mRNA_H-paniculata_contig7924.15953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7924.15953.1
Unique NamemRNA_H-paniculata_contig7924.15953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7924.15953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7924contigH-paniculata_contig7924:292..2134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.0925164-CDS-H-paniculata_contig7924:291..3541622930988.0925164-CDS-H-paniculata_contig7924:291..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7924 292..354 -
1691481540.0054584-CDS-H-paniculata_contig7924:291..3541691481540.0054584-CDS-H-paniculata_contig7924:291..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7924 292..354 -
1622930988.1091468-CDS-H-paniculata_contig7924:1921..21341622930988.1091468-CDS-H-paniculata_contig7924:1921..2134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7924 1922..2134 -
1691481540.0153697-CDS-H-paniculata_contig7924:1921..21341691481540.0153697-CDS-H-paniculata_contig7924:1921..2134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7924 1922..2134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7924.15953.1prot_H-paniculata_contig7924.15953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7924 292..2134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7924.15953.1

>prot_H-paniculata_contig7924.15953.1 ID=prot_H-paniculata_contig7924.15953.1|Name=mRNA_H-paniculata_contig7924.15953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
PAPTLLVHPSHPRTSHRNTVIIHLQCKHFAGRRLGQQLMSKGCQDATATT
STKVPTDWLLEAQKRLVWAILMQRSNRTAQTIVTPSAVYFC*
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mRNA from alignment at H-paniculata_contig7924:292..2134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7924.15953.1 ID=mRNA_H-paniculata_contig7924.15953.1|Name=mRNA_H-paniculata_contig7924.15953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1843bp|location=Sequence derived from alignment at H-paniculata_contig7924:292..2134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCCCCTACTCTACTTGTACACCCCTCCCACCCGCGCACTAGTCACCG
CAACACTGTTATTATACATCTTCAGTGTAAACACTTTGCTGGACGGAGGC
TTGGTCAACAATTGATGTCAAAGGGCTGCCAGGACGCGACTGCGACCACG
TCAACGAAAGTTCCGACGGACTGGCTCTTGGAGGCGCAGAAGCGGCTAGT
TTGGGCAATACTGGTGGGCTGATTGATGTTCGATGCTGATTTGGTGTTGA
TTCGCCCTAGTAGAGCTGCCCAATTAAGAATCAATGTTGTCGAGCACGTT
TTCCAAAGCATCGTTGAGCCTCTTTCTCATTCTATTTGTGTAGGCGATCA
GCAAGCAGACGCAGTGCAAGTACCTGACTATGCTCCACGGAAGCTGTGAC
TATGTAGGTCGGCAATTGAACCGCCCTCCGTCGACCCTGATGACGCTGCT
GTGACATACTGGAATTCACGTCAATCGACACCAGTAATTTTGACCAACAG
TACTTCTCTTCTATCTTGAAGGCCGCTTGTTATAGCCGTGAAAAAACGCT
TCTCTGAAAACAATTCGGGCATTTTTTTGCTGTCAAATTTCCTGAACGGC
TTCGGTATAGAGCCATTTTTTGGGTCCTTTTCCATCTCACTTGGTTTTTT
AGACAGTTTCCTATGAGATCAAAGCTCGCAGGAATATGGATTTCACCACC
CACCCCTTCCCAATACACACTGAGCCCGCTATGAATATGATGGATATAGG
CGATCTGGGTGTAGGTGATGTGGATACAACATCTGTAGGTGATGGCGACG
AGGAGATCATGGCTGCGGGGCAACCCATGGTCCACCGAATTCATGCGGCA
AAATTGGCAGCAAAAGCGTGCGTAGATGATACGCAGGCCGAAGAGGGGCA
GCGGAGGATAGTTGGGAAGTGGATGGGATGTTCGTCGATGTTAACCCTAG
GGTCAATTACGGTACTTGTTGTTGTTGCTGTTGCTGTTGGTATGGGTGTG
TGTGAGTGACTGAACGGAAGGGCACGCTGCGAGCGTGGATCCTATTTCAA
ATTAATGCAAATGATGACCACTATCGCGCAGGCCAGAGAGACGGAACACA
GAGACGTAACACTGTATTGCCACGCCGGCGCTTGGATGTACAGATCCCCA
AAAATATTCTCGGCCTATAACAAACAGTTTGGAGAACTGTTTTCGTCGAA
AAACCTCTCAGGAAAGGGTTGACTCCCCGAATTATTTTCAGAGGTTTTTT
AGTGACTGACTGTAACAAGCGGACTAAGCTTGTCTCCAGTAGAGAGTACA
AGAACCCTACTTCGCCATCAAAATCTTGAGGCGTTTACTGCTGAGTCTTA
AAGCCAGTTCGTGGAGGGGTCGGGCAGTACCGTCTAGTAAAACCAAGTGA
AACGAAACCCGGTGGGTTTGACGACTAACTGGGGATAAACTCTACTGGAA
TGGAGCCATACAGAGTAAATCTCGTTTTTTCTGATTGTCTTGGTTCGTGC
CCACCCCCTTCACGAAGCTAGCACTAGGGCGTTGCTAGACCAGGGAGCGG
CGAAGCATTTGAGCGATTGAAGGTTCGGGTTCAAGGTCGGGATTCGCAGC
CCACCATCTCGCAAACCCAAGTAAGCAACACAACAGAGAACCACGCCCTT
TATGGCCGCTAACTTGGCTTTTTGTAATCTCAGAGCAGAGAGAGATATGT
GGAGCGATAAATAGCCAAGTGACGAAGCGCCCTTCACTCGTCTCCTTGTT
GCCTCCTGTCTGTGGTTCTTGGTCGCTCAGATGCAACGGAGCAATCGAAC
CGCGCAAACCATCGTCACCCCGAGTGCCGTATATTTCTGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7924:292..2134-

>mRNA_H-paniculata_contig7924.15953.1 ID=mRNA_H-paniculata_contig7924.15953.1|Name=mRNA_H-paniculata_contig7924.15953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig7924:292..2134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCCCCTACTCTACTTGTACACCCCTCCCACCCGCGCACTAGTCACCG
CAACACTGTTATTATACATCTTCAGTGTAAACACTTTGCTGGACGGAGGC
TTGGTCAACAATTGATGTCAAAGGGCTGCCAGGACGCGACTGCGACCACG
TCAACGAAAGTTCCGACGGACTGGCTCTTGGAGGCGCAGAAGCGGCTAGT
TTGGGCAATACTGCCTGCCCCTACTCTACTTGTACACCCCTCCCACCCGC
GCACTAGTCACCGCAACACTGTTATTATACATCTTCAGTGTAAACACTTT
GCTGGACGGAGGCTTGGTCAACAATTGATGTCAAAGGGCTGCCAGGACGC
GACTGCGACCACGTCAACGAAAGTTCCGACGGACTGGCTCTTGGAGGCGC
AGAAGCGGCTAGTTTGGGCAATACTGATGCAACGGAGCAATCGAACCGCG
CAAACCATCGTCACCCCGAGTGCCGTATATTTCTGTTAAATGCAACGGAG
CAATCGAACCGCGCAAACCATCGTCACCCCGAGTGCCGTATATTTCTGTT
AA
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