mRNA_H-paniculata_contig7900.15927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7900.15927.1
Unique NamemRNA_H-paniculata_contig7900.15927.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7900.15927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7900contigH-paniculata_contig7900:6075..9421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.2794259-CDS-H-paniculata_contig7900:6074..61511622930984.2794259-CDS-H-paniculata_contig7900:6074..6151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7900 6075..6151 -
1691481538.5280876-CDS-H-paniculata_contig7900:6074..61511691481538.5280876-CDS-H-paniculata_contig7900:6074..6151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7900 6075..6151 -
1622930984.3121407-CDS-H-paniculata_contig7900:9276..94211622930984.3121407-CDS-H-paniculata_contig7900:9276..9421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7900 9277..9421 -
1691481538.5399733-CDS-H-paniculata_contig7900:9276..94211691481538.5399733-CDS-H-paniculata_contig7900:9276..9421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7900 9277..9421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7900.15927.1prot_H-paniculata_contig7900.15927.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7900 6075..9421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7900.15927.1

>prot_H-paniculata_contig7900.15927.1 ID=prot_H-paniculata_contig7900.15927.1|Name=mRNA_H-paniculata_contig7900.15927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
SEHYLLSAVQHFTCSAFSPECPSVTKVEVTSSASRHATEYARLLERVKGA
VIAWAAGFGKSTYTSHDFWNVIA*
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mRNA from alignment at H-paniculata_contig7900:6075..9421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7900.15927.1 ID=mRNA_H-paniculata_contig7900.15927.1|Name=mRNA_H-paniculata_contig7900.15927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3347bp|location=Sequence derived from alignment at H-paniculata_contig7900:6075..9421- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGAGCATTATCTATTATCGGCTGTACAGCACTTTACTTGTTCGGCTTT
TTCGCCCGAGTGTCCAAGTGTTACCAAGGTGGAGGTGACTAGCTCAGCAA
GTAGACACGCAACGGAGTACGCAAGGCTTCTAGAGAGAGTGAAAGGTAAG
GAGGTAATATGCTGTACTGATTGTACTGCTTGGTTCTGCGTGTGTCTTGG
AGCCTACTGTAATACTTGAGTGATACTAAACCGCCGTTGGTATTGTACAT
GGTACTTCGCTCTCTATAAAATTTTGAATATCCGCATCCTGTATTCTGTG
GGGCAGCCCTCAAAGCTTAGGTGTGTCTTTTGTGAGATGGACTCGATATT
GCGTTGCGATATATTGCGACACCTGAAGCTCTGTACGGTACATACTATGC
TAAAGTCGGTACCACATGTCCCATATCACAAAACGTATTGACCATACTTT
GGCTGCACTACAGCTACGCTTGTCTGTACACGACACTGTCCAGGCGGATG
TTGTAAACCAACCACAAAATTGCACCATCCAGTAGCTGCTTCAGCCAGCG
GGTGCCTACAGCACGCAAGGATGCAGATATACCTCTCCTGTGAGTATTTG
CGCCGTCCAGTAGCGCCTTTACTTTGTATCCTGTGCGATGTTCCATCGTC
CCAAACTGTGATAGTCTAAAGTGCACTCCATTATCGATGAGCTGGACAGG
AGTTTGCTTTTAGTCGACGGAGTGCTCTACTGGAATTGCAAACGGTGGCT
CTAGGGTATATCGTGCGGTTTGTACTGCACTTCAGGAAGGCCTATGACAG
AAGATGTTCAATACCGACTACGCTTGATGAACGACAGCAGCTTCAATTTA
TACGCACATATTGTCTGTAGGGAATTCTGCTTCTGCTGCTTCCTCACGTC
CAGTATCTGTGTACGTCCCCACCGCCGCAAGGCGTCGTTGATTTAGTGAA
TTTTGTCCTTACTCTTGTGTCAATAGTCGACGCGTGGTTGATCCCCGGTT
TAGCGGAGGGTACATACGACATCAAGTCTTGATAGAGGGGGTTGTACTGA
CCACCTTGGCGAGTTCTTATGAAGGCTCGTGGCGATGGTCTTTGTTGAGG
AGGTTGCCCGAGCCCCATGAGCAACGTGCGATTACATGTTGTGCGAGCTC
TGTTTTCTCCTGCTATTGTGCGTTGTGCCCCTGAAAGGTGATGGGCGTGG
TATGCGGTGTTATCCGTGCCAATATGATGAGTGATTAGACTTGGTCATGA
TGCACCTCCGTTTTCACGTCGTCCTTGAGCTGTGGGTTGTACTACACGAC
GTACGTGCCCACATCAGCCTCCGTAGTCGCGGGTATATCTGGAGGTGTCT
CAACAAACATGGACCATTAATGTAGCCTTGACTTCTTTTACTACCACGTC
TGGGGAGTTTCATGCCGGTGCTACAGCGTATTACAGGGCCCATTTTATTG
AGGGCCCGGGCGGCCCACGTTATCTCCGAGTAACAGTTGAGGCCCCCCCC
ATGGGCTTTTGTGCACACCCTACAACTTTTCGTTTTTGTTGCAGTCATCA
TTTATTGCATTTGAATTTTTATTGCCCTGTTGGCGTTACTCGTCCCATTA
GCAAGGCCATAATTTGACTTTTGGCAACTGGAAACGCGGCTTTCAGCTCA
CAATTACAGGATCAGGAGTCCTTGCTGATGTGTGGGTAACTTCCATACCC
GGACAGGGTCGAGCCGCCCTTGGAACACATCGCATGAGTTTTAGATAATC
TGAAATTAAATTCTGTTGTACGTCAAAAAGTGTTATCGGAGTTTTCGAAG
CGGCCGCTCTGCAAGCAGTAAATCACGAGGTTTGCTTCAGGCGTCGACCT
CTTCGTTCTAGCGTTCTAGCGTTCTAGCGTTCTAGCGATAGCAGCGGAGG
CGCCTGTCGAAAAGACTTCGGAGCACGACAAAGATGACCAATTAATAGAT
GATTCAGTCTCGATGGCGTGGTCCAGGCAGTGAACCATCGTCAACGATTG
CCTGGGGGAGCACCAAGCTCACTTCGTTGAAAAGCTGTTTCTTCCCTTGA
CCAAATCCACGAAAAAGCGAAGAATCGCCCTAGACCAACCCGAAGCTCGA
GCTGTCGTTACACCTCAACGTATGGAAGCACAGGACCTGTTCGGAAAGGC
GGCTGGAGTAAGGACGAGTCGACAGAGAAGGTCACACCGATCGGAATAAT
TCGTCGTTGAGAGAATCTTGACTGGGAGACTTACGAAACGGCGTCAGTGT
TCCGTATGAGTTCTAAAGACCCCCTATTTGTTTTTGGTAAAGAGATCATA
TATGTATTGATTACTTAATTTCCGATCGGATCCGAATCAGTGTCGGTTTT
TGTTACTTTTTGCAGTATGTTGCTCCTTGACTACATTTACTACACATACA
CGTAAGATTATCGTAAACAGAAGCTGATCAGAGTGTACATCAGAAGGTAA
CTAACTTTACAGGCGAACGCCACATTGTCGGTTGTAATGTTTCCTCACTA
AGGACACGAACCGCGGGATTGAGCGTTAAAAATTGAGCAGCCGTTTGGGA
TAAAGTTTGGAGTAGTTGGTCAACAGGAATTGACGGGCCAAAGGATGGAA
CCTGAATTTTAGCTCTTCTTGGTGAACATGTTGGTGTCCGAAAGCACGCT
AGGAAATGTTTTCCATCGAGCCTCTCATGAGAGCTTGTTTGCTTCACGAG
GTGCTGGTCTAGGAGCCATTGTAACAGAGAGCACAACAAAACCCAATTTA
TCTCGCATCGCGATCTTCCGTTTCGCTCGCCTCCTGTTCTGTCGTCTTGA
CAACATACCTTTCGTGGTGTGGTCTGATCGACATGTGAGCCCCCTCACTC
TTTTTCGTCATGGAACGTTGTAAATGTGTGATTTGTCACATTTTTAGTTT
GCTTGGCATTTTCAGCTTAATGTTCTTTCTTTTAGAGCCAAGTTGAGACC
CCGCATTCCCGGGACGACGTTGAGAGAATGTTAGTTTGACACAGCATCAA
ACTGATAATGGGAAACAAAAAGTACTGGAAAAGTAACGAAGCCGGTCAAG
TTTTATTTCATTCAAGTACCAAAAGCCGTGTCTAGGCAAACTTCCGGGGT
AGAGCGGTTGTTGTTACGGTCAATCTGGGCGTTGGTACTGTGTGACATGG
TGTGGGACAAAACGGTAGTATTCGGACGTAGATCGTACGGCGTGTACTCT
TCGCTGCTTGTTCCACGTCAGCGTGGGTTTATTGTTCTCTCACGCATTCG
TTTGCGGGTCATGTCAACAGGAGCCGTGATCGCGTGGGCAGCAGGCTTCG
GGAAATCGACATATACCAGTCACGATTTCTGGAATGTCATTGCCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7900:6075..9421-

>mRNA_H-paniculata_contig7900.15927.1 ID=mRNA_H-paniculata_contig7900.15927.1|Name=mRNA_H-paniculata_contig7900.15927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig7900:6075..9421- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGAGCATTATCTATTATCGGCTGTACAGCACTTTACTTGTTCGGCTTT
TTCGCCCGAGTGTCCAAGTGTTACCAAGGTGGAGGTGACTAGCTCAGCAA
GTAGACACGCAACGGAGTACGCAAGGCTTCTAGAGAGAGTGAAAGTCAGA
GCATTATCTATTATCGGCTGTACAGCACTTTACTTGTTCGGCTTTTTCGC
CCGAGTGTCCAAGTGTTACCAAGGTGGAGGTGACTAGCTCAGCAAGTAGA
CACGCAACGGAGTACGCAAGGCTTCTAGAGAGAGTGAAAGGAGCCGTGAT
CGCGTGGGCAGCAGGCTTCGGGAAATCGACATATACCAGTCACGATTTCT
GGAATGTCATTGCCTAGGAGCCGTGATCGCGTGGGCAGCAGGCTTCGGGA
AATCGACATATACCAGTCACGATTTCTGGAATGTCATTGCCTAG
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