mRNA_H-paniculata_contig7920.15949.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7920.15949.1
Unique NamemRNA_H-paniculata_contig7920.15949.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: A0A6H5JCU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.670e-42
Identity = 194/626 (30.99%), Postives = 264/626 (42.17%), Query Frame = 2 
Query:  110 MPCVLVSCCGLPAAGKTSFCRSIV------------------------NCGAPLHQSPSPSTPSYGVHVTHICFDKYIDLALQRARQPQHS-----PAQRRAVGPKIGGLPD------KAENSNTGEK-------QPDEVARDPQYSTR----RDGSTLHCDNNNGAVDEIQER------------EEEAAWWHEGRRDAMAAVEALA--ARNPALAA---AVVQGQEVREEAQTNGNDTTRTGPCGWGSAKEEYVRCEENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVV------QSQKDGNV------------DSAH--------------------DGCAGG--SQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMREAAKILAEQGARSGLTRDMLRRVMNACAVSRKATLHRARATEKVKTVYYVGGNGSPSFDCSDSPDARRGDSERDNGNVASFSDSGVSTALKSCSSTKSVFDTHGRSSGSGESMARGALPLDAFVVEFERAIRGIDELNASLRRGLVEAVKGVHRS 1678
            M CVLVSCCGLPAAGKT+FCRSI                         +CG  ++  P        + V+H+CFD+YI+ A +  RQ   S     P+    +   +    D      +     +GEK       Q     RD + ST      + +  +   + GA +                 E+ A WWH+GRR AMA +EALA  A + A A    AV+ G  V             +  C    A                 ++ + M             RE  CGYAQVFFPT   +A++R+  R   VSEAVI KMA N+QPPD  RF WERHTVVV      +S ++G              D+A+                    D  AG   S+  EG+T  V     +   FW V+A AA +   PL +   +    K ADREAT ASV+H+ DL +REA K +AE  A +GL+RD+ R VM AC+ SRK  + RAR+T   ++V     N S +                  GNVA   DS      + C++            G G   +      D F  EFE A+  ID +  S++  LV A +GV R+
Sbjct:    1 MRCVLVSCCGLPAAGKTTFCRSIAASNRFPTQGATDTATDTRVERDSSDCGPIINGGPQ-------IWVSHVCFDEYINSAHRPRRQHSRSSNDDEPSFNARISSHLSPASDVHHKKDQGAGVESGEKAELNLGRQAGADERDMKESTTYPQTHEATGTYAVESQGATETTPHTSLAEPPGASEGGEDGARWWHDGRRAAMAELEALAKGAESGARAGPKTAVISGGTV-------------SSACAMPPA-----------------MLSEEM-------------REDGCGYAQVFFPTDVEIAVKRNTARGTSVSEAVIRKMAANIQPPDPKRFKWERHTVVVSSPSGSRSPQEGTEMVPPLKPHRTPPDTANLYRNPPRGSSRAKILSPSGGDFDAGDNVSKVAEGSTTVVH----SQRRFWCVIATAAGEDPKPLASDSASRVLDKEADREATKASVMHQYDLHLREAVKRVAEAAAGAGLSRDVHRVVMKACSASRKHAIRRARSTADQRSVSTS--NQSTA------------------GNVAVCHDS-----YQGCTA----------GGGDGCPTSGSLSDTDPFAREFENALGTID-VAESVKVQLVVAAEGVARN 536
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: A0A6P8HCU4_ACTTE (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HCU4_ACTTE)

HSP 1 Score: 94.0 bits (232), Expect = 3.920e-17
Identity = 60/209 (28.71%), Postives = 99/209 (47.37%), Query Frame = 2 
Query:  719 VVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAGGSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMREAAKILAEQGARSGLTRDMLRRVMNACAVSRKATLHRARATEKV 1345
            ++LVDDNM++RSMRHE   LAR+Y  GY QVF       A++R+++R  P+    IV MA  L+PP  +++ WE +++V+ +  DG                             ++    ++A AA +PV PLP     + E K   R A   S++H+ D  +R+       +    G T+  +R +     + RK  L + +  E +
Sbjct:  158 ILLVDDNMYYRSMRHEYFLLARKYGLGYMQVFIECPVNTALDRNSQRGNPIDRNTIVTMATKLEPPSPDKYPWEEYSMVLDANDDGTNSY-------------------------LTRLLSLMAEAALNPVQPLPE---ENKEEKEEARAANLTSMMHQADQTLRKVITDKMAKAKGDGFTKQEMRSLAEELNLRRKTFLDKLKTEESL 338
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: UPI0018D747F4 (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D747F4)

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-16
Identity = 107/415 (25.78%), Postives = 168/415 (40.48%), Query Frame = 2 
Query:  122 LVSCCGLPAAGKTSFC------RSIVNCGAPLHQSPSPSTPSYGVHVTHICFDKYIDLALQRARQPQHSPAQRRAVGPKIGGLPDKAENSNTGEKQPDEVAR--DPQYSTRRDGSTLHCDNNNGAVDEIQEREEEAAWWHEGRRDAMAAVEALAARNPALAAAVVQGQEVREEAQTNGNDTTRTGPCGWGSAKEEYVRCEENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAGGSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMREAAKILAEQGARSGL-TRDMLRRVMNACAVSRKATLHRARATE 1339
            LV  CGLP AGKTS        +SI +     + S +      GV   H+C+D  I   L+   +   SP    +        P KA           E+ R  D   +  +   TL        VDE+Q+  +                                G+EV  +  T   D          + KE+  R      S  V+ +DDNM++RSMRHE  ++A++Y  G+ QV+      VA+ R+++R+  + E  I +MA  ++ PD    SWE+ ++ + S+     DS  +           TT         +S+ W+++  A  DPV PL    + +AE K A R A  +S+LH+ D  +R+            GL TR  L+ + +     R+A L + R  E
Sbjct:   13 LVLLCGLPGAGKTSLAVALMKKKSIGHHHLAKNSSLASVDECPGVAACHLCYDDVIPRQLEMQMEGGESPYFNESTNQSSSVSPWKAYRQ--------EILRCVDGILARLKSNKTLDATT---VVDELQDISQ-------------------------------CGREVWSKILTLIQDQIN-------AKKEQNPR----RTSSVVLFIDDNMYYRSMRHEYYQVAKKYSVGFCQVYLRCNTEVAVARNSQRRHGIPEETIRRMASRIEAPDRQVASWEKQSIHIDSE-----DSEKE-----------TT---------LSAIWDLITKALLDPVLPL---EVVNAEEKEASRAACASSILHQADQSLRKCVTEAVTSAKDGGLLTRAELKALGSKVNNVRQAVLQKIRDGE 346
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: A0A0B6YNA6_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YNA6_9EUPU)

HSP 1 Score: 84.7 bits (208), Expect = 3.020e-16
Identity = 38/99 (38.38%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:  695 EENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRK--FPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVD 985
            E   ++ F+++VDDNM+FRSMR+E  +LA+ Y+ GY Q+    +   A+ER+  R+    V E +I+KM    +PPD  ++ WE ++++V S++D N+D
Sbjct:    2 ERQNKTTFLLVVDDNMYFRSMRYEYYKLAKRYQTGYCQIQVKCSIEKAMERNKGRENIHQVPEEIILKMLDKFEPPDPEKYHWEANSIIVSSEEDVNID 100
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: A0A8B7Y2V4_ACAPL (L-seryl-tRNA(Sec) kinase-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y2V4_ACAPL)

HSP 1 Score: 87.8 bits (216), Expect = 6.830e-15
Identity = 67/233 (28.76%), Postives = 109/233 (46.78%), Query Frame = 2 
Query:  653 PCGWGSAKEEYVRCEENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAGGSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMR----EAAKILAEQGARSGLTRDMLRRVMNACAVSRKATLHRARATE 1339
            P  W   K      +    S  V+L+DDNM +RSMR+E  +LAR+Y   + QV+      VA+ R+++R+  V E  + KMA  ++ PD    SWE+HT+ ++++                  +E          A +S+ W ++A A  DPV P+    + +AE + A R    AS +H+ D  +R    EA     E G+   L++  LR + +     R+  L + R  E
Sbjct:  164 PTSWAEGK------QVQPASSVVLLIDDNMFYRSMRYEYYQLARKYNTSFCQVYLQCNTEVALARNSQRRNVVPEETVRKMANRMEVPDRQVASWEKHTLCIEAK-----------------GLENE--------ATLSTVWALIAEALLDPVLPM---EVENAEEREASRVVCAASAIHQADQSLRRCVAEAVTAAKEGGS---LSKAELRNLGSKLNDVRQTVLQKIRTRE 359
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: G1KTY6_ANOCA (Phosphoseryl-tRNA kinase n=1 Tax=Anolis carolinensis TaxID=28377 RepID=G1KTY6_ANOCA)

HSP 1 Score: 85.5 bits (210), Expect = 2.690e-14
Identity = 58/182 (31.87%), Postives = 96/182 (52.75%), Query Frame = 2 
Query:  668 SAKEEYVRCEENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAGGSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMR 1213
            SA  +Y+    +   ++ VL DDN ++RSMR+EV +LAR+Y  G+ Q+F      V +ER+++RK P+ E  I  MAQ ++ P+  +++WE H+++++S             AG   A+E   Q +           ++++AA E+PV PL      + E K  DR     S LH+ D  +R
Sbjct:  129 SASCQYLIDFTSPSPIYFVL-DDNFYYRSMRYEVYQLARQYTLGFCQLFLDCQVEVCLERNSQRKQPLPEETIYAMAQKIECPNPEKYTWEHHSLILKS-------------AG--SALEDNLQML-----------DLLSAALENPVKPLE----ENTELKEIDRAICATSALHQTDQAIR 279
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: A0A085MII7_9BILA (Transmembrane protein 98 n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MII7_9BILA)

HSP 1 Score: 85.1 bits (209), Expect = 1.720e-13
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  710 SVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRK--FPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKD 973
            S  +VL+DDNMH RSMRH    LARE K G+ Q+   T   VA+ R+A R     V E VI  MA+ +Q PD+NRF WER+T+++   +D
Sbjct:  321 SRIIVLIDDNMHLRSMRHSFYLLARERKIGFGQIAVQTDVDVAVRRNALRTGGIRVDEEVIFNMAEKMQMPDANRFHWERNTLLLNELRD 410
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: UPI001BB15A12 (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB15A12)

HSP 1 Score: 81.6 bits (200), Expect = 5.530e-13
Identity = 35/98 (35.71%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  680 EYVRCEENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKD 973
            E V+  + E+ V ++L+DDNM +RSMR+ + +LAR+Y  G+ Q+ F  +  VAI+R+ RRK  + E  I+ MA  ++ PD+++  WE +++++++ ++
Sbjct:  148 EAVQGNDKERCV-IILIDDNMFYRSMRYNLYQLARKYSTGFCQIGFECSTDVAIKRNVRRKAKIPEETIITMATKIEQPDASKAPWEANSILIEADEE 244
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: UPI001C7151B1 (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C7151B1)

HSP 1 Score: 80.9 bits (198), Expect = 6.520e-13
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = 2 
Query:  695 EENEQSVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAGGSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMR 1213
            +++  + +V+L+DDN ++RSMR+E  +LAR++  G+ Q +   A  VAI ++  R   V    I  MA+NLQPP  +  +WE +TVV+ S+     D                              W++V  + E PVP L    +  AE     R   + SV H+ DL +R
Sbjct:  110 KQDANAKYVILLDDNFYYRSMRYEYYQLARKHNVGFCQCYIECATEVAIHQNQSRDIQVPTVAIEAMAKNLQPPHPHEQTWECNTVVISSESSARTDIV----------------------------WDIVEKSLESPVPSLENRDVEIAEA----RLRCSLSVAHQADLILR 250
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BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Match: UPI0018A7AAC0 (LOW QUALITY PROTEIN: L-seryl-tRNA(Sec) kinase-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI0018A7AAC0)

HSP 1 Score: 80.9 bits (198), Expect = 7.220e-13
Identity = 52/175 (29.71%), Postives = 80/175 (45.71%), Query Frame = 2 
Query:  716 FVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARRKFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAGGSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSADREATTASVLHRLDLDMREAAKILAEQ 1240
            +V+L+DDN ++RSMR+E  +LAR++  G+ Q +      +AI ++  R   V  A I  MA+NLQPP      WE +TVV+ S+     D+                             W+++  + E PV PL    L  AE     R   + SV H+ DL +R     L ++
Sbjct:  119 YVILLDDNFYYRSMRYEYFQLARKHNIGFCQCYLQCTTEIAIHQNLSRDIQVPTAAIETMAKNLQPPQPQELMWEFNTVVISSKSPDTTDA----------------------------IWDIIEKSLELPVQPLVNRDLEIAEA----RLRCSLSVAHQADLILRSLVGTLIKE 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7920.15949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU0_9PHAE2.670e-4230.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P8HCU4_ACTTE3.920e-1728.71L-seryl-tRNA(Sec) kinase-like n=1 Tax=Actinia tene... [more]
UPI0018D747F41.300e-1625.78L-seryl-tRNA(Sec) kinase-like n=1 Tax=Patiria mini... [more]
A0A0B6YNA6_9EUPU3.020e-1638.38Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A8B7Y2V4_ACAPL6.830e-1528.76L-seryl-tRNA(Sec) kinase-like isoform X1 n=2 Tax=A... [more]
G1KTY6_ANOCA2.690e-1431.87Phosphoseryl-tRNA kinase n=1 Tax=Anolis carolinens... [more]
A0A085MII7_9BILA1.720e-1347.78Transmembrane protein 98 n=2 Tax=Trichuris suis Ta... [more]
UPI001BB15A125.530e-1335.71L-seryl-tRNA(Sec) kinase-like n=1 Tax=Lytechinus v... [more]
UPI001C7151B16.520e-1330.06L-seryl-tRNA(Sec) kinase-like n=1 Tax=Penaeus japo... [more]
UPI0018A7AAC07.220e-1329.71LOW QUALITY PROTEIN: L-seryl-tRNA(Sec) kinase-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7920contigH-paniculata_contig7920:1309..5511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.0
Seed ortholog evalue7.3e-15
Seed eggNOG ortholog7668.SPU_026689-tr
Preferred namePSTK
KEGG rclassRC00002,RC00017
KEGG koko:K10837
KEGG ReactionR08223
KEGG Pathwayko00450,ko00970,map00450,map00970
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001514,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0098620,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112
EggNOG free text desc.selenocysteine incorporation
EggNOG OGs38G32@33154,3BG21@33208,3CUPG@33213,COG4088@1,KOG4622@2759
Ec32 ortholog descriptionL-seryl-tRNA(Sec) kinase
Ec32 orthologEc-03_001030.1
EC2.7.1.164
COG Functional cat.F
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size1819
Cds size1575
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7920.15949.1prot_H-paniculata_contig7920.15949.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7920 1444..4950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.623573-UTR-H-paniculata_contig7920:1308..14431622930987.623573-UTR-H-paniculata_contig7920:1308..1443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7920 1309..1443 -
1691481539.846951-UTR-H-paniculata_contig7920:1308..14431691481539.846951-UTR-H-paniculata_contig7920:1308..1443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7920 1309..1443 -
1622930987.7332351-UTR-H-paniculata_contig7920:4950..49531622930987.7332351-UTR-H-paniculata_contig7920:4950..4953Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7920 4951..4953 -
1691481539.905561-UTR-H-paniculata_contig7920:4950..49531691481539.905561-UTR-H-paniculata_contig7920:4950..4953Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7920 4951..4953 -
1622930987.7587273-UTR-H-paniculata_contig7920:5405..55111622930987.7587273-UTR-H-paniculata_contig7920:5405..5511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7920 5406..5511 -
1691481539.9131553-UTR-H-paniculata_contig7920:5405..55111691481539.9131553-UTR-H-paniculata_contig7920:5405..5511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7920 5406..5511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.6373355-CDS-H-paniculata_contig7920:1443..19111622930987.6373355-CDS-H-paniculata_contig7920:1443..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 1444..1911 -
1691481539.8613677-CDS-H-paniculata_contig7920:1443..19111691481539.8613677-CDS-H-paniculata_contig7920:1443..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 1444..1911 -
1622930987.6500094-CDS-H-paniculata_contig7920:2280..23431622930987.6500094-CDS-H-paniculata_contig7920:2280..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 2281..2343 -
1691481539.8726273-CDS-H-paniculata_contig7920:2280..23431691481539.8726273-CDS-H-paniculata_contig7920:2280..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 2281..2343 -
1622930987.663347-CDS-H-paniculata_contig7920:2763..30361622930987.663347-CDS-H-paniculata_contig7920:2763..3036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 2764..3036 -
1691481539.881619-CDS-H-paniculata_contig7920:2763..30361691481539.881619-CDS-H-paniculata_contig7920:2763..3036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 2764..3036 -
1622930987.6868355-CDS-H-paniculata_contig7920:3274..33661622930987.6868355-CDS-H-paniculata_contig7920:3274..3366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 3275..3366 -
1691481539.8898664-CDS-H-paniculata_contig7920:3274..33661691481539.8898664-CDS-H-paniculata_contig7920:3274..3366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 3275..3366 -
1622930987.7118464-CDS-H-paniculata_contig7920:4271..49501622930987.7118464-CDS-H-paniculata_contig7920:4271..4950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 4272..4950 -
1691481539.897745-CDS-H-paniculata_contig7920:4271..49501691481539.897745-CDS-H-paniculata_contig7920:4271..4950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7920 4272..4950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7920.15949.1

>prot_H-paniculata_contig7920.15949.1 ID=prot_H-paniculata_contig7920.15949.1|Name=mRNA_H-paniculata_contig7920.15949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=525bp
MPCVLVSCCGLPAAGKTSFCRSIVNCGAPLHQSPSPSTPSYGVHVTHICF
DKYIDLALQRARQPQHSPAQRRAVGPKIGGLPDKAENSNTGEKQPDEVAR
DPQYSTRRDGSTLHCDNNNGAVDEIQEREEEAAWWHEGRRDAMAAVEALA
ARNPALAAAVVQGQEVREEAQTNGNDTTRTGPCGWGSAKEEYVRCEENEQ
SVFVVLVDDNMHFRSMRHEVLRLAREYKCGYAQVFFPTAAGVAIERDARR
KFPVSEAVIVKMAQNLQPPDSNRFSWERHTVVVQSQKDGNVDSAHDGCAG
GSQAVEGTTQTVGGWGAAISSFWEVVAAAAEDPVPPLPTAHLTSAECKSA
DREATTASVLHRLDLDMREAAKILAEQGARSGLTRDMLRRVMNACAVSRK
ATLHRARATEKVKTVYYVGGNGSPSFDCSDSPDARRGDSERDNGNVASFS
DSGVSTALKSCSSTKSVFDTHGRSSGSGESMARGALPLDAFVVEFERAIR
GIDELNASLRRGLVEAVKGVHRSR*
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mRNA from alignment at H-paniculata_contig7920:1309..5511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7920.15949.1 ID=mRNA_H-paniculata_contig7920.15949.1|Name=mRNA_H-paniculata_contig7920.15949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4203bp|location=Sequence derived from alignment at H-paniculata_contig7920:1309..5511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTACAAGACAGTATAGTGTAGCTGTGTTCATGGCACTGAAAGGGGAC
ATGTAGGGCATAATTATGTGATCGCTAAAAAAAAAGTATTGCTGTGCCAT
AATCAGGTGAGTGATATACCAGGTGACAATTTTGGACAGGTATACTCGTG
GTACCGTTTCATCTCTTTTTAAAACCGGCAATACTGTACTGTTTCTGTTT
AACAGAACGAGGCCATATCTACATCACAAGTTAGACATTATAGCAAACCT
GGATCTTCAGCTCTTGCCAAATAAAACGTTTAAAACGCCGCAAAAGTAGC
GTCTGGCTCGTGCAGGGTTGCAATCTAACTTCGTACTATTGTTTTCAGCG
GATCATTCAATATTGGACACTTCGCGCGCACATTACTTGTTACGGTTTTA
CCTGCTGTGTTGTAAGGCGTGGCGTAGACTTGCATTTTGTATTGGGTCTT
GTTGGTTTGTTGTTGGCGGGGCTCATTTAAATAGTGCGCGTGCCCACCCA
AGGGAAGCACCCACCACGTACCCTATTCCCACCACCTGTGCTCTTGCTTT
CCCTTCAGAGCATGCCCTGTGTGTTGGTGTCCTGCTGCGGGCTACCCGCA
GCTGGCAAGACGTCCTTCTGCCGTAGCATCGTGAATTGCGGCGCACCTCT
GCATCAATCTCCTTCACCGTCAACGCCTAGTTATGGGGTCCACGTTACTC
ACATATGCTTCGACAAGTACATTGACCTGGCTCTCCAGCGTGCGCGACAA
CCACAACACTCTCCTGCTCAACGACGCGCCGTAGGACCGAAAATCGGCGG
GCTCCCTGATAAAGCCGAAAATAGCAACACCGGAGAGAAGCAACCAGACG
AAGTCGCCAGAGATCCCCAATATTCTACAAGGAGGGACGGCAGTACCTTG
CATTGTGACAACAACAATGGCGCGGTCGATGAGATACAAGAAAGGGAGGA
AGAGGCTGCTTGGTGGCACGAGGGTCGCCGGGATGCCATGGCCGCTGTCG
AGGCGCTCGCGGCAAGGAACCCAGCGCTCGCGGCGGCGGTGGTGCAAGGG
CAAGAAGTTCGAGAAGAGGCACAAACAAATGGAAACGACACTACGAGGAC
GGGGCCTTGTGGATGGGGGTCGGCTAAGGAGGAGTATGTGCGCTGTGAAG
AGAACGAACAGTCGGTGTTTGTCGTGCTTGTTGATGACAACATGCACTTT
AGGAGCATGAGGCACGAGGTGCTACGATTGGCTCGCGAATGTGAGCGGGG
TCGGTGTGCACTTTCGATGCTTTGCTCTGCGCAAGCCCTGTCTACCGCGT
TTTTCTCGTTCGACAGCATTTTGCAGTTCTTTGGGAACAAACTTGACCAG
AGGGTGCCTTTTCGGGACATTGAGGCACCAAGTGCAAGGCCCCGTGTTGT
AGTAACGTCGTCCGAGTTTATACAAGATGTTTGAGGTTGACGAGTTGGCT
GAACTCCACACAGCGCATTAAGACTTTTCCAACCCCTCCTCAACATCAAA
ACCTGACATAAAATTGGCAAAGTTGTGCAAGATACCCTCGTAACCGATCT
GTGGCGGATCACGCGCGCAGGTGGAAATTCCGCTGGAAAATATATATATA
TTGCTGTCAGAAAGAGTTCCGCCCATCGTTTTTTGTTTGGTAACCTCAAA
ATACGCTTCACTATTTTTGAACACACAGAGAGCGAACCACGAAAAATTCA
AGATCTCTGCAAATCTCTCAAGCACAGCTACCCGCTCGCAGAAAACCCAC
GTGTTCTCTACTACGTACAAGCTAAAATGATGGCCTAGAGAAATACAGTA
CTGCTGGCTGTCATGTTACGCACGATGTGAGAAGCTACAAGATGAACGTT
TTTTTTTTTTTTTTAACCCCCGGAAGGTCGAGGCAAAAACCTTTTCCGCT
GCTTCCACTCTCGGAAGATTACTGAGTATCTGCATTTCCTTTAATGGATC
AAAGTTATTTGTTCCTCTGCGGTGTAGGCGCCACCCCGGTTCGGCGAAAG
ATGAACGTTTTCTGGCCTGAAGACACCATACCTGCCCGCCACAACCTGGC
GGGTATTTTAGAATGTAATCCTTCTGATTTTGTCTCTGTTACCTGCTCCA
TTCCTCCTTTGCGGTGCTTGCACTTACTCCCGCATGATTCTGCAGACAAG
TGCGGCTATGCCCAGGTCTTCTTTCCAACAGCCGCAGGTGTCGCGATCGA
GAGGGATGCAAGACGGAAGTTCCCTGTCTCAGAGGCGGTGAGTTTTCCGG
TGTAACGGTAGTACTCTTTTTAAACTCAATTATTGCTGTCTCTAGTAGCA
ACACAAGCTTCTGCACGCGAGGCGCTGACAAGGGCGACAGTTCAGACAAA
CTATCATTAGTAGATCACGACCAAAAGGACTTCGTAACCGGTCCGGGACA
TTCAGAGAGACTTTAAACGTATCCACAAATAGTGAAAAATCACTATTCCT
TGTACTCGCGTCCTGAATCTCGCAGGTAATAGTTAAGATGGCGCAAAATC
TCCAGCCGCCGGACTCCAATCGCTTTTCCTGGGAACGCCATACCGTCGTC
GTCCAATCGCAAAAAGATGGCAATGTGGACAGTGCTCACGATGGATGCGC
GGGGGGTTCACAAGCCGTGGAAGGCACTACTCAAACGGTGGGGGGTTGGG
GAGCGGCGATATCATCTTTCTGGGAAGTGGTTGCAGCTGCGGCTGAGGAC
CCTGTGCCTCCGTTACCCACCGCTCATTTAACGAGTGCAGAGTGCAAGGC
GAGAATTGAGCAGTTGGACTCCTTGCTGCCTGTGCTTCCTTGCTCATCGC
AACCCTAAACTTGGCATGTCGGCAATGACGAAAATGCCTCGATTTTTCTA
CATGCACTAGGGTTAAAGGGGATATTCTGTACATGACAAGCTTAATGTGT
TGTTGTGGTTCCTTCGAGGGCGCTATGATTTTTTTACCTGCGGGAAAGTT
TGGCAGAGGCAATCAGTCCGACGAGAGTCGGAATATCGATATTCCACATG
CACAACGAGACGGTTCGTTAAACATCGTGATTTTACATGACCGGTTTCGA
CGGGTTGTCCCCGGAGAGACGCTTGTGCTCGGATATCAGCCTTACCCCTG
TTATCTTAGCGCTCATTTACGCCCGCGTGCTATTTCATTTCGTTCTGCGG
GTGTACATGGTACCGCAGAGTGCGGATCGGGAAGCAACGACCGCGAGCGT
TCTACACCGGCTTGATCTTGACATGCGCGAGGTATGAGCTCGTATTGTTG
AGCATTTTGTTCTTGCACTCCTGTGCGCTGTGTTCCCACGTTGTTACGAT
ACATGTTCTATTTGGTGATCTCGTGATGTTGCTGAATCGGTGCTATTGTC
AGTCTCGACAGCAGTAAGGTTTCGTAAGCGTATGCGCTAGCAATCGAAGA
TGATAAAATTGTGCCCTACCCAAACCGTAGTCACAAATGGTGTATATAGT
TTGTTGACAATAAAAAGCTCTACACACGGGCGATAAAAAATACCAGGATT
CGTTACTTGTTTTTGTCTTTGGTACACACCACTACCAATAAGAACTATTA
TATACCCAACGTAATTGGCGCGTCGTGATTCGCTTCTTCTTGCCTCTCAG
GCGGCGAAAATTCTGGCTGAGCAAGGTGCACGCTCTGGTCTCACCCGCGA
CATGCTCCGAAGGGTTATGAACGCCTGTGCCGTCTCTAGAAAAGCTACGT
TACACCGAGCAAGGGCAACTGAAAAAGTAAAGACGGTATATTACGTTGGT
GGGAATGGCTCCCCTAGTTTTGACTGCAGCGACTCACCAGACGCACGCCG
TGGTGATAGTGAGAGAGATAACGGTAACGTTGCCTCTTTCAGCGATAGTG
GCGTTAGCACAGCACTAAAATCGTGCTCGTCCACGAAAAGTGTTTTCGAT
ACACATGGACGTAGCAGTGGAAGCGGGGAGAGCATGGCACGAGGAGCTCT
CCCGCTTGACGCATTTGTGGTCGAATTCGAGCGAGCTATCCGCGGTATTG
ATGAGCTAAATGCTTCCTTGAGAAGAGGCCTGGTTGAGGCGGTGAAAGGG
GTGCACCGATCACGGTGAACAAGATATTGCACGGAATTGATTCATCATCT
GCTCCCATGTATAGCATCAGCGGTCTGAATTTCTGCCAAGTGTCAAAGGT
GGCAGCGTGATGGCCTTAAAAATACACAACAATAAAGATAAATCTCCACC
CTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7920:1309..5511-

>mRNA_H-paniculata_contig7920.15949.1 ID=mRNA_H-paniculata_contig7920.15949.1|Name=mRNA_H-paniculata_contig7920.15949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3150bp|location=Sequence derived from alignment at H-paniculata_contig7920:1309..5511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCTGTGTGTTGGTGTCCTGCTGCGGGCTACCCGCAGCTGGCAAGAC
GTCCTTCTGCCGTAGCATCGTGAATTGCGGCGCACCTCTGCATCAATCTC
CTTCACCGTCAACGCCTAGTTATGGGGTCCACGTTACTCACATATGCTTC
GACAAGTACATTGACCTGGCTCTCCAGCGTGCGCGACAACCACAACACTC
TCCTGCTCAACGACGCGCCGTAGGACCGAAAATCGGCGGGCTCCCTGATA
AAGCCGAAAATAGCAACACCGGAGAGAAGCAACCAGACGAAGTCGCCAGA
GATCCCCAATATTCTACAAGGAGGGACGGCAGTACCTTGCATTGTGACAA
CAACAATGGCGCGGTCGATGAGATACAAGAAAGGGAGGAAGAGGCTGCTT
GGTGGCACGAGGGTCGCCGGGATGCCATGGCCGCTGTCGAGGCGCTCGCG
GCAAGGAACCCAGCGCTCGCGGCGGCGGTGGTGCAAGGGCAAGAAGTTCG
AGAAGAGGCACAAACAAATGGAAACGACACTACGAGGACGGGGCCTTGTG
GATGGGGGTCGGCTAAGGAGGAGTATGTGCGCTGTGAAGAGAACGAACAG
TCGGTGTTTGTCGTGCTTGTTGATGACAACATGCACTTTAGGAGCATGAG
GCACGAGGTGCTACGATTGGCTCGCGAATATGCCCTGTGTGTTGGTGTCC
TGCTGCGGGCTACCCGCAGCTGGCAAGACGTCCTTCTGCCGTAGCATCGT
GAATTGCGGCGCACCTCTGCATCAATCTCCTTCACCGTCAACGCCTAGTT
ATGGGGTCCACGTTACTCACATATGCTTCGACAAGTACATTGACCTGGCT
CTCCAGCGTGCGCGACAACCACAACACTCTCCTGCTCAACGACGCGCCGT
AGGACCGAAAATCGGCGGGCTCCCTGATAAAGCCGAAAATAGCAACACCG
GAGAGAAGCAACCAGACGAAGTCGCCAGAGATCCCCAATATTCTACAAGG
AGGGACGGCAGTACCTTGCATTGTGACAACAACAATGGCGCGGTCGATGA
GATACAAGAAAGGGAGGAAGAGGCTGCTTGGTGGCACGAGGGTCGCCGGG
ATGCCATGGCCGCTGTCGAGGCGCTCGCGGCAAGGAACCCAGCGCTCGCG
GCGGCGGTGGTGCAAGGGCAAGAAGTTCGAGAAGAGGCACAAACAAATGG
AAACGACACTACGAGGACGGGGCCTTGTGGATGGGGGTCGGCTAAGGAGG
AGTATGTGCGCTGTGAAGAGAACGAACAGTCGGTGTTTGTCGTGCTTGTT
GATGACAACATGCACTTTAGGAGCATGAGGCACGAGGTGCTACGATTGGC
TCGCGAATACAAGTGCGGCTATGCCCAGGTCTTCTTTCCAACAGCCGCAG
GTGTCGCGATCGAGAGGGATGCAAGACGGAAGTTCCCTGTCTCAGAGGCG
ACAAGTGCGGCTATGCCCAGGTCTTCTTTCCAACAGCCGCAGGTGTCGCG
ATCGAGAGGGATGCAAGACGGAAGTTCCCTGTCTCAGAGGCGGTAATAGT
TAAGATGGCGCAAAATCTCCAGCCGCCGGACTCCAATCGCTTTTCCTGGG
AACGCCATACCGTCGTCGTCCAATCGCAAAAAGATGGCAATGTGGACAGT
GCTCACGATGGATGCGCGGGGGGTTCACAAGCCGTGGAAGGCACTACTCA
AACGGTGGGGGGTTGGGGAGCGGCGATATCATCTTTCTGGGAAGTGGTTG
CAGCTGCGGCTGAGGACCCTGTGCCTCCGTTACCCACCGCTCATTTAACG
AGTGCAGAGTGCAAGGTAATAGTTAAGATGGCGCAAAATCTCCAGCCGCC
GGACTCCAATCGCTTTTCCTGGGAACGCCATACCGTCGTCGTCCAATCGC
AAAAAGATGGCAATGTGGACAGTGCTCACGATGGATGCGCGGGGGGTTCA
CAAGCCGTGGAAGGCACTACTCAAACGGTGGGGGGTTGGGGAGCGGCGAT
ATCATCTTTCTGGGAAGTGGTTGCAGCTGCGGCTGAGGACCCTGTGCCTC
CGTTACCCACCGCTCATTTAACGAGTGCAGAGTGCAAGAGTGCGGATCGG
GAAGCAACGACCGCGAGCGTTCTACACCGGCTTGATCTTGACATGCGCGA
GAGTGCGGATCGGGAAGCAACGACCGCGAGCGTTCTACACCGGCTTGATC
TTGACATGCGCGAGGCGGCGAAAATTCTGGCTGAGCAAGGTGCACGCTCT
GGTCTCACCCGCGACATGCTCCGAAGGGTTATGAACGCCTGTGCCGTCTC
TAGAAAAGCTACGTTACACCGAGCAAGGGCAACTGAAAAAGTAAAGACGG
TATATTACGTTGGTGGGAATGGCTCCCCTAGTTTTGACTGCAGCGACTCA
CCAGACGCACGCCGTGGTGATAGTGAGAGAGATAACGGTAACGTTGCCTC
TTTCAGCGATAGTGGCGTTAGCACAGCACTAAAATCGTGCTCGTCCACGA
AAAGTGTTTTCGATACACATGGACGTAGCAGTGGAAGCGGGGAGAGCATG
GCACGAGGAGCTCTCCCGCTTGACGCATTTGTGGTCGAATTCGAGCGAGC
TATCCGCGGTATTGATGAGCTAAATGCTTCCTTGAGAAGAGGCCTGGTTG
AGGCGGTGAAAGGGGTGCACCGATCACGGTGAGCGGCGAAAATTCTGGCT
GAGCAAGGTGCACGCTCTGGTCTCACCCGCGACATGCTCCGAAGGGTTAT
GAACGCCTGTGCCGTCTCTAGAAAAGCTACGTTACACCGAGCAAGGGCAA
CTGAAAAAGTAAAGACGGTATATTACGTTGGTGGGAATGGCTCCCCTAGT
TTTGACTGCAGCGACTCACCAGACGCACGCCGTGGTGATAGTGAGAGAGA
TAACGGTAACGTTGCCTCTTTCAGCGATAGTGGCGTTAGCACAGCACTAA
AATCGTGCTCGTCCACGAAAAGTGTTTTCGATACACATGGACGTAGCAGT
GGAAGCGGGGAGAGCATGGCACGAGGAGCTCTCCCGCTTGACGCATTTGT
GGTCGAATTCGAGCGAGCTATCCGCGGTATTGATGAGCTAAATGCTTCCT
TGAGAAGAGGCCTGGTTGAGGCGGTGAAAGGGGTGCACCGATCACGGTGA
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