mRNA_H-paniculata_contig78903.15911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78903.15911.1
Unique NamemRNA_H-paniculata_contig78903.15911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: UPI001430ADA4 (hypothetical protein n=1 Tax=Aeromonas veronii TaxID=654 RepID=UPI001430ADA4)

HSP 1 Score: 56.6 bits (135), Expect = 8.080e-8
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    F+ N++K     V LA    +   G G +++  Q    V    LT V H+P LSR+L S+GRF  D GP
Sbjct:   78 VWLVDSGATQHMTSSKKFMRNYKKISPVDVHLADDGVVQAIGRGDIVMKMQTPRGVKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 163
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BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H4L4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L4_PHYRM)

HSP 1 Score: 53.1 bits (126), Expect = 7.280e-7
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:    1 MWLVDSGATQHMTSSNKYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 86
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BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3HA20_PHYRM (CCHC-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA20_PHYRM)

HSP 1 Score: 54.7 bits (130), Expect = 1.250e-6
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G+G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:  170 MWLVDSGATQHMTSSKTYMRNYKKMAPVDVHLADDGVVQAVGIGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 255
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H7L8_PHYRM (CCHC-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7L8_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 2.220e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:   75 MWLVDSGATQHMTSSSKYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 160
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H7B9_PHYRM (CCHC-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7B9_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 2.970e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:  170 MWLVDSGATQHMTSSKTYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 255
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H905_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H905_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 3.290e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:   24 MWLVDSGATQHMTSSKTYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 109
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H640_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H640_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 3.320e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:  170 MWLVDSGATQHMTSSSKYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 255
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H7U8_PHYRM (CCHC-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U8_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 3.430e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:  790 MWLVDSGATQHMTSSKTYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 875
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3H9D2_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9D2_PHYRM)

HSP 1 Score: 53.1 bits (126), Expect = 4.460e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:  254 MWLVDSGATQHMTSSNKYMRNYKKMAPVDVHLADDGVVQAVGTGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 339
[Close]
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Match: H3GUW4_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUW4_PHYRM)

HSP 1 Score: 53.1 bits (126), Expect = 4.480e-6
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 IWLCDNGATKYMTHDPDFLCNFEKCRG-HVRLAGGNYLPIEGVGILLIYFQFDSKVVLMKLTQVAHVPLLSRHLLSLGRFA-DSGP 252
            +WL D+GAT++MT    ++ N++K     V LA    +   G G +++  +    +    LT V H+P LSR+L S+GRF  D GP
Sbjct:    1 MWLVDSGATQHMTSSNKYMRNYKKMAPVDVHLADDGVVQAVGAGDIVMSMKTPRGMKKGVLTNVWHIPKLSRNLFSVGRFTKDVGP 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78903.15911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001430ADA48.080e-839.53hypothetical protein n=1 Tax=Aeromonas veronii Tax... [more]
H3H4L4_PHYRM7.280e-736.05Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3HA20_PHYRM1.250e-636.05CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
H3H7L8_PHYRM2.220e-636.05CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
H3H7B9_PHYRM2.970e-636.05CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
H3H905_PHYRM3.290e-636.05Integrase catalytic domain-containing protein n=1 ... [more]
H3H640_PHYRM3.320e-636.05Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H7U8_PHYRM3.430e-636.05CCHC-type domain-containing protein n=3 Tax=Phytop... [more]
H3H9D2_PHYRM4.460e-636.05CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3GUW4_PHYRM4.480e-636.05Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78903contigH-paniculata_contig78903:244..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.5838778-CDS-H-paniculata_contig78903:243..5191622930981.5838778-CDS-H-paniculata_contig78903:243..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78903 244..519 +
1691481537.3035123-CDS-H-paniculata_contig78903:243..5191691481537.3035123-CDS-H-paniculata_contig78903:243..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78903 244..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78903.15911.1prot_H-paniculata_contig78903.15911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78903 244..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78903.15911.1

>prot_H-paniculata_contig78903.15911.1 ID=prot_H-paniculata_contig78903.15911.1|Name=mRNA_H-paniculata_contig78903.15911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
IWLCDNGATKYMTHDPDFLCNFEKCRGHVRLAGGNYLPIEGVGILLIYFQ
FDSKVVLMKLTQVAHVPLLSRHLLSLGRFADSGPEYTCSREG
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mRNA from alignment at H-paniculata_contig78903:244..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78903.15911.1 ID=mRNA_H-paniculata_contig78903.15911.1|Name=mRNA_H-paniculata_contig78903.15911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig78903:244..519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGTTATGTGATAATGGGGCAACGAAGTACATGACTCATGACCCTGA
TTTTCTTTGTAATTTCGAGAAATGTAGGGGGCATGTTCGTCTCGCTGGTG
GTAATTATCTCCCTATCGAAGGAGTTGGAATTTTGTTGATCTACTTTCAA
TTTGATTCTAAAGTAGTATTGATGAAATTAACTCAAGTTGCTCACGTACC
GCTTCTGAGTCGTCACCTCCTATCTCTCGGTAGATTCGCGGACTCTGGTC
CTGAATATACGTGCTCCCGTGAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig78903:244..519+

>mRNA_H-paniculata_contig78903.15911.1 ID=mRNA_H-paniculata_contig78903.15911.1|Name=mRNA_H-paniculata_contig78903.15911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig78903:244..519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGTTATGTGATAATGGGGCAACGAAGTACATGACTCATGACCCTGA
TTTTCTTTGTAATTTCGAGAAATGTAGGGGGCATGTTCGTCTCGCTGGTG
GTAATTATCTCCCTATCGAAGGAGTTGGAATTTTGTTGATCTACTTTCAA
TTTGATTCTAAAGTAGTATTGATGAAATTAACTCAAGTTGCTCACGTACC
GCTTCTGAGTCGTCACCTCCTATCTCTCGGTAGATTCGCGGACTCTGGTC
CTGAATATACGTGCTCCCGTGAAGGGATCTGGTTATGTGATAATGGGGCA
ACGAAGTACATGACTCATGACCCTGATTTTCTTTGTAATTTCGAGAAATG
TAGGGGGCATGTTCGTCTCGCTGGTGGTAATTATCTCCCTATCGAAGGAG
TTGGAATTTTGTTGATCTACTTTCAATTTGATTCTAAAGTAGTATTGATG
AAATTAACTCAAGTTGCTCACGTACCGCTTCTGAGTCGTCACCTCCTATC
TCTCGGTAGATTCGCGGACTCTGGTCCTGAATATACGTGCTCCCGTGAAG
GG
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