mRNA_H-paniculata_contig7942.15971.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7942.15971.1
Unique NamemRNA_H-paniculata_contig7942.15971.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7942.15971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7942contigH-paniculata_contig7942:3245..4511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size406
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7942.15971.1prot_H-paniculata_contig7942.15971.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7942 3245..4351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.225011-CDS-H-paniculata_contig7942:3244..33101622930991.225011-CDS-H-paniculata_contig7942:3244..3310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7942 3245..3310 -
1691481541.192872-CDS-H-paniculata_contig7942:3244..33101691481541.192872-CDS-H-paniculata_contig7942:3244..3310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7942 3245..3310 -
1622930991.2441714-CDS-H-paniculata_contig7942:3886..40091622930991.2441714-CDS-H-paniculata_contig7942:3886..4009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7942 3887..4009 -
1691481541.201813-CDS-H-paniculata_contig7942:3886..40091691481541.201813-CDS-H-paniculata_contig7942:3886..4009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7942 3887..4009 -
1622930991.264761-CDS-H-paniculata_contig7942:4294..43511622930991.264761-CDS-H-paniculata_contig7942:4294..4351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7942 4295..4351 -
1691481541.2133763-CDS-H-paniculata_contig7942:4294..43511691481541.2133763-CDS-H-paniculata_contig7942:4294..4351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7942 4295..4351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.2830338-UTR-H-paniculata_contig7942:4351..45111622930991.2830338-UTR-H-paniculata_contig7942:4351..4511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7942 4352..4511 -
1691481541.224967-UTR-H-paniculata_contig7942:4351..45111691481541.224967-UTR-H-paniculata_contig7942:4351..4511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7942 4352..4511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7942.15971.1

>prot_H-paniculata_contig7942.15971.1 ID=prot_H-paniculata_contig7942.15971.1|Name=mRNA_H-paniculata_contig7942.15971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MKANTTRASYLTTATRDKWMKFNRCPPHGIKRGSLECSGAHELDVRQQGH
QLEHVGVEKQALMIHKAVMGVSFHQLDKIYLP
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mRNA from alignment at H-paniculata_contig7942:3245..4511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7942.15971.1 ID=mRNA_H-paniculata_contig7942.15971.1|Name=mRNA_H-paniculata_contig7942.15971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1267bp|location=Sequence derived from alignment at H-paniculata_contig7942:3245..4511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTGTGTGCTGCACGTAGAGTCTGTACTGAGATGACTCTCTGAACAGC
AGCGGGTCCTCCCTATCCGCCTAATTATATCGTACGCGTAATTTCCGCTG
CGTTTCTTCAGTACGCCGCCACACGTAGGTCGTCTGTGGGTAGCGGTGCC
CAACGGGCTCATGAAGGCCAATACAACACGGGCAAGCTACCTTACAACGG
CTACACGCGACAAATGGGTCAGTGATTCACATATCGTACTACTCTATATT
GTACCCTTCACGGTACAATACAAGGAAACTCACAACCGCACAACCTTGAA
CAACGAGAACAGTTGGCATGTTGACAGACAGCGAAGACAAAACGAACAAA
CACACAGTATCTTATCTTTTTCCATTCCCGATTTGTTTTTATCCGTGAGT
TTTGTTGTACGCCGTGGTTACTTCCCTCCGTTTTATCTTTTTCTGTTTTC
CGTTGTTGCTTCCCTTTTGGATTTTTTTAATGTATTTTCGTCTGTTATGA
AGATGAAATTCAATAGGTGTCCTCCACATGGGATCAAACGCGGTAGTCTG
GAATGTTCAGGAGCCCATGAACTTGATGTGCGCCAACAAGGACACCAACT
TGAACACGTTGGAGTTGAGAAACAGGTACGGAGGGAACAGTAGGCGAACG
ATGACCTAGATAAGGTACAGCACCATAGTACCGAGCTGATGAGAGGTACA
CTATACCTTGTTTGTTGGTTGAAGACATGTACCTGATTGAAATACCTCAG
ATTTGAGAAACCTTGGCAACGTACAATGGGTTCAATAGGCAAACAATGGC
CTGTATACGGTATAGTGCCATGATGCCGAGCCACAAACGGTTCCACAGTA
TACCATTTTGGCTAGAGGTATTGTACCTTATTGATTGGAAAGCTATACCT
CATTATTAGTCGGGGGACCTCGTTGACTCTGTTCGTTCGTTTATTGGTTA
GTATAGACTATTGGAGTATGTTTACTGCACAGTCAATTTGTTCTCAACAA
TTATAGAGGAACACATGTAAACCACATTTGTTTTTTCTTGCTTCGCTGTG
TTCTGTCTCTGTCTCTATCCCTTTATGTTTGTCTGTATGTTCCTATCTTT
GTCTGTCTGTCTCCCATCCCCCTCCCTCCCCCCCTCTCTCGTTCTCGGTC
TCGTTCTCGATTTTGTTCTCTTCATCTTCATCTCTCTTTCTCCTTCGGCA
GGCGCTGATGATCCACAAGGCGGTGATGGGCGTGTCGTTTCACCAACTGG
ACAAAATTTATCTTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7942:3245..4511-

>mRNA_H-paniculata_contig7942.15971.1 ID=mRNA_H-paniculata_contig7942.15971.1|Name=mRNA_H-paniculata_contig7942.15971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig7942:3245..4511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCCAATACAACACGGGCAAGCTACCTTACAACGGCTACACGCGA
CAAATGGATGAAGGCCAATACAACACGGGCAAGCTACCTTACAACGGCTA
CACGCGACAAATGGATGAAATTCAATAGGTGTCCTCCACATGGGATCAAA
CGCGGTAGTCTGGAATGTTCAGGAGCCCATGAACTTGATGTGCGCCAACA
AGGACACCAACTTGAACACGTTGGAGTTGAGAAACAGATGAAATTCAATA
GGTGTCCTCCACATGGGATCAAACGCGGTAGTCTGGAATGTTCAGGAGCC
CATGAACTTGATGTGCGCCAACAAGGACACCAACTTGAACACGTTGGAGT
TGAGAAACAGGCGCTGATGATCCACAAGGCGGTGATGGGCGTGTCGTTTC
ACCAACTGGACAAAATTTATCTTCCGGCGCTGATGATCCACAAGGCGGTG
ATGGGCGTGTCGTTTCACCAACTGGACAAAATTTATCTTCCG
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