mRNA_H-paniculata_contig79118.15940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig79118.15940.1
Unique NamemRNA_H-paniculata_contig79118.15940.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.050e-10
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAG--QGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETCSNLFVTVANGEILPIEGYGKMLVWTKDRG-EIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            CF C +PGHL+ NC +++    K   +  SS        SD  +    H  T  +A    GE A                    W+ DSGA+AHMT  K     +E     ++T+A+G+   I G G  ++   D   E+ ++ +S V +VPGL TNL S++ +  + L V    +G  I
Sbjct:  212 CFYCKKPGHLQRNC-RKLLEAKKEENNTSSSGTKPK--KSDSVKAKAVHSDTRGIAFVVNGENA------------------RSWIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRI 370          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A6A3I090_9STRA (CCHC-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I090_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.570e-10
Identity = 49/178 (27.53%), Postives = 78/178 (43.82%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETC-SNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            CF+CN+PGH+K +CP+R        G  +               D V    T R+ G                         W+ DSGATAHMTP +  + +YE   + + VT+A+G+   + G G  L+   D+   +++++  V H+ GLD  L S+  +  +GL V  +     I
Sbjct:  223 CFKCNQPGHMKRDCPER------NAGGDD---------------DAVFAVGTERLNG-------------------------WLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQ---NRIKMVDVLHISGLDRRLLSVGKLAERGLNVEFQRSSCVI 351          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A6G0QKW0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QKW0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.570e-10
Identity = 49/178 (27.53%), Postives = 78/178 (43.82%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETC-SNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            CF+CN+PGH+K +CP+R        G  +               D V    T R+ G                         W+ DSGATAHMTP +  + +YE   + + VT+A+G+   + G G  L+   D+   +++++  V H+ GLD  L S+  +  +GL V  +     I
Sbjct:  223 CFKCNQPGHMKRDCPER------NAGGDD---------------DAVFAVGTERLNG-------------------------WLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQ---NRIKMVDVLHISGLDRRLLSVGKLAERGLNVEFQRSSCVI 351          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: H3H5K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K9_PHYRM)

HSP 1 Score: 66.6 bits (161), Expect = 1.220e-9
Identity = 52/178 (29.21%), Postives = 75/178 (42.13%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETC-SNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            CF+CN+PGH+K +CP R        G  +               D V    T R  G                         W+ DSGATAHMTP +  + +YE   + + VT+A+G+ L + G G + +   D+  I  V    V H+PGLD  L S+  +  +GL V  +     I
Sbjct:  223 CFKCNQPGHMKRDCPVR------NTGGDD---------------DAVFAVGTERFNG-------------------------WLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTIKMVD---VLHIPGLDRRLLSVGKLAERGLNVEFQRSSCVI 351          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A1W7R6K4_AEDAL (Putative copia-type polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6K4_AEDAL)

HSP 1 Score: 65.9 bits (159), Expect = 2.560e-9
Identity = 47/178 (26.40%), Postives = 73/178 (41.01%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETCSNLFVTVANGEILPIEGYGKMLVWTKD-RGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            CF C +PGH K++C +           GE+S      F         +     +  GQ +  S    + +D           W  DSGA+ HMT SK+    +E  S++ V +A+G      G G   V   D  G   ++ L+ V +VP L++ L S+  +  +G  V  K     I
Sbjct:    5 CFFCKKPGHFKVDCRKWQAQKQAHQDGGEASGGKPQQFK--------QQAKAKQAKGQHDPVSFTAKVVDDAVCAGVKLGRSWTIDSGASCHMTGSKDFFKSFEETSSVTVVMADGNCSRSSGNGSGTVTGVDGTGMPKEINLNNVLYVPNLESGLLSVSKIAEKGFQVLFKRNSVEI 174          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: UPI001FA2307D (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA2307D)

HSP 1 Score: 64.7 bits (156), Expect = 5.510e-9
Identity = 33/98 (33.67%), Postives = 53/98 (54.08%), Query Frame = 1
Query:  238 EEVWVADSGATAHMTPSKELMFDYETCSNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            + VW+ DSGA+AHMT  KE   +   C+   +T+ N + + + G GK+L+     G+     L  V +VP L  NLFS  +++ +   +  K+ GA I
Sbjct:  272 DNVWILDSGASAHMTYRKEFFVELLECNQKSLTLGNKQSVEVAGIGKVLIKRCVNGQWENSELHDVLYVPNLRRNLFSEGVIMRKSYIIIKKDSGAFI 369          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A2P4YAE2_9STRA (Copia proteinlike putative (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAE2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.700e-9
Identity = 48/158 (30.38%), Postives = 69/158 (43.67%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETCSNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSL 474
            C  C E GH    CP RI              R      +D + D  ++ F   + G G   S                 EVW+ DSGAT HMT SKE M +Y+  + + V +A+  ++   G G +++  K    I K  L++V H+P L  NLFS+
Sbjct:   19 CHYCGEQGHWIAKCPVRI-------RENAERQRPQRANVADDYEDCGDYLF---LVGGGTSKS----------------SEVWLVDSGATQHMTYSKEYMKNYKKMTPVDVHLADDGVVQAVGSGDIVMSMKTPRGIKKGVLTKVWHIPKLSRNLFSV 150          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A6A3GEB1_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEB1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.060e-9
Identity = 44/153 (28.76%), Postives = 70/153 (45.75%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHGFTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELMFDYETC-SNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLD 456
            CF+CN+PGH+K +CP+R        G  +               D V    T R+ G                         W+ DSGATAHMTP +  + +YE   + + VT+A+G+ L + G G + +   D+   +++++  V H+PGLD
Sbjct:  116 CFKCNQPGHMKRDCPER------NAGGDD---------------DAVFAVGTERLNG-------------------------WLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKLTVVGRGTVRLLGLDQ---NRIKMVDVLHIPGLD 219          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.030e-8
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  247 WVADSGATAHMTPSKELMFDYETCS-NLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 531
            W+ DSGATAHMTP +  +F+YE    N+ VT+A+G+ + + G G + +   D     ++++  V H+PGLD  L S+  +  +G++V  ++    I
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDG---KRIKMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355          
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  247 WVADSGATAHMTPSKELMFDYETC-SNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPGLDTNLFSLQIVVNQGLTV 504
            W+ DSGATAHMTP +E +FDY+   +++ VT+A+G+ + + G G + +   D     ++R+  V H+PGLD  L S+  +  +GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDG---KRIRMLDVLHIPGLDRRLLSVGKLAERGLNV 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79118.15940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q967L5_AEDAE3.050e-1029.44Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A6A3I090_9STRA3.570e-1027.53CCHC-type domain-containing protein n=8 Tax=Phytop... [more]
A0A6G0QKW0_9STRA3.570e-1027.53CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
H3H5K9_PHYRM1.220e-929.21Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1W7R6K4_AEDAL2.560e-926.40Putative copia-type polyprotein (Fragment) n=1 Tax... [more]
UPI001FA2307D5.510e-933.67Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A2P4YAE2_9STRA6.700e-930.38Copia proteinlike putative (Fragment) n=1 Tax=Phyt... [more]
A0A6A3GEB1_9STRA7.060e-928.76CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A329SN38_9STRA1.030e-834.38Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA1.050e-839.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79118contigH-paniculata_contig79118:5..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue9.7e-12
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.9770699-CDS-H-paniculata_contig79118:4..5381622930985.9770699-CDS-H-paniculata_contig79118:4..538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79118 5..538 +
1691481539.2523108-CDS-H-paniculata_contig79118:4..5381691481539.2523108-CDS-H-paniculata_contig79118:4..538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79118 5..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79118.15940.1prot_H-paniculata_contig79118.15940.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig79118 5..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig79118.15940.1

>prot_H-paniculata_contig79118.15940.1 ID=prot_H-paniculata_contig79118.15940.1|Name=mRNA_H-paniculata_contig79118.15940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDWFRDIVEHG
FTARVAGQGEFASIIELIEEDKPVPVDGCEEVWVADSGATAHMTPSKELM
FDYETCSNLFVTVANGEILPIEGYGKMLVWTKDRGEIHKVRLSRVAHVPG
LDTNLFSLQIVVNQGLTVCLKEEGAAIA
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mRNA from alignment at H-paniculata_contig79118:5..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig79118.15940.1 ID=mRNA_H-paniculata_contig79118.15940.1|Name=mRNA_H-paniculata_contig79118.15940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig79118:5..538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCG CATATGTCCGATCTGCAAAGGGATTGGTCATGGCGAGAGCAGTCACAGGT TGTCAGCAATGTTCTCTTCGGACTGGTTCAGGGACATTGTTGAACACGGT TTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTCGATAATTGAGCT TATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGGTTTGGG TGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAAGGAATTAATG TTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGGCGA AATACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAAGATC GGGGCGAGATACACAAAGTCAGATTGAGTCGTGTAGCACATGTTCCGGGC CTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACTTAC TGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig79118:5..538+

>mRNA_H-paniculata_contig79118.15940.1 ID=mRNA_H-paniculata_contig79118.15940.1|Name=mRNA_H-paniculata_contig79118.15940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig79118:5..538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCG
CATATGTCCGATCTGCAAAGGGATTGGTCATGGCGAGAGCAGTCACAGGT
TGTCAGCAATGTTCTCTTCGGACTGGTTCAGGGACATTGTTGAACACGGT
TTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTCGATAATTGAGCT
TATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGGTTTGGG
TGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAAGGAATTAATG
TTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGGCGA
AATACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAAGATC
GGGGCGAGATACACAAAGTCAGATTGAGTCGTGTAGCACATGTTCCGGGC
CTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACTTAC
TGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCATGTTTTCAATGTAATG
AGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGC
AAAGGGATTGGTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTC
TTCGGACTGGTTCAGGGACATTGTTGAACACGGTTTCACGGCCAGAGTGG
CAGGGCAGGGCGAGTTTGCTTCGATAATTGAGCTTATTGAAGAGGACAAG
CCAGTACCAGTAGATGGTTGTGAGGAGGTTTGGGTGGCCGACAGTGGGGC
TACGGCCCACATGACTCCGTCTAAGGAATTAATGTTTGATTACGAAACCT
GCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAATACTTCCGATTGAG
GGATATGGTAAGATGTTGGTATGGACGAAAGATCGGGGCGAGATACACAA
AGTCAGATTGAGTCGTGTAGCACATGTTCCGGGCCTGGACACAAATTTGT
TTTCCCTACAGATTGTAGTGAACCAGGGACTTACTGTCTGTTTGAAGGAG
GAGGGTGCAGCAATTGCA
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