mRNA_H-paniculata_contig7948.15977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7948.15977.1
Unique NamemRNA_H-paniculata_contig7948.15977.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7948.15977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7948contigH-paniculata_contig7948:2560..3086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size527
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.7727911-UTR-H-paniculata_contig7948:2559..25881622930991.7727911-UTR-H-paniculata_contig7948:2559..2588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7948 2560..2588 +
1691481541.3866065-UTR-H-paniculata_contig7948:2559..25881691481541.3866065-UTR-H-paniculata_contig7948:2559..2588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7948 2560..2588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.7881277-CDS-H-paniculata_contig7948:2588..30861622930991.7881277-CDS-H-paniculata_contig7948:2588..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7948 2589..3086 +
1691481541.3976417-CDS-H-paniculata_contig7948:2588..30861691481541.3976417-CDS-H-paniculata_contig7948:2588..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7948 2589..3086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7948.15977.1prot_H-paniculata_contig7948.15977.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7948 2589..3086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7948.15977.1

>prot_H-paniculata_contig7948.15977.1 ID=prot_H-paniculata_contig7948.15977.1|Name=mRNA_H-paniculata_contig7948.15977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MLDPKVGPYFYLGPQRNHPKDSMCVLSETGAVVTARDVTWAHVPARSTPS
PVQPKCRTPAESEERGNMEYAYLPAPTALQEAGKEVATPYPPAEASSPLT
TATSSSSPSSSFSTASSPTSTASSPTSTASSSSLTSATSLVPAPEIRRDS
LSMPSGVSSSSIAQDS
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mRNA from alignment at H-paniculata_contig7948:2560..3086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7948.15977.1 ID=mRNA_H-paniculata_contig7948.15977.1|Name=mRNA_H-paniculata_contig7948.15977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=527bp|location=Sequence derived from alignment at H-paniculata_contig7948:2560..3086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGTATGGTGAAGTAAAGAGAAGCAATATGTTAGATCCGAAAGTAGGA
CCGTATTTCTACCTTGGACCGCAACGCAACCATCCCAAGGACTCTATGTG
CGTCCTATCTGAAACGGGTGCCGTCGTAACAGCTCGCGATGTCACGTGGG
CTCATGTACCTGCGCGGTCCACTCCCTCCCCTGTGCAGCCGAAATGTCGG
ACGCCGGCAGAAAGCGAAGAGAGGGGAAACATGGAGTATGCATATTTACC
TGCACCGACAGCTTTGCAGGAAGCCGGGAAGGAGGTAGCGACACCATATC
CCCCAGCCGAGGCTTCTTCGCCATTAACTACTGCAACGTCTTCCTCATCT
CCATCGTCGTCTTTCTCAACAGCTTCGTCGCCTACCTCGACAGCTTCGTC
GCCTACCTCGACAGCTTCGTCGTCTTCGTTGACCTCTGCGACATCGCTGG
TGCCTGCGCCGGAAATCAGGAGGGATTCTCTGTCGATGCCTTCTGGAGTC
TCGTCGTCTTCAATTGCGCAAGACAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig7948:2560..3086+

>mRNA_H-paniculata_contig7948.15977.1 ID=mRNA_H-paniculata_contig7948.15977.1|Name=mRNA_H-paniculata_contig7948.15977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig7948:2560..3086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGATCCGAAAGTAGGACCGTATTTCTACCTTGGACCGCAACGCAA
CCATCCCAAGGACTCTATGTGCGTCCTATCTGAAACGGGTGCCGTCGTAA
CAGCTCGCGATGTCACGTGGGCTCATGTACCTGCGCGGTCCACTCCCTCC
CCTGTGCAGCCGAAATGTCGGACGCCGGCAGAAAGCGAAGAGAGGGGAAA
CATGGAGTATGCATATTTACCTGCACCGACAGCTTTGCAGGAAGCCGGGA
AGGAGGTAGCGACACCATATCCCCCAGCCGAGGCTTCTTCGCCATTAACT
ACTGCAACGTCTTCCTCATCTCCATCGTCGTCTTTCTCAACAGCTTCGTC
GCCTACCTCGACAGCTTCGTCGCCTACCTCGACAGCTTCGTCGTCTTCGT
TGACCTCTGCGACATCGCTGGTGCCTGCGCCGGAAATCAGGAGGGATTCT
CTGTCGATGCCTTCTGGAGTCTCGTCGTCTTCAATTGCGCAAGACAGTAT
GTTAGATCCGAAAGTAGGACCGTATTTCTACCTTGGACCGCAACGCAACC
ATCCCAAGGACTCTATGTGCGTCCTATCTGAAACGGGTGCCGTCGTAACA
GCTCGCGATGTCACGTGGGCTCATGTACCTGCGCGGTCCACTCCCTCCCC
TGTGCAGCCGAAATGTCGGACGCCGGCAGAAAGCGAAGAGAGGGGAAACA
TGGAGTATGCATATTTACCTGCACCGACAGCTTTGCAGGAAGCCGGGAAG
GAGGTAGCGACACCATATCCCCCAGCCGAGGCTTCTTCGCCATTAACTAC
TGCAACGTCTTCCTCATCTCCATCGTCGTCTTTCTCAACAGCTTCGTCGC
CTACCTCGACAGCTTCGTCGCCTACCTCGACAGCTTCGTCGTCTTCGTTG
ACCTCTGCGACATCGCTGGTGCCTGCGCCGGAAATCAGGAGGGATTCTCT
GTCGATGCCTTCTGGAGTCTCGTCGTCTTCAATTGCGCAAGACAGT
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