mRNA_H-paniculata_contig79428.15973.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig79428.15973.1
Unique NamemRNA_H-paniculata_contig79428.15973.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN)

HSP 1 Score: 110 bits (275), Expect = 7.010e-26
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 NGIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFL 333
            NGI  + + +YTPQQN V ER  R++ E++R+ +    + N YW+EA+    Y LNRA T+   + TP E W G+ P +DHLRVFGC AYV    Q R KLDDK    +F+
Sbjct:  585 NGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMLKMKELPNTYWAEAVACATYLLNRATTKSVPKLTPQEAWSGKKPNVDHLRVFGCIAYVHIPKQHRSKLDDKTERAIFV 695          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A1W7R6D6_AEDAL (Putative polyprotein (Fragment) n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6D6_AEDAL)

HSP 1 Score: 109 bits (273), Expect = 1.250e-25
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    4 GIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKA 315
            GIK E++AAY+PQQN V ER  RS+ EM R  ++ A M NR+W+EA+ +  Y  NR P+   +R TP E WY   P L+HL+ FGCT YV+  S +R+KLD KA
Sbjct:  554 GIKAEYTAAYSPQQNGVSERKNRSLSEMGRCLLLDAKMDNRFWAEAINTACYLQNRLPSAAVDR-TPYEIWYNRKPDLNHLKRFGCTGYVLIPSVKRKKLDVKA 656          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A2Z6LTJ1_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LTJ1_TRISU)

HSP 1 Score: 108 bits (269), Expect = 4.400e-25
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 GIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFL 333
            GI+Q+ + AY+PQQN + ER  R++ EMAR+ M    + N +W+EA+ + VY LNR PT+     TP E W G+ P   HLRVFG   Y+    Q+R KL+DK   G+FL
Sbjct:  556 GIEQQLTVAYSPQQNGMSERKNRTVMEMARSMMKDKGLPNTFWAEAVYTAVYILNRCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHVPKQKRHKLEDKTTKGIFL 665          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: UPI000A2AF52F (uncharacterized protein LOC107607928 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2AF52F)

HSP 1 Score: 107 bits (268), Expect = 6.140e-25
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 GIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFL 333
            GI+++F+ AYTPQQN V ER  R++ E ARA + TA ++  +W+EA+++  Y +NR+P+      TP E W G+ P    L +FGC  YVM+ SQ+R KLD K+   +FL
Sbjct:  268 GIQRQFTVAYTPQQNGVAERMNRTLLERARAMLQTAGLAKFFWAEAVKTACYVINRSPSTAIGLKTPMEMWQGKPPNYSSLHIFGCPVYVMYNSQERTKLDPKSRKCIFL 377          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 107 bits (267), Expect = 8.190e-25
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 GIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFL 333
            GIK +++A+Y+PQQN V ER  RS+ EM R  +  A +  +YW+EA+ + VY  N +PT+PRN  TP E W+G  PK++HLR+FGC A+      +R+KL   A    FL
Sbjct:  123 GIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFL 231          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU)

HSP 1 Score: 106 bits (264), Expect = 2.040e-24
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 NGIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKA 315
            NGIK +F+A YTPQQN V ER  R+I E+AR+ +    M NR+W+EA+   VY LNRA +      TP E W G  P + HLR+FG  AY     + RRKLDDK+
Sbjct:   76 NGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKS 180          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU)

HSP 1 Score: 106 bits (264), Expect = 2.090e-24
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 NGIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKA 315
            NGIK +F+A YTPQQN V ER  R+I E+AR+ +    M NR+W+EA+   VY LNRA +      TP E W G  P + HLR+FG  AY     + RRKLDDK+
Sbjct:  642 NGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKS 746          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU)

HSP 1 Score: 106 bits (264), Expect = 2.100e-24
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 NGIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKA 315
            NGIK +F+A YTPQQN V ER  R+I E+AR+ +    M NR+W+EA+   VY LNRA +      TP E W G  P + HLR+FG  AY     + RRKLDDK+
Sbjct:  238 NGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKS 342          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A1W7R6G9_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6G9_AEDAL)

HSP 1 Score: 106 bits (264), Expect = 2.110e-24
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    4 GIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFL 333
            GI Q+F+ AYTPQQN V ER  RS+ EMAR  ++ A + N+YW+EA+ +  Y  NR PT+P    TP E W GE P L HL++FG  AYV   S++R K   K+   +F+
Sbjct:  271 GITQQFTTAYTPQQNGVSERKNRSLVEMARCMILDAQLPNKYWAEAVNTATYVQNRLPTKP-IPSTPYEIWTGEKPDLSHLKIFGSWAYVWIPSEKRSKFQAKSKKMLFV 379          
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU)

HSP 1 Score: 106 bits (264), Expect = 2.140e-24
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 NGIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRSVVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKA 315
            NGIK +F+A YTPQQN V ER  R+I E+AR+ +    M NR+W+EA+   VY LNRA +      TP E W G  P + HLR+FG  AY     + RRKLDDK+
Sbjct:  642 NGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKS 746          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79428.15973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A251TN47_HELAN7.010e-2645.95Putative zinc finger, CCHC-type n=2 Tax=Helianthus... [more]
A0A1W7R6D6_AEDAL1.250e-2550.96Putative polyprotein (Fragment) n=2 Tax=Aedes albo... [more]
A0A2Z6LTJ1_TRISU4.400e-2545.45Integrase catalytic domain-containing protein n=2 ... [more]
UPI000A2AF52F6.140e-2544.55uncharacterized protein LOC107607928 n=1 Tax=Arach... [more]
A0A2M4CK12_ANODA8.190e-2545.45Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A4Y1RLQ4_PRUDU2.040e-2449.52Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A5H2YBV8_PRUDU2.090e-2449.52Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1RY62_PRUDU2.100e-2449.52NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A0A1W7R6G9_AEDAL2.110e-2447.27Putative pol polyprotein (Fragment) n=1 Tax=Aedes ... [more]
A0A4Y1RM74_PRUDU2.140e-2449.52Transposable element protein n=7 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79428contigH-paniculata_contig79428:217..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.4
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.3740807-CDS-H-paniculata_contig79428:216..5491622930991.3740807-CDS-H-paniculata_contig79428:216..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79428 217..549 +
1691481541.2473915-CDS-H-paniculata_contig79428:216..5491691481541.2473915-CDS-H-paniculata_contig79428:216..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79428 217..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79428.15973.1prot_H-paniculata_contig79428.15973.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig79428 217..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig79428.15973.1

>prot_H-paniculata_contig79428.15973.1 ID=prot_H-paniculata_contig79428.15973.1|Name=mRNA_H-paniculata_contig79428.15973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
NGIKQEFSAAYTPQQNDVEERSWRSIFEMARANMITANMSNRYWSEALRS
VVYCLNRAPTRPRNRGTPSEKWYGETPKLDHLRVFGCTAYVMFQSQQRRK
LDDKAWAGVFL
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mRNA from alignment at H-paniculata_contig79428:217..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig79428.15973.1 ID=mRNA_H-paniculata_contig79428.15973.1|Name=mRNA_H-paniculata_contig79428.15973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig79428:217..549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGCATCAAGCAGGAATTCTCTGCCGCCTACACACCGCAACAAAATGA TGTAGAGGAGCGCAGCTGGCGCAGTATTTTCGAGATGGCAAGAGCTAACA TGATCACCGCCAACATGAGTAATCGATATTGGTCGGAAGCGTTGCGCTCG GTAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCGCAACCGAGGAAC GCCAAGTGAAAAATGGTACGGCGAGACACCAAAGTTGGACCACCTTCGCG TCTTCGGCTGTACGGCGTATGTTATGTTCCAATCGCAACAGAGACGCAAG CTCGACGACAAAGCGTGGGCGGGGGTGTTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig79428:217..549+

>mRNA_H-paniculata_contig79428.15973.1 ID=mRNA_H-paniculata_contig79428.15973.1|Name=mRNA_H-paniculata_contig79428.15973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig79428:217..549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGCATCAAGCAGGAATTCTCTGCCGCCTACACACCGCAACAAAATGA
TGTAGAGGAGCGCAGCTGGCGCAGTATTTTCGAGATGGCAAGAGCTAACA
TGATCACCGCCAACATGAGTAATCGATATTGGTCGGAAGCGTTGCGCTCG
GTAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCGCAACCGAGGAAC
GCCAAGTGAAAAATGGTACGGCGAGACACCAAAGTTGGACCACCTTCGCG
TCTTCGGCTGTACGGCGTATGTTATGTTCCAATCGCAACAGAGACGCAAG
CTCGACGACAAAGCGTGGGCGGGGGTGTTTCTGAATGGCATCAAGCAGGA
ATTCTCTGCCGCCTACACACCGCAACAAAATGATGTAGAGGAGCGCAGCT
GGCGCAGTATTTTCGAGATGGCAAGAGCTAACATGATCACCGCCAACATG
AGTAATCGATATTGGTCGGAAGCGTTGCGCTCGGTAGTGTACTGCCTAAA
TCGCGCCCCGACGCGACCGCGCAACCGAGGAACGCCAAGTGAAAAATGGT
ACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCGGCTGTACGGCG
TATGTTATGTTCCAATCGCAACAGAGACGCAAGCTCGACGACAAAGCGTG
GGCGGGGGTGTTTCTG
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