mRNA_H-paniculata_contig79614.15989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig79614.15989.1
Unique NamemRNA_H-paniculata_contig79614.15989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A2E6MCB0_9GAMM (FMN_bind domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6MCB0_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 7.370e-11
Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 1
Query:    1 TGPRIEAQRQAALRSSLTQLAGTARLQSLKQLADWP---LRLCDQLTLVQIQPRGYGGAITLAVALVP-GAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAVDAVTGATVTVQALRNGLQTLMTEAVSDTQ 438
            T PRI AQRQ   R+ +  L    +   LK +ADW    L  C    L ++   GY G I L     P  A  P    L+V++H ETPGIGDFI    D+    R     + A   +  A DA++GATVT  AL+    T+     S+T+
Sbjct:   32 TAPRIAAQRQEQARAXMRSLLQPQQQIELKTVADWRDDILSACTDWWLXRVSEDGYAGPIELLAHWQPFDANQPGRIKLRVLKHLETPGIGDFIDHERDNYLPDR-----DGATVAQWQAADALSGATVTFNALQRAAATVAQRLDSETR 176          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: UPI00101C786A (electron transport complex subunit RsxG n=1 Tax=Steroidobacter soli TaxID=2497877 RepID=UPI00101C786A)

HSP 1 Score: 66.2 bits (160), Expect = 1.900e-10
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  142 IQPRGYGGAITLAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAV-------DAVTGATVTVQAL 390
            + P GY G + L VA+ PG Q   +  +QV+RH ETPG+GD    R D  WL RFRGLS T   ++   V       DA TGAT+T +A+
Sbjct:  101 VAPDGYRGPLELLVAIAPGGQ---LIGVQVIRHNETPGLGDAFENR-DAGWLDRFRGLSLTQPPQQRWTVRRDGGDFDAFTGATITPRAI 186          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: UPI001932943F (electron transport complex subunit RsxG n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI001932943F)

HSP 1 Score: 65.9 bits (159), Expect = 2.690e-10
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  127 LTLVQIQPRGYGGAITLAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAV-------DAVTGATVTVQAL 390
            + L  I P GY G + L VA+ PG Q   +  +QV+RH ETPG+GD    R D  WL RFRGLS +   ++  +V       DA TGAT+T +A+
Sbjct:   97 VALRSIAPDGYRGPLELLVAIAPGGQ---LLGVQVIRHNETPGLGDAFENR-DAGWLDRFRGLSLSNPPQQRWSVRRDGGDFDAFTGATITPRAI 187          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A829YNL3_9GAMM (Ion-translocating oxidoreductase complex subunit G n=3 Tax=Steroidobacter TaxID=469322 RepID=A0A829YNL3_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 3.750e-10
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  142 IQPRGYGGAITLAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAV-------DAVTGATVTVQAL 390
            I P GY G + L VA+ PG Q   +  +QV+RH ETPG+GD    R D  WL +FRGLS T   ++   V       DA TGAT+T +A+
Sbjct:  102 IAPDGYRGPLELLVAIAPGGQ---LLGVQVIRHDETPGLGDAFENR-DAGWLDKFRGLSLTKPPQQRWTVRRDGGDFDAFTGATITPRAI 187          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A3R7TMB1_9GAMM (FMN-binding protein n=1 Tax=Gammaproteobacteria bacterium TMED92 TaxID=1986770 RepID=A0A3R7TMB1_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 3.860e-10
Identity = 55/141 (39.01%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    1 TGPRIEAQRQA---ALRSSLTQLAGTARLQSLKQLADWPLRLCDQLTLVQIQPRGYGGAITLAVALVPGAQG-PRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAVDAVTGATVTVQALRNGLQTL 411
            T P+I A RQA   AL SSL        LQSL+Q  D  L  C    L+++   GY G I L         G P    L+V++H ETPGIGDFI    DD       G     +T+   ++D VTGAT+T  ALR   Q++
Sbjct:   32 TAPQIAAHRQAQARALMSSLLLPRQQQELQSLQQWHDNILSACSDWWLLRLTETGYAGPIDLLAYWQTFTDGQPSQLKLRVLKHLETPGIGDFIDHERDDY----LPGKDSLTVTDWQ-SMDTVTGATITHSALRRAAQSV 167          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A523M2A7_9GAMM (FMN-binding protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M2A7_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 4.870e-9
Identity = 43/104 (41.35%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  115 LCDQLTLVQIQPRGYGGAITLAVALVPGAQGPR-----ISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAVDAVTGATVTVQALRNGLQTL 411
            LC+ L LV+ + RGYGG I L  AL             +  L+V RHQETPGI DFI Q  D  WL     L    +      V AVTGAT+T +A+  GL  +
Sbjct:   95 LCNGLALVRGETRGYGGPIHLLAALQLNTTRDEAGHLVVQGLRVTRHQETPGIADFINQP-DHPWLQHLALLDADEIGR----VQAVTGATITSRAILRGLDAM 193          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A2D9JMS8_9GAMM (Ion-translocating oxidoreductase complex subunit G n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9JMS8_9GAMM)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-8
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  148 PRGYGGAITLAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSE-TALTERALA--VDAVTGATVTVQALRNGLQ 405
            P GY G I LAVA  P      +  ++V+RH+ETPG+GD I +R    WL +F G+SE +AL  RA    +D +T AT+T +A+   ++
Sbjct:   98 PDGYSGPIDLAVAFAPSGT---VLGVEVLRHRETPGLGDAIERRRGP-WLQQFEGMSENSALRLRAAGGEIDGITSATITARAVAGAVR 182          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A2D5L9M1_9GAMM (FMN_bind domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5L9M1_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 5.630e-8
Identity = 51/151 (33.77%), Postives = 70/151 (46.36%), Query Frame = 1
Query:    1 TGPRIEAQRQAALRSSLTQLAGTARLQSLKQLADW---PLRLCDQLTLVQIQPRGYGGAIT-LAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAVDAVTGATVTVQALRNGLQTLMTEAVSDTQL 441
            T PRIE QRQ   R+ +  L    +   LK L  W    L  C   +L+++   GY G I  LA         P +  L+V++H ETPGIGDFI     D    R        LTE   A D ++GAT+T  AL+   ++      SD ++
Sbjct:   32 TAPRIETQRQEQARALMNSLLQPEQRIELKALDGWRGDTLSACTDWSLLRLSENGYAGPIEFLAYWQTFEGNLPSVIKLRVLKHLETPGIGDFIDHERSDYLPDR----DNWTLTEWQTA-DTLSGATITHNALKRAAESAAQYMDSDARI 177          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: A0A2E7U4I7_9GAMM (FMN_bind domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7U4I7_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-7
Identity = 51/157 (32.48%), Postives = 71/157 (45.22%), Query Frame = 1
Query:    1 TGPRIEAQRQAALRSSLTQLAGTARLQSLKQLADWP---LRLCDQLTLVQIQPRGYGGAITL-AVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRG-------DDAWLARFRGLSETALTERALAVDAVTGATVTVQALRNGLQTLMTEAVSDTQ 438
            T PRI  QRQ   R+ +  L    +   L  +++W    L  C    L+ I   GY G I L A     G   P +  L+V+RH ETPGIGDFI           D + LA+++              DA++GATVT  ALR   + +     +DT+
Sbjct:   32 TAPRIATQRQEQARALMRSLLLPQQXTELNTVSNWRNDILSACTDWWLLXITENGYAGPIELLAYWQTFGDDQPSLIKLRVLRHLETPGIGDFIDHERNXYLPDRDGSTLAQWQD------------ADALSGATVTYNALRRATEKVAQRLDNDTR 176          
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Match: C5BTA1_TERTT (Ion-translocating oxidoreductase complex subunit G n=3 Tax=Teredinibacter turnerae TaxID=2426 RepID=C5BTA1_TERTT)

HSP 1 Score: 56.6 bits (135), Expect = 7.640e-7
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  139 QIQPRGYGGAITLAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLARFRGLSETALTERALAV-------DAVTGATVTVQALRNGL 402
            Q++  GYGG ITL +AL P  +   I  L+ + H+ETPG+ D I     D W+  F GLS T   +   AV       D  TGAT+T +A+  G+
Sbjct:  103 QVETEGYGGTITLMLALTPQGE---IVGLRTLSHKETPGLADKIETDKSD-WILGFNGLSLTNTAKEKWAVKKDGGQFDQFTGATITPRAVVKGV 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79614.15989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6MCB0_9GAMM7.370e-1136.00FMN_bind domain-containing protein n=1 Tax=Gammapr... [more]
UPI00101C786A1.900e-1044.44electron transport complex subunit RsxG n=1 Tax=St... [more]
UPI001932943F2.690e-1043.16electron transport complex subunit RsxG n=1 Tax=St... [more]
A0A829YNL3_9GAMM3.750e-1044.44Ion-translocating oxidoreductase complex subunit G... [more]
A0A3R7TMB1_9GAMM3.860e-1039.01FMN-binding protein n=1 Tax=Gammaproteobacteria ba... [more]
A0A523M2A7_9GAMM4.870e-941.35FMN-binding protein n=2 Tax=Gammaproteobacteria ba... [more]
A0A2D9JMS8_9GAMM1.680e-841.57Ion-translocating oxidoreductase complex subunit G... [more]
A0A2D5L9M1_9GAMM5.630e-833.77FMN_bind domain-containing protein n=2 Tax=Gammapr... [more]
A0A2E7U4I7_9GAMM1.090e-732.48FMN_bind domain-containing protein n=1 Tax=Gammapr... [more]
C5BTA1_TERTT7.640e-738.95Ion-translocating oxidoreductase complex subunit G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79614contigH-paniculata_contig79614:9..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue4.2e-08
Seed eggNOG ortholog1479235.KK366039_gene548
Preferred namernfG
KEGG koko:K03612,ko:K03613
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009279,GO:0016020,GO:0016491,GO:0016651,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0055114,GO:0071944
EggNOG free text desc.Part of a membrane complex involved in electron transport
EggNOG OGs1RDEP@1224,1RPAD@1236,1XJEJ@135619,COG4659@1,COG4659@2
COG Functional cat.C
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930993.9526052-CDS-H-paniculata_contig79614:8..4551622930993.9526052-CDS-H-paniculata_contig79614:8..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79614 9..455 +
1691481542.1844473-CDS-H-paniculata_contig79614:8..4551691481542.1844473-CDS-H-paniculata_contig79614:8..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79614 9..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79614.15989.1prot_H-paniculata_contig79614.15989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig79614 9..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig79614.15989.1

>prot_H-paniculata_contig79614.15989.1 ID=prot_H-paniculata_contig79614.15989.1|Name=mRNA_H-paniculata_contig79614.15989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
TGPRIEAQRQAALRSSLTQLAGTARLQSLKQLADWPLRLCDQLTLVQIQP
RGYGGAITLAVALVPGAQGPRISNLQVVRHQETPGIGDFIAQRGDDAWLA
RFRGLSETALTERALAVDAVTGATVTVQALRNGLQTLMTEAVSDTQLFS
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mRNA from alignment at H-paniculata_contig79614:9..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig79614.15989.1 ID=mRNA_H-paniculata_contig79614.15989.1|Name=mRNA_H-paniculata_contig79614.15989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig79614:9..455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGGACCACGCATCGAGGCACAGCGTCAGGCCGCCCTGCGCAGCAGCCT GACTCAGCTCGCTGGCACGGCCCGGCTGCAGTCTCTGAAGCAACTGGCAG ACTGGCCGCTACGGCTGTGCGACCAGCTGACGCTGGTTCAGATTCAGCCC CGGGGCTATGGCGGCGCCATCACCCTGGCAGTAGCGCTGGTGCCCGGTGC GCAGGGCCCGAGAATCAGCAATCTACAGGTGGTACGGCACCAGGAAACGC CGGGTATTGGCGACTTCATTGCGCAGCGCGGTGACGATGCGTGGCTGGCG CGCTTTCGCGGCTTATCGGAAACCGCCCTGACCGAGCGTGCGCTAGCCGT GGATGCCGTCACTGGCGCCACGGTGACCGTGCAAGCGCTGCGCAACGGGC TGCAGACCCTGATGACAGAGGCCGTTAGTGACACACAGCTGTTCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig79614:9..455+

>mRNA_H-paniculata_contig79614.15989.1 ID=mRNA_H-paniculata_contig79614.15989.1|Name=mRNA_H-paniculata_contig79614.15989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig79614:9..455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGGACCACGCATCGAGGCACAGCGTCAGGCCGCCCTGCGCAGCAGCCT
GACTCAGCTCGCTGGCACGGCCCGGCTGCAGTCTCTGAAGCAACTGGCAG
ACTGGCCGCTACGGCTGTGCGACCAGCTGACGCTGGTTCAGATTCAGCCC
CGGGGCTATGGCGGCGCCATCACCCTGGCAGTAGCGCTGGTGCCCGGTGC
GCAGGGCCCGAGAATCAGCAATCTACAGGTGGTACGGCACCAGGAAACGC
CGGGTATTGGCGACTTCATTGCGCAGCGCGGTGACGATGCGTGGCTGGCG
CGCTTTCGCGGCTTATCGGAAACCGCCCTGACCGAGCGTGCGCTAGCCGT
GGATGCCGTCACTGGCGCCACGGTGACCGTGCAAGCGCTGCGCAACGGGC
TGCAGACCCTGATGACAGAGGCCGTTAGTGACACACAGCTGTTCAGCACC
GGACCACGCATCGAGGCACAGCGTCAGGCCGCCCTGCGCAGCAGCCTGAC
TCAGCTCGCTGGCACGGCCCGGCTGCAGTCTCTGAAGCAACTGGCAGACT
GGCCGCTACGGCTGTGCGACCAGCTGACGCTGGTTCAGATTCAGCCCCGG
GGCTATGGCGGCGCCATCACCCTGGCAGTAGCGCTGGTGCCCGGTGCGCA
GGGCCCGAGAATCAGCAATCTACAGGTGGTACGGCACCAGGAAACGCCGG
GTATTGGCGACTTCATTGCGCAGCGCGGTGACGATGCGTGGCTGGCGCGC
TTTCGCGGCTTATCGGAAACCGCCCTGACCGAGCGTGCGCTAGCCGTGGA
TGCCGTCACTGGCGCCACGGTGACCGTGCAAGCGCTGCGCAACGGGCTGC
AGACCCTGATGACAGAGGCCGTTAGTGACACACAGCTGTTCAGC
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