3977668-UTR-H-paniculata_contig7969:4762..6734Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7969 4763..6734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.33817-CDS-H-paniculata_contig7969:707..13161622930994.33817-CDS-H-paniculata_contig7969:707..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7969 708..1316 -
1691481542.3697333-CDS-H-paniculata_contig7969:707..13161691481542.3697333-CDS-H-paniculata_contig7969:707..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7969 708..1316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7969.15993.1

>prot_H-paniculata_contig7969.15993.1 ID=prot_H-paniculata_contig7969.15993.1|Name=mRNA_H-paniculata_contig7969.15993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MVAAKLFRLSSGEASRRVPRWPLISLPLSSGPGEMVSFDLLGPFPKTARD
NSYILLVVDLSSRHAEPNALSNGEKAAKGCASLLANNYVTRWDCPQILLS
DREAEFTPKVVEEVYHMLGLKKCLTSYFHSQTNGCVERLNHTVCQMLLHV
IGSQQDNWGELLLQVVYTHNNHISQPTGLAPNEAHIDRYPRMPMTILTHN
IK*
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mRNA from alignment at H-paniculata_contig7969:138..6734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7969.15993.1 ID=mRNA_H-paniculata_contig7969.15993.1|Name=mRNA_H-paniculata_contig7969.15993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6597bp|location=Sequence derived from alignment at H-paniculata_contig7969:138..6734- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGAGTTGGCAGCAGCAAGCCGCAAGCGTGCTGCCCTTGATGTGTGAG
ACTTGCATCAACTCAGCGCTGAAATTGACAGCCAGCAAATACAAGAGACA
AGACCATTGCCAAGGACTACATCTACCACCCAGAAGTATCGTACTGAGAG
TAATTTATGTCATAGTCAATAACAGGACACAACAGCCTAAAAATATACAT
GTTTGAGATAGTCCCAAACATTACTGCAGCTACCATCACACTGACGTCGC
AAACGGCAACCTGTTACAGACAATGTCATACAACGCTCCTTCGGTCGGGG
TGCAGAGTCGAGCGGCAGCCGCTCACGTGGCGGCCGGAGACCGGAAGCAA
CAGTCCCCACAACAGAGGCTGTCTTCCCCAAGACGCCTTCCCGAGACGCA
GTCTCCGGAGTACCTGCATCACTCCCAGGCAGCCCTCATCAACAACCAGC
CCATCTCTTGATCACTTAGATCCCCCGGAGAAAATAGCGATTCTCCATCC
TCGTCAATGGGCACCCACACCGTGAAACCTCACACCCTACGCAAATGCTG
GCCCCCAGCCCGCCTCCCGCCGGAATATTTCAACAAACCATCAACTCAAC
CCTTTTGCCCGCACCTCAACCACCGCGAACGGCGGCTTCTACTTTCCTAC
CAGTCATCAACGACCGACCTTCCTCATAATATTCGCCCTCCGCAGCCCGC
GAACGACCATCTCCACAGTCGGCCACGGCCAATATATCAAGAGTGGCCGC
CCTCGACAAGAATCAATTCCAGGACGTGCAGAAATGGTTGCGCGAGCACG
AAGCGACTGTAACGGCGGCAGCCCAGGCAGCTACCCAAGCCGGTGCACAA
GCTGCGGCAGCGCAACAAGCTTCGTAAAACGGAGGAGAAGCTGGCGGCGC
CACTACAACAGCAGAAGCGGGCGGTATGCAAGCGTTGTGCCAGCAAGGGG
GAACGCACATCCAACAAACAGCCCGGCGTGTAACAACCCATAGCACGCAA
CACCGCTCGAATGCAGCAACTGCGAAGTCAGCAATAGGCGTTCGCGGCTC
AGGTACGCGACTTGGAAAACAGGATCCAGCGCCAGGAGAAGCGCATCCTT
CAACTACAACAACGCCCACACCTCATAACGTCGACTTCGAACAACGGATG
CGGAGTGAATAGACGCGGCGTAGTTGCAGCGGAAGGGGTTGTGGAGCCGG
ACCGGCCGGAGTTGGTGGAGCCGGAGCGGGGAGGAATGCTGGAGCCGGAC
CGGCCGGGAATGTTGGAGCTGGACCGGGCGGGTATGCTGGAGCCGGATCG
GGGGGGGGTTAGCGGAGCTGGTTTGGAGGTAGACATCGGAGCCGGCCGGG
GAGGGCACGGCGTTAAACATCACAGGGGGTACCAGCAATATCGAACAACC
AACTAACCGCCGCCGCCAACCTACCCGCCGCCGCAACCTCCTTTTCACCG
TCCCATGCGTGCGGAGTACGCAGCAATCGAACCTCACCGCCTGCCGCATT
TGTCATCGTTACCGCTGGCGGATCCGACGAAGCTGCAAATCAATCAAGTT
GCAAGTCGTGGTTGCGATCAAGGACGGGTCGCCCGATGCCACCAAATTTT
ACACCGCGGTTGATTGTATAGTCAATGAGGCACGTCGGAAGCGGGTAGCT
GGAAGGGAAGGTTTCCCTGGACGTTTTCCGACAGTTGATGGCCGACATGG
CGAAGGAGCTACTGGAGGTGGATCTGGTGCAAGCATCATCTTCTCTGGAT
TCCTTCGCAGTCGCAGAGGGTAGCTACCTGAAAGACTGGCTGCAATCGAT
TAAAAGTACGGCTGTAGGGGTTTTGGGTACACCCCCGCCGTCTGATCAAA
CGGCGTCAGTTACAGGTATTACCAGGTCCGAGCGAATGGGGGCACCTTCC
GTAGTCTCGATGAAGATAGGAGAAGCGTCGGTGACGGTGTTGCTCTCAAG
TTCACACTGTTCGGGAGATGAGGTATGTACGTTAGCCAAGCGCACGAATA
TTCAACGGGTAGCCGGGAGTTACGGTATACTTGATTTGCCCGTTTTGTCC
TCTTCATTGGAGGATCTTGCACCTTGGTCGACAACGGTACGTACAATAGC
CACCACTGACGGTCCGAAATGTTTGCCAGAGGTGGTGTATGTTAGGTCAG
GAACAGTGAAGTTAGATATTTTTCATCAGACTGCAGCTGTGGGGCTGTTT
GCCAGACCCCATGCTCGAAATATGTGGCGTACCCATGCTTTAATCGACAC
GGGTTCCTGTCTGTCATTTATTTTGCAGACGGCTTCGAAGTCGATATTTG
CTTGCGGATCAGCGTCCTCGACGGGTGTACGTCCAGTAGCGCCCGAAGGC
TGGACCGGTTTCCACGGAGCCCCGTTAACCTCCACCAAGCAGGCTCGACT
TAACGTACAGTTATACTACGGTTCGAAGGAGCCCACTGCTAGATTGGCCG
TAGACGCTTGTGTGATTCCGGACGGCGTCATCCAGCACGACGTACTTTTC
TGCAAAATTTGTGGACGCGTTTTCCTGTTCGAGAATATCGTGATGTTGGT
GAAAACGAAACCATGCTGACGTTGAAAACGAGCGACAACCCCGCGTCGGT
GCGTCGGTACCGAGTGGTTTTGTGGATGGAGTCAGGGAGATGACAGGGTA
CGTAGAAAATGTACAAAAAGGGGGCCGTGCGTTTCGAGTGATGTATAATG
GCGCACGCCTAATGACATACTACAAGAATCAGCGATATTGGATCAATTTT
GCACGTGGAAAATGCAAAAGGCACCACCGTCACGTCTGGCAAATATTACG
CGCGCCTTCGCGAATTTTGGTCGCCACAAGAAATCGTAATAAAGGCCGAT
GGTTGTCATTTACCTGTTTCTGTTTGTAGCCAAGATCAGAGTAACGTTGG
AAGAAATCATGTTATGAGCGTGTAATGCAACCCTCTCAACCCCGCTGATT
TGAACTAGGCTAACATAATTCCCTCATCGGTATCGCGCTCGATTCACATC
GTGCGCCAACAAGCTAGCCCCGATGACGTCCTGCCCGCGGAGTCGCTGAT
GGGGTTAATGGGCGCCAGGAAGGATGCTTTTGATAGGCTGTGGCGCAAAG
TATGGGTACATTTACGCGAGATACGGTATGATTTTACCAGGAGCGCGTGG
GATTGGTCTGATATCGATAAGATGGCTGAGGTGTTAACTGGCTTTGCTCA
CAGATTTTCCGAAAACAAAACTGATCTGGGATACTGCAGCACGCTGCCCT
TTGACATGGAGTTGCAACCCGGCACTCGGTCTGTCAAGCAGAGAGGGTAC
CGCCGTAATCTGGCGATAACTACCAAAGTTCAAGAGATTGATAAACTACT
AGCAACCAACATCTTCCGTTCTTCATACTCGAACTGGGCGAGCCCGCTGG
TGGTTGTCATGAAATCTGACGGTAGTATTCGCCTCACTTGTAGTTATAAG
CTGTTGAACGACGCTACTGTAGTTCCCGTTTTATGTTTGCCTTTTATTGA
CGATATGCTCGATGCTCTCGGCAGTTCAAACACCTTTTCGGTACTCGATT
TAGCAAGCGGTTTTTGGCAATGCGCCATGGACAAGGATTCGATCCCTTTA
ACCGCAGTATGCACTCAATCGGATCTGTATGAGTGGTTGCGAATGCCTAT
GGGTAGGAGTGGTTCGCCAGGGGCATTTCAGCGCCTTATGGCAGAAGTGT
GCAAAGGCTTGCAACGTGTTCAGTTGTGTCTGGACGATATCCTTGTTGAC
TCCAACTCCGCTAAATGTCACGTCGCGGACTTGAAATCCTTCTTGGGAAG
ACTCATAACTCATTACTTGAAGTTGTTACCGAAGAGAGCGCACATCGGAG
CTCCAGAAGTAACGTTTTTGGGACATTTGATCACCCCGCATGGTGTTTCT
CCGGATCCGACAAAGATCAACGCGTTACTAAAGATGCCGATGCTCTCCAA
ACGCGGAGAGTTGCGTTCACTTCTCTGCAGCATTCATACATGCGCAAGTT
GTTTGCCGGCTCTTCGAACGAAATCAGGGAACTCAACTACCTTTTGTGTT
ACGACGTGCCGTTTAGGTTTTCAGATCGGCATGCACGAATTACCAAGATA
ATTCTAAACCATCTTGCTAGCCCGACCGTATTCGCATTTCCAGATTATAA
CGCTGCCGTGGATGGGACACGCCATTTTCAACTCACGACCGATGCTTGCA
AACACGGTCTAGGCGCCGTTCTCGAACAGCTGCAACCCGATAACACCCTC
CGCCCGTTGCTATACATCAATCGCACCACTGATAACAACGAGAAGAACTG
GGATGCTACGGAATTTGGAATGCGCTGCATTGGTATGGGCGATCAAAAAA
GTGTGCGTGTTTTTTTCTATATGGTATTAAGTTTGATGCTTTCACGGATC
ACCGATCACTTCTTGACTATATTATTCTGTCGGAGAAAAAGCAGAAGGTC
CGACGGATGTGCGATATACTTGGCCAGTTCCAGTTATATTTGCGGTATAA
ACCCGGTACGTGGAATCAGCTCGCATATGCCTCCTCCCGCCTGCTGGTCC
CTGCCACCGACGACGATGAAAACGCTTGCCGTATTTTAGACCCGCGTGAA
GTTACAGTTTGCTTTGTCGGGCGCAGCGGAATCACGCCCACGTCCTTGCG
TTCAGTTGCGCTCGTGCAGTCGTTGTAGCAGACGCTGGTCCAGGGAACAC
GTTCCTTAACCACCGACGAGCAACTACAACTACAAAGATCATGTATTCCA
GACAGAATATCGTCCACTGCCCCTGTAATGAGGTATCGTATGCAACACCC
TGTTAAGAATATTCGATTGCCGTCTTCGAATGTTGTTGCCGTGACCCCTC
TGTACCGCCTTGTCAAGGACAGCTGAATACCAGTATAATACTCTACGCAT
TTCCGGTTGCACCCTACGGTCCTTCTGCGGACTCCGCCCTGGTGTTTTCG
GAAGCGTAGGAGCGACAGGTGCGCCTTTTGGGGGAGCGATTGTTTCAGCG
GAGCGCGACCGACTGGGCGACTGAGCATCAGGAGGACCCGTTGACTAGCA
TCGTCATAAAGTATGTAATATCCGAGCAACCGCTCCCGGTTCCGAATTTT
GTGACGACGGCGGCCACAGCAGGGCATTTCGAGATGGAGGTTTGCCGTTT
AGCTCGGCAGGGTACTCGGTAACACTTTACGATAATCGACACATTTTAGT
GAAACGTTCCATGGTCAAGCCCACGTCTCGACCTAACCGCGTGAGTGGAA
AATTCGAAAGTCTGCTCCATAATCAGTCCACCCGCATATACGTGCCGTTT
CTTTTACGCCTGTGGGTCATTAACTGCGTGCACAAAAAAGGTGTCCATTT
AGGAGTTCACATTACTCTAGCGTCTCTCAAACGATATTACTGGTGGATCG
GAATGTCAGCAAAGTGAAATGGTGGCTGCGAAACTGTTTCGTCTGTCAAG
TGGCGAAGCGTCTCGTCGCGTGCCCCGTTGGCCCCTTATTTCACTCCCGC
TTTCATCTGGCCCGGGGGAGATGGTCTCGTTCGATCTCCTCGGACCTTTC
CCCAAAACGGCACGTGATAACTCATACATTTTGCTGGTAGTTGATCTATC
TAGTCGCCATGCCGAACCGAATGCGTTGTCCAACGGAGAGAAGGCAGCAA
AAGGCTGTGCCTCACTCTTGGCGAACAACTACGTTACACGTTGGGATTGT
CCTCAGATATTATTGTCGGATAGGGAAGCGGAATTCACTCCAAAAGTGGT
GGAAGAAGTGTACCACATGTTGGGCTTGAAGAAATGCCTGACCAGTTATT
TCCACTCGCAAACTAATGGCTGTGTTGAACGTCTTAATCATACGGTTTGT
CAGATGTTATTACATGTCATCGGGTCACAGCAGGATAACTGGGGCGAGCT
TCTCTTGCAAGTAGTGTATACCCACAATAACCATATTAGTCAACCAACTG
GATTGGCTCCGAACGAAGCGCATATCGATAGGTATCCACGAATGCCCATG
ACAATTTTGACCCACAACATCAAGTAAATGGAAATCGTAGTTTGAAAAGG
GACGAGTTGGAATACTTGCAGCTGATGGTGGACAGGCAACGTCGGGCGTG
CGAGTTGGTGAGAGAGAGCGATCGCCTCATAAGGGCGAAACATAGGGCAA
TTAATGCCGTAATCGATGACGTCGTGAACGAAAGCCCACTTTTCGAGGTT
GGGAACTGGGTGTGGGTGTACAATGTATAAGATACTCTGATTACCGCTGG
AGAGAGTGTCGCTCCTGGTCTCAGCGGGGAGAGGTCGGCAATTAAAGCTA
AATTCGCAAATAACTGGCTGGACGAATCCTTTCAAAATACTGGGAGTAGG
CCCGTGCAAAATCGGCGAACAGGTGGTAGGTTCCAAGTGACTGCTTTTAG
ATAGGCCCTACAATGAACGAACTGCTTCCCGTGTTTCTGTACGGCGCTGT
AGACGCTGTTTCCGGCCACAGGAGAAGGGAAATCGACCGGAATTCCACGC
ACCTAAGCCCGAACGGGTAGGGTAGCTCGTGTACTGAGCATGACTGGAAG
TCTAGTCAGAGGTTTTTAGTGGGTGAAAATCCCACACTGCCTACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7969:138..6734-

>mRNA_H-paniculata_contig7969.15993.1 ID=mRNA_H-paniculata_contig7969.15993.1|Name=mRNA_H-paniculata_contig7969.15993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig7969:138..6734- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCTGCGAAACTGTTTCGTCTGTCAAGTGGCGAAGCGTCTCGTCG
CGTGCCCCGTTGGCCCCTTATTTCACTCCCGCTTTCATCTGGCCCGGGGG
AGATGGTCTCGTTCGATCTCCTCGGACCTTTCCCCAAAACGGCACGTGAT
AACTCATACATTTTGCTGGTAGTTGATCTATCTAGTCGCCATGCCGAACC
GAATGCGTTGTCCAACGGAGAGAAGGCAGCAAAAGGCTGTGCCTCACTCT
TGGCGAACAACTACGTTACACGTTGGGATTGTCCTCAGATATTATTGTCG
GATAGGGAAGCGGAATTCACTCCAAAAGTGGTGGAAGAAGTGTACCACAT
GTTGGGCTTGAAGAAATGCCTGACCAGTTATTTCCACTCGCAAACTAATG
GCTGTGTTGAACGTCTTAATCATACGGTTTGTCAGATGTTATTACATGTC
ATCGGGTCACAGCAGGATAACTGGGGCGAGCTTCTCTTGCAAGTAGTGTA
TACCCACAATAACCATATTAGTCAACCAACTGGATTGGCTCCGAACGAAG
CGCATATCGATAGGTATCCACGAATGCCCATGACAATTTTGACCCACAAC
ATCAAGTAAATGGTGGCTGCGAAACTGTTTCGTCTGTCAAGTGGCGAAGC
GTCTCGTCGCGTGCCCCGTTGGCCCCTTATTTCACTCCCGCTTTCATCTG
GCCCGGGGGAGATGGTCTCGTTCGATCTCCTCGGACCTTTCCCCAAAACG
GCACGTGATAACTCATACATTTTGCTGGTAGTTGATCTATCTAGTCGCCA
TGCCGAACCGAATGCGTTGTCCAACGGAGAGAAGGCAGCAAAAGGCTGTG
CCTCACTCTTGGCGAACAACTACGTTACACGTTGGGATTGTCCTCAGATA
TTATTGTCGGATAGGGAAGCGGAATTCACTCCAAAAGTGGTGGAAGAAGT
GTACCACATGTTGGGCTTGAAGAAATGCCTGACCAGTTATTTCCACTCGC
AAACTAATGGCTGTGTTGAACGTCTTAATCATACGGTTTGTCAGATGTTA
TTACATGTCATCGGGTCACAGCAGGATAACTGGGGCGAGCTTCTCTTGCA
AGTAGTGTATACCCACAATAACCATATTAGTCAACCAACTGGATTGGCTC
CGAACGAAGCGCATATCGATAGGTATCCACGAATGCCCATGACAATTTTG
ACCCACAACATCAAGTAA
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