mRNA_H-paniculata_contig7925.15954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7925.15954.1
Unique NamemRNA_H-paniculata_contig7925.15954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7925.15954.1 vs. uniprot
Match: D8LK34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK34_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.500e-15
Identity = 47/63 (74.60%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   43 GGDGAAIAAECDTLVGRLAGLLLDRTNPDVPDLQEAKVLSATSVGLGLLSSGLKKFARLSGRG 231
            GG      AECDTLVGRLAGLLLDRT PDVPDL EAKV+S  SVGLGLLSSGLKK  R+ G G
Sbjct:  881 GGSRTEHTAECDTLVGRLAGLLLDRTRPDVPDLYEAKVVSPASVGLGLLSSGLKKLGRMGGAG 943
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7925.15954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK34_ECTSI4.500e-1574.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7925contigH-paniculata_contig7925:222..3663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1278
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7925.15954.1prot_H-paniculata_contig7925.15954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7925 222..2879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.3374152-CDS-H-paniculata_contig7925:221..3681622930988.3374152-CDS-H-paniculata_contig7925:221..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7925 222..368 +
1691481540.094404-CDS-H-paniculata_contig7925:221..3681691481540.094404-CDS-H-paniculata_contig7925:221..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7925 222..368 +
1622930988.3560393-CDS-H-paniculata_contig7925:1858..19981622930988.3560393-CDS-H-paniculata_contig7925:1858..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7925 1859..1998 +
1691481540.1043193-CDS-H-paniculata_contig7925:1858..19981691481540.1043193-CDS-H-paniculata_contig7925:1858..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7925 1859..1998 +
1622930988.3732405-CDS-H-paniculata_contig7925:2674..28791622930988.3732405-CDS-H-paniculata_contig7925:2674..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7925 2675..2879 +
1691481540.113909-CDS-H-paniculata_contig7925:2674..28791691481540.113909-CDS-H-paniculata_contig7925:2674..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7925 2675..2879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.3921278-UTR-H-paniculata_contig7925:2879..36631622930988.3921278-UTR-H-paniculata_contig7925:2879..3663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7925 2880..3663 +
1691481540.1264734-UTR-H-paniculata_contig7925:2879..36631691481540.1264734-UTR-H-paniculata_contig7925:2879..3663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7925 2880..3663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7925.15954.1

>prot_H-paniculata_contig7925.15954.1 ID=prot_H-paniculata_contig7925.15954.1|Name=mRNA_H-paniculata_contig7925.15954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
AGDSQDTKKNAGVGGGDGAAIAAECDTLVGRLAGLLLDRTNPDVPDLQEA
KVLSATSVGLGLLSSGLKKFARLSGRGRAEGEGGRGGSGRNRTRSRPADR
PVLVIFVVGGFTPMELKEVNGVLRCCAASAEDVPEVILAGTTLLTPDVTY
EQVFSRPPAWQEK*
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mRNA from alignment at H-paniculata_contig7925:222..3663+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7925.15954.1 ID=mRNA_H-paniculata_contig7925.15954.1|Name=mRNA_H-paniculata_contig7925.15954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3442bp|location=Sequence derived from alignment at H-paniculata_contig7925:222..3663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTGACTCGCAAGACACTAAAAAAAACGCAGGAGTGGGTGGGGGGGA
TGGTGCCGCGATAGCAGCAGAGTGCGATACCTTGGTGGGACGATTGGCGG
GGCTTCTCCTCGACCGAACTAACCCGGACGTGCCCGACCTGCAGGAGGTT
TGTCCAAATGAAAGCATATAACATGATTTCAGCTAAATCATCTAATCGAA
TCAGAATATTTGCAATATAGCAAGCCTTTGAGAGTATTATCGTGTTACTG
GTTTTTTAGTTTTGGCGGGGTTCACTTCAAAGTTATGCACTCCATTTATT
TTCCTAGGCGCAGTGGTCGGTGTGTTGTTTGCGGATTGTTCATGTGTATG
TATATTCAAGTGAAAGCAGAATATCGTCTATTCAGTGGATATCTGATAGA
AACAGAATTGCAGGTCAACCTTGCGTTCGTATGTAGTATCATCTAACCGG
CTTCATAACTCGTTATGTCACCTGAAGTTTACGTTCTGTCGGGCGTATGG
TAGTACATGAACTGATAACAAGGTCGGGTATAGGCAGATGCGTGGGCTAC
CGACCCATGAAGTGAGTTGAACACATTCCGGCAATTCGTAGTGCGTGTTC
AAGATGAAGTGCACCACGTGTGACTCACAAATTACGGTCGTCTTCAACAG
TTAGGTATGAATGGACAGGCGGGAATATATTGCTATACACTTCGTTAGGC
CGACGCTCTACTCTGCATATGGAGTAGTTTTGCTTGCCTGAAGACGCAGC
TTCCAATCCCCCTCCGTCATGCGATCATCAGGTCGCCATAGAGTACGATT
TTGAGAGATTAAATATTTGTATGTACAATAGAGCATGATCCTAAAGCTTT
GTAGGAAGTAGTACATCGAAGTAAGCATGGCATAGTAAGGTAGTTACATC
CAAGTCCGGCGCAATTAATTCGTGAGGTTCAATTTTGCTTTCGATGCTTT
CAGTAGGTTCACCTCTACTAAAGTGATGACTGGTAAAAACGTGCGACATA
TATCACATGGATTTCGCGCCCATGTGGCGGGATAGGACAATACTTATTGT
ACTTGCTTTCGGCATAGGGTGTGCATGAGTTCGCATTCGTGTTTTGTGTT
CAGCCTTGAAATGAAAGTAGCCAAGGGTGTTCTTGGTAACGGTATTTCAA
AAATGAACAAATGGTTCGGTAAATGATTTCCTCGGTATAGCGTCGGTAAT
GGTGTTCGGCAAATCGGTAGTTCAGTCTTGAAATTAAATTAACCGTTCGT
ATTCGACAAGACACTTCTTGCGTTATTGTTGGTGGTGGCGGTGACGGTGT
TCGTTGCCGTTGCGGTACATACGCGCGCCACATGTCATTGTCCACATTTT
TTTTTGTTTTTCTTCGATATCTCCACCCAACCATGCGGGCCCGCTGTCCG
AAAATAGATACATGTTTCTCAAAGTAAACTACAAGCAACCATGGACACGA
CTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTT
GCCGTTGTCACTATTATCATCAAAATGGCCGTTGTTGTTCATGCTGACCT
TGCTGGCTATCCTCTTACATCCATCCGCCGTTGTATTTCCTCCTCCTCCG
CCTCCTCTTTCTCCTCTCTTTTTTTCTTCCTCGAAAGGCAAAGGTGCTGA
GCGCTACTTCTGTTGGACTAGGTCTGCTGTCGTCCGGCCTTAAAAAATTC
GCTCGCCTATCAGGTCGAGGAAGGGCAGAAGGGGAAGGAGGAAGGGGAGG
GAGTGGTCGGAATCGAACCCGGAGCCGGTGAGACGGTATCAAGTACTGAG
GCGATATCGGACCCGTCTTGTGTAACTGAATAGCGGTACGAAATTTCGCG
CAGGCTGTGGTTCAGTAGTCATACACCTGCATCGTGCATTTTATTGGGTC
AGTTGCCCTGCTCACAAAGTAAACTCGACCACAGTCGAGCGATTTTTTTT
TCCTTGGTAGTTTTTGGGCCGTCGTTGTCAACTGTTATTGTTATTGTTAT
TGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTG
TTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTT
ATTGTTATTGTTTTTCTGAATACCCTTTGCATTCTTTTTTCGGGCTTGTT
TTTCGAGCTCACTCTTGTTCTCAAAATTTAGGTTTTTTGTCAACAATTGG
CTTTATATATAATGGTTGATTTCCGACAGGATTTGTTTTGCACGTGATTT
TGACGTGATGATATTTTTTTGTTTCTTCAAATAGAATTTCACTTTCTTGC
TTGTTTGCTCACCGAAGTTTACCCAAGAATCGACTTGTTGTGCCAATAAT
AGTTTGACATTGATTGATTCACCCGTCCACTCCCTCCTTCACTCATGCAC
CCCCCCACCCGCCCGATCTCGTCCTTATTTATTTATTTTTCTCGTTTTTT
TAGACCAGCAGATCGACCTGTTCTTGTGATTTTCGTGGTAGGCGGCTTCA
CGCCGATGGAGCTGAAAGAAGTCAACGGCGTGTTGCGCTGTTGCGCGGCG
TCTGCGGAAGACGTGCCGGAGGTGATCTTGGCGGGCACGACTTTGCTGAC
GCCCGATGTGACGTACGAACAGGTCTTCAGCCGGCCGCCGGCATGGCAAG
AAAAGTGACCTAACTGCGCGTGGGAGTCTCGAATCTTGCCACGCCTCGCC
CCCCTGTGCCAGTCCTTTTCACTTGCTTCAAGCCTTTGGCCTTTGCGCCG
TGGTTAGGCATAGATAGGTCTCGACGGCTTCTGGCCTACGAAAACTTATT
TCACGGTTTTCTGTGTCTAATTTTGCTTCATCTGTCGTACGAGGCGAGAG
TATAAATTTAAGATCTAACAGAAAAATACCTGCGTGTATACCACATCGCC
GGTGGGTTGGGTATTCGTAGTGGGCACCGCAGGGACAACCACTAGCTGCC
CAAAACAACTGATTCGCCTGCACAAGGGAAGTTGAGTGCAGCTTTCGGGC
AGGAATTAAAATTCCTATCGATTCGGCGTGGATAGGGCATATTGGTTCAG
CGCCGTTGACGCGGCCAACAGTGGACAGGGACCATCAACCAATCTTAACA
TGACGAACTGTTCCAGATGTTTTCTATTGATTTTGCAAGGGTTTCTGGTG
CTCTTGTAAAGGGTTCTTATACATTCAAATATGCACTCGGATACACACCT
CCCCCACATACCGCCATTTTTGCACACTTGTATTTCTCACAGGTGATATA
TATTTTTGTTTTTGACCTCGTAATAGCGGCTTTACAGGTTGTTGTGTGTT
GTGAAAGACTTGGTGTATGTGTGAACCTATACGGGACAGGGTTCTCCGTG
GTTGGCCAGATTGTTCACGTCTGGCTTGATACCTGAAACAAACATTGTGC
ATCATCAGGACAATTACCGACATAGTACTGGGGGGTGACGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig7925:222..3663+

>mRNA_H-paniculata_contig7925.15954.1 ID=mRNA_H-paniculata_contig7925.15954.1|Name=mRNA_H-paniculata_contig7925.15954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig7925:222..3663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTGACTCGCAAGACACTAAAAAAAACGCAGGAGTGGGTGGGGGGGA
TGGTGCCGCGATAGCAGCAGAGTGCGATACCTTGGTGGGACGATTGGCGG
GGCTTCTCCTCGACCGAACTAACCCGGACGTGCCCGACCTGCAGGAGGCG
GGTGACTCGCAAGACACTAAAAAAAACGCAGGAGTGGGTGGGGGGGATGG
TGCCGCGATAGCAGCAGAGTGCGATACCTTGGTGGGACGATTGGCGGGGC
TTCTCCTCGACCGAACTAACCCGGACGTGCCCGACCTGCAGGAGGCAAAG
GTGCTGAGCGCTACTTCTGTTGGACTAGGTCTGCTGTCGTCCGGCCTTAA
AAAATTCGCTCGCCTATCAGGTCGAGGAAGGGCAGAAGGGGAAGGAGGAA
GGGGAGGGAGTGGTCGGAATCGAACCCGGAGCCGGCAAAGGTGCTGAGCG
CTACTTCTGTTGGACTAGGTCTGCTGTCGTCCGGCCTTAAAAAATTCGCT
CGCCTATCAGGTCGAGGAAGGGCAGAAGGGGAAGGAGGAAGGGGAGGGAG
TGGTCGGAATCGAACCCGGAGCCGACCAGCAGATCGACCTGTTCTTGTGA
TTTTCGTGGTAGGCGGCTTCACGCCGATGGAGCTGAAAGAAGTCAACGGC
GTGTTGCGCTGTTGCGCGGCGTCTGCGGAAGACGTGCCGGAGGTGATCTT
GGCGGGCACGACTTTGCTGACGCCCGATGTGACGTACGAACAGGTCTTCA
GCCGGCCGCCGGCATGGCAAGAAAAGTGAACCAGCAGATCGACCTGTTCT
TGTGATTTTCGTGGTAGGCGGCTTCACGCCGATGGAGCTGAAAGAAGTCA
ACGGCGTGTTGCGCTGTTGCGCGGCGTCTGCGGAAGACGTGCCGGAGGTG
ATCTTGGCGGGCACGACTTTGCTGACGCCCGATGTGACGTACGAACAGGT
CTTCAGCCGGCCGCCGGCATGGCAAGAAAAGTGA
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