mRNA_H-paniculata_contig7917.15944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7917.15944.1
Unique NamemRNA_H-paniculata_contig7917.15944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7917.15944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7917contigH-paniculata_contig7917:1206..4033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_001960.2
Exons1
Model size2828
Cds size2202
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7917.15944.1prot_H-paniculata_contig7917.15944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7917 1346..3547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.6275587-UTR-H-paniculata_contig7917:1205..13451622930986.6275587-UTR-H-paniculata_contig7917:1205..1345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7917 1206..1345 +
1691481539.4240103-UTR-H-paniculata_contig7917:1205..13451691481539.4240103-UTR-H-paniculata_contig7917:1205..1345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7917 1206..1345 +
1622930986.664199-UTR-H-paniculata_contig7917:3547..40331622930986.664199-UTR-H-paniculata_contig7917:3547..4033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7917 3548..4033 +
1691481539.4412735-UTR-H-paniculata_contig7917:3547..40331691481539.4412735-UTR-H-paniculata_contig7917:3547..4033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7917 3548..4033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.6462893-CDS-H-paniculata_contig7917:1345..35471622930986.6462893-CDS-H-paniculata_contig7917:1345..3547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7917 1346..3547 +
1691481539.4332726-CDS-H-paniculata_contig7917:1345..35471691481539.4332726-CDS-H-paniculata_contig7917:1345..3547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7917 1346..3547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7917.15944.1

>prot_H-paniculata_contig7917.15944.1 ID=prot_H-paniculata_contig7917.15944.1|Name=mRNA_H-paniculata_contig7917.15944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=734bp
MGRTCGNAGCAKQSSYGVAGSKRAEFCDLHARMGMVYVIKKCGNEGCFTW
PSFGVAGSWKAEFCHQHAGVRMVNVVNKKCSNDGCTKGVRYGVEGSGKAE
VCAEHAMAGMVNLKDKRCREEGCSTHPSFGVAGSRKAEFCSQHAKVGMVD
VVSKACIIEGCFTIPSFGVEGSRKADFCFQHARAGLVDVRSKKCEAEGCS
KQPHFGLKGSRKADVCGQHARAGMINVRDKKCGNEGCTKQVRYGVEGSKK
PEFCATHARPGMINVRSTKCRHVGCFKQPHYGIEGSGKAEVCAQHARAGM
VSVVGKKCSNYGCTKSPLYGVEGSRKADFCARHATAGMVNLRSKKCSNEG
CSTVPCFGVAGSGRAEVCARHAKVGMVNVLSMKCRIEGCSKQPSYGVKGS
GKAEVCAQHARAGMVDITGKKCSNDSCSKYPSYGVAGSRKTEFCVLHARP
GMICVKKRKMCANEGCSTRPSLGIEGSGKADFCTRHARAGMVNVVDRRCG
NEGCSSKPSYGVEGSRKAEFCARHAGVGMVNVVTKKCGKESCSKTVGKAK
FCGQHATVMYRVSDTAQIAETGDTSNHTQTEQEGGSVVVGCAKTKCAKKR
KHPTGGKCVDSAPGVRGSAGRIGLMPPLVLGHAIAGIDEAPAEAGAGVKL
EMTIDPSTCAGRGMRTRREAAASSSDSSKVGGSSSNSSASAKRFRCTTPV
VLGNSVAVGDVVHGQAEADVKMELAISAPFPSI*
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mRNA from alignment at H-paniculata_contig7917:1206..4033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7917.15944.1 ID=mRNA_H-paniculata_contig7917.15944.1|Name=mRNA_H-paniculata_contig7917.15944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2828bp|location=Sequence derived from alignment at H-paniculata_contig7917:1206..4033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAACTACCTGTCGCGAAACATCAGTTACTGACCCTGATCGTGGTCGG
CTGTCTGGCGGTCCGTACTCTAGCAGCAGCAGGCGGATTTGTGTGCACCC
CCGTGACGTTTTATTCGTCGGGAGAGGAGGGGGAGCGGGGATGGGTCGTA
CCTGTGGCAATGCAGGTTGTGCGAAGCAGTCATCCTATGGTGTAGCAGGT
AGCAAGAGGGCTGAGTTTTGCGACCTGCACGCCAGGATGGGGATGGTCTA
TGTCATCAAGAAGTGCGGCAACGAGGGTTGCTTCACGTGGCCGTCTTTTG
GTGTAGCGGGTAGCTGGAAGGCTGAGTTCTGTCACCAACACGCAGGTGTG
AGGATGGTCAATGTCGTGAACAAGAAGTGCAGTAACGATGGCTGCACTAA
GGGGGTTAGGTACGGTGTAGAGGGAAGTGGGAAGGCGGAAGTTTGCGCTG
AGCACGCTATGGCAGGAATGGTCAACCTCAAGGACAAAAGATGCCGCGAG
GAAGGGTGCTCCACGCACCCGTCTTTTGGTGTAGCGGGCAGCCGAAAGGC
CGAGTTCTGCAGCCAACACGCCAAGGTGGGGATGGTCGATGTTGTAAGCA
AGGCGTGCATCATTGAAGGCTGCTTCACCATACCATCTTTTGGTGTAGAG
GGAAGCAGGAAGGCCGACTTCTGCTTCCAACACGCTAGGGCTGGGTTAGT
GGATGTGAGGAGCAAGAAGTGCGAGGCTGAGGGGTGCTCCAAGCAGCCTC
ATTTCGGTTTGAAGGGGAGTCGGAAGGCGGACGTGTGCGGCCAACACGCC
AGGGCGGGGATGATCAATGTAAGGGACAAGAAGTGCGGAAATGAGGGTTG
CACCAAGCAGGTTAGATACGGCGTAGAGGGGAGCAAGAAACCAGAGTTTT
GTGCCACACACGCCAGACCGGGGATGATAAATGTGCGTAGCACGAAATGC
CGTCATGTCGGGTGTTTCAAGCAGCCGCATTATGGTATAGAGGGGAGTGG
GAAGGCGGAGGTTTGTGCTCAACACGCCAGAGCGGGAATGGTCAGTGTTG
TAGGAAAGAAGTGCAGCAATTACGGCTGCACGAAATCCCCATTGTACGGT
GTGGAGGGTAGCCGGAAAGCTGATTTCTGCGCACGTCACGCCACGGCAGG
AATGGTCAATCTCCGTAGTAAGAAGTGTAGCAACGAGGGTTGCTCCACCG
TGCCTTGTTTTGGTGTAGCGGGGAGCGGGAGGGCGGAGGTTTGCGCCCGA
CACGCAAAGGTGGGGATGGTAAATGTGCTTAGCATGAAGTGCCGCATCGA
GGGCTGCTCCAAGCAGCCAAGTTATGGTGTAAAGGGGAGTGGGAAAGCGG
AGGTTTGCGCTCAACACGCTAGAGCGGGAATGGTCGATATCACTGGTAAA
AAGTGCAGCAACGATAGCTGCTCAAAGTACCCCTCGTACGGTGTTGCAGG
TAGTCGGAAGACCGAGTTCTGCGTCCTACACGCGAGGCCTGGAATGATAT
GTGTGAAAAAAAGGAAGATGTGCGCCAACGAGGGCTGCTCCACCAGGCCG
TCTCTGGGTATAGAGGGGAGCGGAAAGGCCGACTTCTGTACCCGACACGC
CAGGGCAGGTATGGTGAATGTCGTCGACAGGAGGTGCGGCAACGAGGGCT
GCTCGTCCAAGCCGTCCTACGGTGTAGAGGGGAGCCGGAAGGCGGAGTTC
TGCGCCCGACACGCAGGGGTGGGGATGGTGAATGTCGTTACTAAGAAGTG
CGGCAAGGAGAGTTGCTCGAAGACTGTGGGAAAGGCCAAATTTTGCGGTC
AACATGCTACAGTGATGTATAGGGTATCCGACACTGCACAGATAGCCGAA
ACCGGGGATACTTCCAATCATACCCAAACCGAGCAAGAAGGTGGCAGTGT
TGTTGTTGGGTGTGCAAAAACAAAATGTGCAAAGAAACGCAAGCATCCCA
CTGGTGGAAAATGTGTTGATTCTGCCCCCGGCGTGCGTGGTAGTGCCGGG
CGGATTGGTTTGATGCCTCCCCTCGTCTTAGGACATGCCATCGCAGGGAT
TGATGAGGCCCCTGCAGAAGCAGGGGCAGGCGTGAAACTAGAGATGACAA
TCGATCCTTCGACGTGTGCTGGCCGTGGGATGAGAACGCGTAGGGAAGCG
GCAGCCTCTTCAAGTGATAGCAGCAAAGTTGGTGGTAGTTCTAGCAATAG
TAGTGCAAGTGCGAAGCGTTTTCGTTGCACGACACCGGTGGTACTGGGGA
ACTCCGTGGCGGTGGGTGATGTAGTGCACGGACAGGCGGAGGCAGACGTG
AAAATGGAGCTGGCAATTTCGGCTCCCTTTCCTTCGATTTGACGTGGATA
TGACAGGGCTAATTGTGGGTACCGCCGGAGTCTACCGGATTATGTCATGT
CATCTTCAGTGATGAAACGCGCAGTCGATTAGCCCTTAGACCGCTTGTTA
TTAAAAAAGTATCTGGTAGTCCCTTTCGTTTTAATAAGTGGAAGATAATG
GTTCGAGGGAACAGCGGCCAAAAGGATTTTTGTAATTGCGCGCGCAGCCC
GTGGTGTTGTTGTGAAGACAGTGAAACTACGGCACTGGTTAGAGCGGTGG
CAGAGAATTGAGAAGATATTTTGCACGGCACTGATGCACAGAATGGAGAA
AACTATATGCACATCAGCATGTATATTTGGCTGGGTTCAATCTCGATCCG
TTCGGGTCACGGAACCACTCACCGGACGACGGCGAAATTTCCCCCGCAGT
TATTTAGTTGTGGTTGTATGTAGAGACAATTCAAGTAATCTATCTAGTTT
GTCGGTCGTCGCGCTCAACCTTCTACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7917:1206..4033+

>mRNA_H-paniculata_contig7917.15944.1 ID=mRNA_H-paniculata_contig7917.15944.1|Name=mRNA_H-paniculata_contig7917.15944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4404bp|location=Sequence derived from alignment at H-paniculata_contig7917:1206..4033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGTACCTGTGGCAATGCAGGTTGTGCGAAGCAGTCATCCTATGG
TGTAGCAGGTAGCAAGAGGGCTGAGTTTTGCGACCTGCACGCCAGGATGG
GGATGGTCTATGTCATCAAGAAGTGCGGCAACGAGGGTTGCTTCACGTGG
CCGTCTTTTGGTGTAGCGGGTAGCTGGAAGGCTGAGTTCTGTCACCAACA
CGCAGGTGTGAGGATGGTCAATGTCGTGAACAAGAAGTGCAGTAACGATG
GCTGCACTAAGGGGGTTAGGTACGGTGTAGAGGGAAGTGGGAAGGCGGAA
GTTTGCGCTGAGCACGCTATGGCAGGAATGGTCAACCTCAAGGACAAAAG
ATGCCGCGAGGAAGGGTGCTCCACGCACCCGTCTTTTGGTGTAGCGGGCA
GCCGAAAGGCCGAGTTCTGCAGCCAACACGCCAAGGTGGGGATGGTCGAT
GTTGTAAGCAAGGCGTGCATCATTGAAGGCTGCTTCACCATACCATCTTT
TGGTGTAGAGGGAAGCAGGAAGGCCGACTTCTGCTTCCAACACGCTAGGG
CTGGGTTAGTGGATGTGAGGAGCAAGAAGTGCGAGGCTGAGGGGTGCTCC
AAGCAGCCTCATTTCGGTTTGAAGGGGAGTCGGAAGGCGGACGTGTGCGG
CCAACACGCCAGGGCGGGGATGATCAATGTAAGGGACAAGAAGTGCGGAA
ATGAGGGTTGCACCAAGCAGGTTAGATACGGCGTAGAGGGGAGCAAGAAA
CCAGAGTTTTGTGCCACACACGCCAGACCGGGGATGATAAATGTGCGTAG
CACGAAATGCCGTCATGTCGGGTGTTTCAAGCAGCCGCATTATGGTATAG
AGGGGAGTGGGAAGGCGGAGGTTTGTGCTCAACACGCCAGAGCGGGAATG
GTCAGTGTTGTAGGAAAGAAGTGCAGCAATTACGGCTGCACGAAATCCCC
ATTGTACGGTGTGGAGGGTAGCCGGAAAGCTGATTTCTGCGCACGTCACG
CCACGGCAGGAATGGTCAATCTCCGTAGTAAGAAGTGTAGCAACGAGGGT
TGCTCCACCGTGCCTTGTTTTGGTGTAGCGGGGAGCGGGAGGGCGGAGGT
TTGCGCCCGACACGCAAAGGTGGGGATGGTAAATGTGCTTAGCATGAAGT
GCCGCATCGAGGGCTGCTCCAAGCAGCCAAGTTATGGTGTAAAGGGGAGT
GGGAAAGCGGAGGTTTGCGCTCAACACGCTAGAGCGGGAATGGTCGATAT
CACTGGTAAAAAGTGCAGCAACGATAGCTGCTCAAAGTACCCCTCGTACG
GTGTTGCAGGTAGTCGGAAGACCGAGTTCTGCGTCCTACACGCGAGGCCT
GGAATGATATGTGTGAAAAAAAGGAAGATGTGCGCCAACGAGGGCTGCTC
CACCAGGCCGTCTCTGGGTATAGAGGGGAGCGGAAAGGCCGACTTCTGTA
CCCGACACGCCAGGGCAGGTATGGTGAATGTCGTCGACAGGAGGTGCGGC
AACGAGGGCTGCTCGTCCAAGCCGTCCTACGGTGTAGAGGGGAGCCGGAA
GGCGGAGTTCTGCGCCCGACACGCAGGGGTGGGGATGGTGAATGTCGTTA
CTAAGAAGTGCGGCAAGGAGAGTTGCTCGAAGACTGTGGGAAAGGCCAAA
TTTTGCGGTCAACATGCTACAGTGATGTATAGGGTATCCGACACTGCACA
GATAGCCGAAACCGGGGATACTTCCAATCATACCCAAACCGAGCAAGAAG
GTGGCAGTGTTGTTGTTGGGTGTGCAAAAACAAAATGTGCAAAGAAACGC
AAGCATCCCACTGGTGGAAAATGTGTTGATTCTGCCCCCGGCGTGCGTGG
TAGTGCCGGGCGGATTGGTTTGATGCCTCCCCTCGTCTTAGGACATGCCA
TCGCAGGGATTGATGAGGCCCCTGCAGAAGCAGGGGCAGGCGTGAAACTA
GAGATGACAATCGATCCTTCGACGTGTGCTGGCCGTGGGATGAGAACGCG
TAGGGAAGCGGCAGCCTCTTCAAGTGATAGCAGCAAAGTTGGTGGTAGTT
CTAGCAATAGTAGTGCAAGTGCGAAGCGTTTTCGTTGCACGACACCGGTG
GTACTGGGGAACTCCGTGGCGGTGGGTGATGTAGTGCACGGACAGGCGGA
GGCAGACGTGAAAATGGAGCTGGCAATTTCGGCTCCCTTTCCTTCGATTT
GAATGGGTCGTACCTGTGGCAATGCAGGTTGTGCGAAGCAGTCATCCTAT
GGTGTAGCAGGTAGCAAGAGGGCTGAGTTTTGCGACCTGCACGCCAGGAT
GGGGATGGTCTATGTCATCAAGAAGTGCGGCAACGAGGGTTGCTTCACGT
GGCCGTCTTTTGGTGTAGCGGGTAGCTGGAAGGCTGAGTTCTGTCACCAA
CACGCAGGTGTGAGGATGGTCAATGTCGTGAACAAGAAGTGCAGTAACGA
TGGCTGCACTAAGGGGGTTAGGTACGGTGTAGAGGGAAGTGGGAAGGCGG
AAGTTTGCGCTGAGCACGCTATGGCAGGAATGGTCAACCTCAAGGACAAA
AGATGCCGCGAGGAAGGGTGCTCCACGCACCCGTCTTTTGGTGTAGCGGG
CAGCCGAAAGGCCGAGTTCTGCAGCCAACACGCCAAGGTGGGGATGGTCG
ATGTTGTAAGCAAGGCGTGCATCATTGAAGGCTGCTTCACCATACCATCT
TTTGGTGTAGAGGGAAGCAGGAAGGCCGACTTCTGCTTCCAACACGCTAG
GGCTGGGTTAGTGGATGTGAGGAGCAAGAAGTGCGAGGCTGAGGGGTGCT
CCAAGCAGCCTCATTTCGGTTTGAAGGGGAGTCGGAAGGCGGACGTGTGC
GGCCAACACGCCAGGGCGGGGATGATCAATGTAAGGGACAAGAAGTGCGG
AAATGAGGGTTGCACCAAGCAGGTTAGATACGGCGTAGAGGGGAGCAAGA
AACCAGAGTTTTGTGCCACACACGCCAGACCGGGGATGATAAATGTGCGT
AGCACGAAATGCCGTCATGTCGGGTGTTTCAAGCAGCCGCATTATGGTAT
AGAGGGGAGTGGGAAGGCGGAGGTTTGTGCTCAACACGCCAGAGCGGGAA
TGGTCAGTGTTGTAGGAAAGAAGTGCAGCAATTACGGCTGCACGAAATCC
CCATTGTACGGTGTGGAGGGTAGCCGGAAAGCTGATTTCTGCGCACGTCA
CGCCACGGCAGGAATGGTCAATCTCCGTAGTAAGAAGTGTAGCAACGAGG
GTTGCTCCACCGTGCCTTGTTTTGGTGTAGCGGGGAGCGGGAGGGCGGAG
GTTTGCGCCCGACACGCAAAGGTGGGGATGGTAAATGTGCTTAGCATGAA
GTGCCGCATCGAGGGCTGCTCCAAGCAGCCAAGTTATGGTGTAAAGGGGA
GTGGGAAAGCGGAGGTTTGCGCTCAACACGCTAGAGCGGGAATGGTCGAT
ATCACTGGTAAAAAGTGCAGCAACGATAGCTGCTCAAAGTACCCCTCGTA
CGGTGTTGCAGGTAGTCGGAAGACCGAGTTCTGCGTCCTACACGCGAGGC
CTGGAATGATATGTGTGAAAAAAAGGAAGATGTGCGCCAACGAGGGCTGC
TCCACCAGGCCGTCTCTGGGTATAGAGGGGAGCGGAAAGGCCGACTTCTG
TACCCGACACGCCAGGGCAGGTATGGTGAATGTCGTCGACAGGAGGTGCG
GCAACGAGGGCTGCTCGTCCAAGCCGTCCTACGGTGTAGAGGGGAGCCGG
AAGGCGGAGTTCTGCGCCCGACACGCAGGGGTGGGGATGGTGAATGTCGT
TACTAAGAAGTGCGGCAAGGAGAGTTGCTCGAAGACTGTGGGAAAGGCCA
AATTTTGCGGTCAACATGCTACAGTGATGTATAGGGTATCCGACACTGCA
CAGATAGCCGAAACCGGGGATACTTCCAATCATACCCAAACCGAGCAAGA
AGGTGGCAGTGTTGTTGTTGGGTGTGCAAAAACAAAATGTGCAAAGAAAC
GCAAGCATCCCACTGGTGGAAAATGTGTTGATTCTGCCCCCGGCGTGCGT
GGTAGTGCCGGGCGGATTGGTTTGATGCCTCCCCTCGTCTTAGGACATGC
CATCGCAGGGATTGATGAGGCCCCTGCAGAAGCAGGGGCAGGCGTGAAAC
TAGAGATGACAATCGATCCTTCGACGTGTGCTGGCCGTGGGATGAGAACG
CGTAGGGAAGCGGCAGCCTCTTCAAGTGATAGCAGCAAAGTTGGTGGTAG
TTCTAGCAATAGTAGTGCAAGTGCGAAGCGTTTTCGTTGCACGACACCGG
TGGTACTGGGGAACTCCGTGGCGGTGGGTGATGTAGTGCACGGACAGGCG
GAGGCAGACGTGAAAATGGAGCTGGCAATTTCGGCTCCCTTTCCTTCGAT
TTGA
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