mRNA_H-paniculata_contig7905.15929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7905.15929.1
Unique NamemRNA_H-paniculata_contig7905.15929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: D7G5H0_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H0_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 4.060e-90
Identity = 153/263 (58.17%), Postives = 199/263 (75.67%), Query Frame = 1 
Query:    1 RTKQVKAATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGE-RNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLPDD 786
            R +++  ATA M++  VP V  +L +LP+  QK   L +ELHRHGVN+RHLG VR  + E  +  N +L+D+MLTEM+ARTLKN+LR FQR WMK +RSTSEQGMR+LVV FLNLVTGA+ NS  FW+ +V+ GVLQRFG+ +LT SER+ +Q +IS++ P +L+ CV KLTEMQG+ LT  A   F + + P+ F F+V+DI EI+PIVRYMHILDYGGGVMLSMQAQRL  + + + R V RL  +A +FF+TAY+SLPDD
Sbjct:  190 RNQEIHDATAAMLEAAVPNVVEKLTSLPQDVQKTLHLDVELHRHGVNVRHLGRVRYLLMEQNKPENELLKDMMLTEMIARTLKNILRCFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWKKNVLTGVLQRFGLVSLTTSERRDVQ-KISRN-PCVLQDCVFKLTEMQGVELTEDAKAHFYA-DSPVGFEFMVSDIHEIKPIVRYMHILDYGGGVMLSMQAQRLKEEGERNARTVERLQGMANKFFITAYRSLPDD 449
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: D8LF63_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF63_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 7.950e-86
Identity = 152/260 (58.46%), Postives = 196/260 (75.38%), Query Frame = 1 
Query:   10 QVKAATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGE-RNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLPDD 786
            Q+  AT+ M++  VP V  +L +LP+  QK   L +ELHRHGVN+RHLG VR  + E  +  N +L+D+MLTEM+ARTLKN+LR FQR WMK ++STSEQGMR+LVV FLNLVTGA+ NS  FW++ V+ GVLQRFG+ +LT SER+ +Q +IS+  P +L+ CV KLTEMQG++LT      F + + P+ F F V+DI+EI PIVRYMHILDYGGGVMLSMQAQRL  + K + R V RL+ +A QFF+TAY+SLPDD
Sbjct:  446 QIHDATSVMLEVAVPNVVEKLTSLPQDVQKTLHLDVELHRHGVNVRHLGKVRFLLMEQNKPENGLLKDMMLTEMIARTLKNILRCFQRTWMKAEKSTSEQGMRMLVVRFLNLVTGAHINSATFWKEKVLTGVLQRFGLVSLTTSERRDVQ-KISRD-PYVLQDCVFKLTEMQGVVLTEDTKAHFYA-DSPVGFEFTVSDIREINPIVRYMHILDYGGGVMLSMQAQRLMAEGKGNTRTVERLHGMANQFFITAYRSLPDD 702
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: A0A7S2RNV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNV0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.610e-45
Identity = 102/290 (35.17%), Postives = 164/290 (56.55%), Query Frame = 1 
Query:    4 TKQVKAATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRHLGLVRANI-KEGGERNA-MLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRFGVTALTMSER---------QHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMS-FAFVVADIQEIRPIVRYMHILDYGGGVMLSM----QAQRL------------ANQSKVDERIVNRLNWVAKQFFLTAYQSLPDDQ 789
            T +V+AAT T++ +VVP +AA L + P  + +  D A+ELH HGVN+RH+GL+R+ I +   +R A  LR  +L E+VAR+LKN+L+  QRKWM+  RS+S  GM LLV  FLNL++G++ +S  FW + ++ G++ RFG   L   ER            + E  +   + LK  V +L E+ G++ +      F+S    ++ + F+  DI+E++P+V+YMHI+DY   + L M    + ++L            A  +    R V RL  +A      A+ ++P D+
Sbjct:   82 TAEVEAATQTLVHDVVPRLAASLLSCPPAELEFLDFALELHSHGVNLRHMGLIRSYIPRHNHDRRAETLRSRLLVEIVARSLKNMLKDDQRKWMRANRSSSWHGMSLLVAQFLNLISGSHPSSRVFWGEALLEGMVNRFGECCLFPEERLPAEGQEGVMTWESEFRRGGSSRLKDLVFRLAELTGIVFSSQVKSDFDSDPDAVNGYEFLAQDIEELKPVVKYMHIIDYSSSINLIMGSLARREKLMQCEQDAPGTLDAEATSASMRTVKRLENMAHVRLHKAHHAMPRDE 371
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: A0A7S1UGK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGK4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.490e-25
Identity = 57/127 (44.88%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:    7 KQVKAATATMIKEVVPMVAARLKALPETQQ--KNFDLAIELHRHGVNMRHLGLVRANIKEGGERN-AMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFW 378
            + VK AT  + ++V+P +A  L A  +T    +  ++++E+H+ GVNMRHLGL+RA+I    E N   +R I+L E+V RTLK +LR + R+WM+ +RS+SE G+ ++VVNFLNL TG++ N + FW
Sbjct:   50 RDVKEATLFLFRDVIPALATSLCAKYKTASAVRKMNVSLEMHKCGVNMRHLGLLRAHIPLDAEANHVQIRQILLREIVGRTLKQLLRDYMRRWMRSERSSSELGLIMVVVNFLNLTTGSHLNRNLFW 176
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 8.060e-25
Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:  181 GGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHP---MSFAFVVADIQEIRPIVRYMHI 642
            GG R          E+V RTLK VLR FQR+WMK ++S+SE+GM LLV  FLNLVTG ++ S  FWR++V  GV QRFG  ALT SER  L   +   +P IL T V +L ++ G+    +  ++  S +     + F F + DI++I  +V  M I
Sbjct:  300 GGGRGRARGHRFQVEVVVRTLKLVLREFQRRWMKSEQSSSERGMHLLVTQFLNLVTGHHERSHLFWRENVTTGVCQRFGTVALTESERAGLWT-VCSDRPEILLTIVKELVKVTGVRFKESVNQKLRSRKAKSVVVGFEFHLGDIRDIEAVVTPMAI 455
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: F1A264_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A264_DICPU)

HSP 1 Score: 96.7 bits (239), Expect = 7.220e-19
Identity = 75/263 (28.52%), Postives = 137/263 (52.09%), Query Frame = 1 
Query:   10 QVKAATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLPDDQVLL 798
            +V+ AT  +    +P ++  +++   T   +  L   +HR G+N+R+LGL+R NIK+     ++LR I+L+E++AR LKN+LR+  R+ MK  RS        +V++F N+V G   +S K    ++   +L RF  +     + +   +  S    ++     L++ +M G+ L   +  +F+  + P SF  V++DI  +   V++M+I+    G  LS+Q  +L  Q   +     RL  +A   F  A +S PD++ +L
Sbjct:  610 EVREATHYLFYMYIPKISKWIESNATTIDWHSRLTEIIHREGINVRYLGLIRQNIKD-----SILRGILLSEIIARVLKNLLRAELREKMKKLRSLEADSYTQVVIDFFNIVLGDPIHSHKKLWSNLKNEILLRFNDSLTDQEKEEGFFLMDSIDTYHVF----LRIQQMTGIKLGEESMLEFK--KDPKSFRVVLSDIVGMDVKVKHMNIISLAEGNALSLQCMKLEGQPGSE-----RLFKLATDKFEEAIRSTPDNKAIL 856
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: A0A7S0DIC4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIC4_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.210e-18
Identity = 76/257 (29.57%), Postives = 119/257 (46.30%), Query Frame = 1 
Query:   22 ATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRST--SEQGMRLLVVNFLNLVTGANKNSDK--FWRDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLP 780
            AT  +  EV+P  A      P  + K   ++ ELHR G+N+RH+GL+R  IK         R  +L  M +RTLKN+LR   R  +   + T  SE   R ++V+FLNLVT A++      FW   +   +  RFG  A+++ E  +L   +      I+K  V    +  G+ LT       ES      + FV  D+  +   +++M ++DY    +LS +A +            +RL  +A + F    QS P
Sbjct:  445 ATRILCNEVIPAFAEEFAKRPVERLKAIHVSEELHRKGINVRHMGLLRHLIKADTPSADQARRTLLVAMCSRTLKNLLRREMRMELARHKKTQPSEHESRGMIVDFLNLVTRAHQTQQTYDFWGTEIPFELKVRFGPKAISIEEENNLFGAVRNDIVKIVKYIV----DSTGVQLTTTCLETLESSG--AGYEFVSVDLSALAVRIKHMSVIDYATAKVLSQEAYKDTGVGG------DRLLSLAMESFYKTLQSDP 689
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: A0A8J4PLZ3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLZ3_9MYCE)

HSP 1 Score: 94.0 bits (232), Expect = 5.860e-18
Identity = 73/260 (28.08%), Postives = 122/260 (46.92%), Query Frame = 1 
Query:   85 ETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFW---RDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNIL-----------------------KTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLPDD 786
            E  Q+   +  E+HR+G+N+RH+G VR   K     +  +RD++L EM AR++KN+++   R+ MK ++  SE+  + +V+   N V      S  FW    D + V     F     T+ ++Q +   +  S  +IL                       K  + +L  + G+  +P  G Q E    P  F F+ +DI EI P V++M+I+DY  G+ L M +     + K+      RL  +A Q F  + +S PD+
Sbjct:  706 EVPQQLLRIIEEMHRNGINIRHMGRVRYYTK-----SKTIRDLLLLEMTARSIKNIIKDEMRRKMKDEKGLSEEPFKEVVIEIFNQVLD---QSSSFWIKVLDCIRVKYFMAFMKYDETLDQQQQVVPSLRSSSSSILSSTSSHYPIEEVDEQTWMENINIKNLLDRLQILTGISFSP--GAQAEFSRDPFRFQFLDSDILEISPNVKHMNIIDYAEGMALLMSSLAKKGREKL------RLLKMATQKFQISLKSNPDN 949
[Close]
BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: A0A2P6NR00_9EUKA (Clu domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NR00_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.070e-17
Identity = 78/275 (28.36%), Postives = 132/275 (48.00%), Query Frame = 1 
Query:   10 QVKAATATMIKEVVPMVAARL-----KALPETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRF--GVTALTMSERQHLQIEISQSKPNILK-TCVL--KLTEMQGLILTPAAGRQFESGEHPMSFAFVV--ADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLPDDQVLL 798
            +++ AT  +   V+P  A  L     + LP+ +     L + LH HG+N+R+LG VRA +       A  R  +L EM+ART+K  +RS  R  M   + T E+  + +V+  LN++ G +  S + W   +   V  +F  G+T   +SE    +   S S P+++   C+L  ++TE  G   +P   + FE  E    F   +   D++ +   V+ M+I+ +  G +L ++A      SK  E    RL  +A   F  A +S   ++V L
Sbjct: 1286 EIREATEHLFGTVIPKFAEHLIELASETLPDYRSNFPSLLLSLHSHGINIRYLGRVRACLTGDTPGEAYWRFFILLEMLARTIKQWVRSDLRNTMVRLKQTGEEPYKAMVIRTLNILFGDHSMSTEEWNGTLRQKVKNKFAFGLTDEELSEGYDFKAAFSASLPDVIDGKCLLFKRITEQCGFSFSPTTKQAFEENEAVYRFQRPLDETDLEALDVRVKSMNIVQHSEGFILKLKA------SKRTEHESERLFHLAISKFKAAIESHSSNKVTL 1554
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BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Match: F4PL66_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PL66_CAVFA)

HSP 1 Score: 92.0 bits (227), Expect = 2.720e-17
Identity = 72/264 (27.27%), Postives = 130/264 (49.24%), Query Frame = 1 
Query:   10 QVKAATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRHLGLVRANIKEGGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTSEQGMRLLVVNFLNLVTGAN-KNSDKFWRDHVVVGVLQRFGVTALTMSERQHLQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVADIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQFFLTAYQSLPDDQVLL 798
            +VK AT  +    +P VA+ + A   T      L   +HR G+N+R+LG++R ++++       L+ ++LTE+VAR  KN++R+  R+ MK  RS        +V++F N++ GA  +  D+ W   +   +L RF  +     +  +  ++      NI     ++L  M G+ L   + ++ ++     SF  V++DI  +   V++M+I+    G  LS+Q          D R   RL  +A   F  A +S PD++ +L
Sbjct:  726 EVKEATEYLYNVCIPKVASWMDAHSNTINWLSQLTEIIHREGINVRYLGIIRHHVQD-----PRLKQVLLTEIVARVFKNIIRAELREKMKEMRSIEADSYIQVVMDFFNIILGAPVQKHDRLWYHSIKNEILLRFDNSLSNEEKDSNFDLKSQVDIYNIF----VRLLSMTGIKLADESMKEMKNDSQ--SFRVVLSDIAAMDVKVKHMNIISLAEGNALSLQCMMW------DGRGSERLFKLATNKFEEAIRSTPDNKDIL 972
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7905.15929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5H0_ECTSI4.060e-9058.17eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
D8LF63_ECTSI7.950e-8658.46eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2RNV0_9STRA1.610e-4535.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UGK4_9STRA1.490e-2544.88Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7G9G7_ECTSI8.060e-2542.68Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
F1A264_DICPU7.220e-1928.52Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A7S0DIC4_9EUKA1.210e-1829.57Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A8J4PLZ3_9MYCE5.860e-1828.08Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A2P6NR00_9EUKA1.070e-1728.36Clu domain-containing protein n=1 Tax=Planoprotost... [more]
F4PL66_CAVFA2.720e-1727.27Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7905contigH-paniculata_contig7905:5626..10697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue1.8e-22
Seed eggNOG ortholog2880.D7G9G7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Clustered mitochondria
EggNOG OGs2DZMV@1,2S753@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size801
Cds size801
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7905.15929.1prot_H-paniculata_contig7905.15929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7905 5626..10697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.614381-CDS-H-paniculata_contig7905:5625..57481622930984.614381-CDS-H-paniculata_contig7905:5625..5748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 5626..5748 -
1691481538.635447-CDS-H-paniculata_contig7905:5625..57481691481538.635447-CDS-H-paniculata_contig7905:5625..5748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 5626..5748 -
1622930984.630566-CDS-H-paniculata_contig7905:7018..70661622930984.630566-CDS-H-paniculata_contig7905:7018..7066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 7019..7066 -
1691481538.6479967-CDS-H-paniculata_contig7905:7018..70661691481538.6479967-CDS-H-paniculata_contig7905:7018..7066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 7019..7066 -
1622930984.6457999-CDS-H-paniculata_contig7905:8376..84841622930984.6457999-CDS-H-paniculata_contig7905:8376..8484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 8377..8484 -
1691481538.658601-CDS-H-paniculata_contig7905:8376..84841691481538.658601-CDS-H-paniculata_contig7905:8376..8484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 8377..8484 -
1622930984.6674116-CDS-H-paniculata_contig7905:9191..93911622930984.6674116-CDS-H-paniculata_contig7905:9191..9391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 9192..9391 -
1691481538.6724532-CDS-H-paniculata_contig7905:9191..93911691481538.6724532-CDS-H-paniculata_contig7905:9191..9391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 9192..9391 -
1622930984.6843588-CDS-H-paniculata_contig7905:10375..106971622930984.6843588-CDS-H-paniculata_contig7905:10375..10697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 10376..10697 -
1691481538.6874392-CDS-H-paniculata_contig7905:10375..106971691481538.6874392-CDS-H-paniculata_contig7905:10375..10697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7905 10376..10697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7905.15929.1

>prot_H-paniculata_contig7905.15929.1 ID=prot_H-paniculata_contig7905.15929.1|Name=mRNA_H-paniculata_contig7905.15929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
RTKQVKAATATMIKEVVPMVAARLKALPETQQKNFDLAIELHRHGVNMRH
LGLVRANIKEGGERNAMLRDIMLTEMVARTLKNVLRSFQRKWMKHQRSTS
EQGMRLLVVNFLNLVTGANKNSDKFWRDHVVVGVLQRFGVTALTMSERQH
LQIEISQSKPNILKTCVLKLTEMQGLILTPAAGRQFESGEHPMSFAFVVA
DIQEIRPIVRYMHILDYGGGVMLSMQAQRLANQSKVDERIVNRLNWVAKQ
FFLTAYQSLPDDQVLL*
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mRNA from alignment at H-paniculata_contig7905:5626..10697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7905.15929.1 ID=mRNA_H-paniculata_contig7905.15929.1|Name=mRNA_H-paniculata_contig7905.15929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5072bp|location=Sequence derived from alignment at H-paniculata_contig7905:5626..10697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAACAAAACAGGTGAAAGCAGCGACAGCAACCATGATCAAGGAGGTGGT
GCCCATGGTGGCGGCGAGGCTTAAAGCCCTTCCCGAGACCCAGCAGAAAA
ACTTCGACCTTGCGATAGAGCTACATCGGCACGGAGTTAACATGCGGCAC
CTGGGGCTAGTGCGGGCTAACATTAAGGAGGGGGGGGAGCGGAACGCGAT
GTTGCGGGACATTATGCTGACGGAGATGGTGGCGAGGACCCTGAAGAATG
TTCTTCGAAGTTTCCAGAGGAAGTGGATGAAGCATCAGAGGTCGACGAGC
GAGCAGGGGATGAGATTGCTTGGTGAGACAGAGACAGAGAAAGAGAGAGG
AAAGAGACAGGGTATGGACATCGATCAGCATGGGAGGGGGGCGGGGCGGG
GATTCGATTTATGTTGGAAGTTGGGGTCAAGATCCTTGATAACCATTAAA
ATATTTCATGCCGAGGTAATATAGCTCATAATTATGCCCACATATGCTCA
CCAGTTTCTATGCTTGGCTCTCAAGTTAACAAGATGGAGGCATCTATTTA
ATATAGAGCATATATACATACATAAGTACAACATTAACGTTTTTCCTGGG
TGAGTGCTCAAGCTACGTTCAGCCCAGAAGTTTCCCGCGGTGTACCCTCT
CTCAGCAACGACCCTAAAGCTAAGGTTCGGAAAGGTTGGTGGAGGGTAGT
GGTCGGTCGTGAGCAGTAAAGATGGGCCATGAACGTTTCGACACGTTGTA
GTAGAACACTACTGCTCCCGGGAGGCAGGCCCCCCGGCGCTCCCCTGTAC
GGGGATGATGGGTCGCTCTCGGCAGCGGGACCGTCGATGCCTCCGTCGGT
TTGATGGTGGCGAGTCGCCCTTGTGGCTGGGCCAGATTTATTTAGACCGA
CCCCCTAGTTTGGTCAGTTTTTGGACAAGTATTCTAGTAGCTTGAATATG
GTGCGAGTATAGATGCCTTCAATTTGTTTCATGGTTTTTTGTCACGTTTT
GTGCAGTAATTTATGCACGATGTGCCTGTACTTTTGACTCTATGGTACCT
TTCCCCAATCCCCCTGATTTGGTCTGTCTGTGGATGCAGGTAATGTGGAT
GATGAGCAATTGAGCAGAGTGAAGGTACTGCGTATACATACATGTATATA
TATATAACTCAATTTTTGTATCACGATTTTTGTTCATGCTTTATTTGCAT
CATAGGTAATCTATACATATCTGCTTGCATTTTTGACTTGCTCTTCATAT
CGACCCCCCCCCGTCCCCTGTAATTCTGGTTTACCGGTACGTCCTTGTTT
TGGCAGTGGTAAATTTCTTGAACCTGGTGACGGGTGCCAACAAAAATAGT
GATAAGTTTTGGCGAGATCATGTGGTGGTGGGGGTGCTGCAGCGGTTTGG
GGTAACTGCTCTCACGATGTCCGAAAGGCAGCACCTTCAAATTGAGATAT
CCCAGTCGAAGCCCAACATCTTGAAGACTTGCGTGCTGAAGCTGACCGAG
ATGCAGGTACATTAAAGTAGTTGTAGTGTGTGTGTGTGTGTGTGTGTGTG
TGTATGCGTACTTCGAGGTGGGGTGAGTGCGGGTTAGTTTGTTTGTGAAG
TACCGTGAGCTTGAAGTTTGGATTTTCAAGGATTGGATGAACGGCCCCAC
AAGAGGTACTGTGGATTGTTGCCTCAATTCCATTGAACGGTCGAACGTGA
TTTTTTGTGCGTGGCGTATCGCTCAGTTGTTGGTTTGTTTGAGTGGATTT
TGATGTGATTTGAAAAAAAAACCTAACATGACCAACTAACGCATGAGGTG
GTCATGATCCATTTCGCGTTGGATATCCATGCTTCAACTTTGTCGCCGCT
ATGATTTTGAAGATCGTTAGAGGAATTCGAAAAAAAGATGAAGACTACAA
GATCATATATTTTTTTGGATGATGACTATTAAGAATTGTTCGCCGTTGCA
CGGTGGCCGAAACAATGATGTTCCTGGTTGTTCTTGGATATCGACGGTTT
TTATTATCCCGTTTTTTGGTCAATTTGTTGGATATTATGGCAAAAACCAT
GTGTTCACTTGTTTCGGATAGCGACAAAAATTGTTTTTTTTCTCGGGAAA
TGGCCAAATTGTTCAATCGCTTGTTTTTGGATAACGGCGAGAACCTAGTT
GTATGCTTGTTAGAAAATGACAAAAACCATGTATCCATTTGTTGGATAAT
GGCACATCCACAGGGACTTATCCTGACGCCGGCGGCGGGGCGCCAGTTCG
AGAGCGGTGAACATCCGATGTCGTTCGCTTTTGTTGTGGCGGATATACAG
GAGATTCGACCCATAGTACGGGTAAGTCCAGGAGTCATATTCCACATTCC
TTTATATCTTTTTTTTAGGCACCAACTGTTACGTATGTAGGACGATGACC
TATACAAAATCAGGAGTGGTAACTGCCATAGGGGAGTAACTTGTGGAGTA
TGACACTATCTCTAGTAGAATCTGGAGGTAGCTAACCATAGTGCGTAGAT
TTTTCAAATGCACTTATCTCGAGAACTACGGCGCCACTGACAATGCACGA
TGTGCCGTTGGAAAGTTGCTACGAAGATGTGTCGAAGGACGGGCTCTTTC
GATTACGTGATGTCTCCGTTTTCAGACAGTCACGTTTGAGGAACTTGCGC
ACCCTGGTCGTACGATATCTCTGTTTTTTTACGGTACCCTACCAACGATA
GTCAACTCTGTTGCCGTGTACGGCTAAATGCTGGCTATAAGAGTCTGCAC
AGTTGTATTATGGATGTACTGGTGGCAAACCCTAAACGAGAATAAAAAGA
AAGGTTCTTTTAGTGGTCGGTGCAGGGTCGGCGCTAGCGGTGCCACCGCA
GGCAGAAAAATTACGCGTCATGACTTCAGCCTTCTTCGAAATCTTGTGCC
AATTTTTACCAGGAGATGACCAATACAAGGCTTTGATTTTTATGATGAGT
CGTTTTTACCGTAACATATATGAGATGCCAATATTTTGGAAGCCTGGAAG
ATCTCCGGAGATTTCTCCAGCCATTACCAATACTACAGCGAAATTCGGCG
TGCCAGTGCGACCCAGCCCTTCTGTTGGTCTAATTGTCTCTAGTTTTCTA
TGCATTTAGCACGTGAAATCGTTTGCCGTCTGCCTGCTTTCTGGAAAGCT
TTGACCGATTTCAAACCCGAAATAAAAATAGCGGACGCTGTCGAAAGTAA
GGTGTTATTTACCCCTCTTAATCATGGTGCAATATTAAAGAATCCTATCG
GCAGCTTGCCGTAGGGAGGCGCGGAGCCGCCTCCGGCGGCAGTCCCTCCT
GGGGGCGCTCTCAGTTTGTGGACAAGTATTGCTGGATAATGGCATCGTTC
ATCCTACTACAGTACAAACCCCCTAGTTTGTTGAGTTTTTGGACAATAAC
GAAGTATTCCAGCAACTTAAGATGCTACGCATACCTCTATTTTGTTGTAC
GGTCGTTGTCATGCTCATAATCGATCGTTTGCTATGTACAACTGACTCGT
TTTTTGCTACGTACGAAAACTGGTTTGGCCAGCACAAAAATTATATTTTA
AAACCGTTTGTCCTATTTTCCTACGTGTTTTTTGTGTATGTCCAACCGTT
GTTTTTTACTGGTCGTCTTGTCCTACTTCAGTACATGCATATTTTGGACT
ACGGTGGAGGAGTGATGCTGTCTATGCAGGTGTGCGTCAATTCCAAAGTT
TAGCGGAAAAGGATGTTTCGGTTTGGGCGGGGGGGGGGGGGCTCTTACGT
GTACTGCACGAACCAGATGTGAACTTTTGCGGCGTTGTTTTAATTATTTA
ATATAGACGTTTTTTTACACATGGGATAAAGATCGATAAAGGCCGTCGCA
GATTTTGGAACATGACGATAACAGAACGAACGTACCCGGCACTTCCCCCC
CCTAAAACCTGGCCGAGTTGATTAGTGATAGAATGAGGTTGTAAACGCGT
CTTTGATTCTAGAATATGAACGTCCCCCCCCCCCCCCGAGTGTGGAGGGT
CTATGAAAGTGTTTTTCCTTCAACATGAAATCTTGGTCCGAGCTGTGATG
GGATAGATTCAGGTTTCACTCGTATAACAGAAGAAAGAAAATGGGAAATG
AAAGGTGAGACATTTCGAGCCGAGAGGGGAGTTGTATGCAGTTCGGTTCT
ACTTGACTCCCTAGTTATGCCGATGGATGCTGCGCCAACTAGAACGGCGT
ACAACTATATATTGACCACTCGAAGATGGCCAATTCTCGTTTGCGGGGGT
TAACAGGTACGGTCTCATGATTCGTAACAGGTTTTCACCCCCCCCAGATG
AATACGAACAGTAGGCGAATTCGCCACGAAAGTCTAAAAATTATTCTTCT
GAGTTTCAGAATGAGCGGACCGGCGGATACGTTTCGATTTTCGTGGCGAA
TATCCCAATTACGCGTATTCGTCTTGGCGGGGTGAATATTTTCCAAGAAG
TATATGGTAGTGTAGTCGAGCATCGTCCTCCTACCATGTTGCATGCTCTA
ACAACATTTGGGAACATTGCTCTCAACCATGTAAACGGCTCTTGACATCC
GATGTCGTCTCGTAGGAACGGTCTACTTGGAGCCAGGTATTTCGTATTCG
GACGGTGCCGCACGTACGTGGTAAAACGAACATGTTGTTTGATCCCCCAG
ACGGAATCCCAATGATTCCAGCGTTCGAGACGGAAATAGAGAATCGTTCG
TCTGGCTGTTCGGGGTGAGCACGTTTGCCTCGTCCGGAGTGGGCGTAAAA
ATTGGAACATGACACAGGGGTGCGGAGTTTTTCCCTCTCGTTTGTGCCGT
GGTCCATGTTGGTGTTGGACGTTCGCGTTATTTTAGGGGGCCCTGGTTGC
TAGGCGCATCCGCTTTGGAATCTTGCCTATCTTTGTTAAGTTCTGCTGTT
TTTGTTGTTGTTTTTGTGGATGCTTGTTTTCTCATGCTTTGTTGGTCAGG
CCCAACGGTTGGCCAATCAGTCGAAAGTCGACGAGCGGATCGTGAACAGG
CTGAACTGGGTGGCGAAGCAGTTCTTCCTCACGGCGTACCAATCCCTCCC
TGATGATCAGGTACTGTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7905:5626..10697-

>mRNA_H-paniculata_contig7905.15929.1 ID=mRNA_H-paniculata_contig7905.15929.1|Name=mRNA_H-paniculata_contig7905.15929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig7905:5626..10697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAACAAAACAGGTGAAAGCAGCGACAGCAACCATGATCAAGGAGGTGGT
GCCCATGGTGGCGGCGAGGCTTAAAGCCCTTCCCGAGACCCAGCAGAAAA
ACTTCGACCTTGCGATAGAGCTACATCGGCACGGAGTTAACATGCGGCAC
CTGGGGCTAGTGCGGGCTAACATTAAGGAGGGGGGGGAGCGGAACGCGAT
GTTGCGGGACATTATGCTGACGGAGATGGTGGCGAGGACCCTGAAGAATG
TTCTTCGAAGTTTCCAGAGGAAGTGGATGAAGCATCAGAGGTCGACGAGC
GAGCAGGGGATGAGATTGCTTGCGAACAAAACAGGTGAAAGCAGCGACAG
CAACCATGATCAAGGAGGTGGTGCCCATGGTGGCGGCGAGGCTTAAAGCC
CTTCCCGAGACCCAGCAGAAAAACTTCGACCTTGCGATAGAGCTACATCG
GCACGGAGTTAACATGCGGCACCTGGGGCTAGTGCGGGCTAACATTAAGG
AGGGGGGGGAGCGGAACGCGATGTTGCGGGACATTATGCTGACGGAGATG
GTGGCGAGGACCCTGAAGAATGTTCTTCGAAGTTTCCAGAGGAAGTGGAT
GAAGCATCAGAGGTCGACGAGCGAGCAGGGGATGAGATTGCTTGTGGTAA
ATTTCTTGAACCTGGTGACGGGTGCCAACAAAAATAGTGATAAGTTTTGG
CGAGATCATGTGGTGGTGGGGGTGCTGCAGCGGTTTGGGGTAACTGCTCT
CACGATGTCCGAAAGGCAGCACCTTCAAATTGAGATATCCCAGTCGAAGC
CCAACATCTTGAAGACTTGCGTGCTGAAGCTGACCGAGATGCAGTGGTAA
ATTTCTTGAACCTGGTGACGGGTGCCAACAAAAATAGTGATAAGTTTTGG
CGAGATCATGTGGTGGTGGGGGTGCTGCAGCGGTTTGGGGTAACTGCTCT
CACGATGTCCGAAAGGCAGCACCTTCAAATTGAGATATCCCAGTCGAAGC
CCAACATCTTGAAGACTTGCGTGCTGAAGCTGACCGAGATGCAGGGACTT
ATCCTGACGCCGGCGGCGGGGCGCCAGTTCGAGAGCGGTGAACATCCGAT
GTCGTTCGCTTTTGTTGTGGCGGATATACAGGAGATTCGACCCATAGTAC
GGGGACTTATCCTGACGCCGGCGGCGGGGCGCCAGTTCGAGAGCGGTGAA
CATCCGATGTCGTTCGCTTTTGTTGTGGCGGATATACAGGAGATTCGACC
CATAGTACGGTACATGCATATTTTGGACTACGGTGGAGGAGTGATGCTGT
CTATGCAGTACATGCATATTTTGGACTACGGTGGAGGAGTGATGCTGTCT
ATGCAGGCCCAACGGTTGGCCAATCAGTCGAAAGTCGACGAGCGGATCGT
GAACAGGCTGAACTGGGTGGCGAAGCAGTTCTTCCTCACGGCGTACCAAT
CCCTCCCTGATGATCAGGTACTGTTGTAGGCCCAACGGTTGGCCAATCAG
TCGAAAGTCGACGAGCGGATCGTGAACAGGCTGAACTGGGTGGCGAAGCA
GTTCTTCCTCACGGCGTACCAATCCCTCCCTGATGATCAGGTACTGTTGT
AG
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