mRNA_H-paniculata_contig7880.15901.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7880.15901.1
Unique NamemRNA_H-paniculata_contig7880.15901.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7880.15901.1 vs. uniprot
Match: A0A6H5KBJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.450e-9
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:  196 SSEAPEGGALFDRW*IRPIGAKCPRIRHRSQ*PPTSRHQSTWQALKSADPARIPREFLKARAGPSDATDVSEFGTGYRPMHYAAYGGFLDVCNVAAHA 489
            ++EA  GG+  +   +  +  +  + R R+    T  H + W+     D A + +EFL+     ++A DV+EFGTGYRP+HYAAYGGFL VC  A HA
Sbjct:  109 NNEASGGGSSGNAEKVSRLSERARQARRRAG---TDIHTAAWRG----DLALV-QEFLEDDPRLANAADVTEFGTGYRPLHYAAYGGFLGVCE-ALHA 197
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BLAST of mRNA_H-paniculata_contig7880.15901.1 vs. uniprot
Match: D7FR62_ECTSI (Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR62_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.030e-7
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  361 EFLKARAGPSDATDVSEFGTGYRPMHYAAYGGFLDVCNVAAHA 489
            +FL+     ++A DV+EFGTGYRP+HYAAYGGFL VC  A HA
Sbjct:   28 DFLEDDPSLANAADVTEFGTGYRPLHYAAYGGFLGVCE-ALHA 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7880.15901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBJ1_9PHAE3.450e-939.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR62_ECTSI6.030e-762.79Chain D, Drug Export Pathway Of Multidrug Exporter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7880contigH-paniculata_contig7880:6962..9891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size501
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7880.15901.1prot_H-paniculata_contig7880.15901.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7880 7092..9775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.2743475-UTR-H-paniculata_contig7880:6961..70911622930980.2743475-UTR-H-paniculata_contig7880:6961..7091Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7880 6962..7091 -
1691481536.7015605-UTR-H-paniculata_contig7880:6961..70911691481536.7015605-UTR-H-paniculata_contig7880:6961..7091Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7880 6962..7091 -
1622930980.338246-UTR-H-paniculata_contig7880:9775..98911622930980.338246-UTR-H-paniculata_contig7880:9775..9891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7880 9776..9891 -
1691481536.7487593-UTR-H-paniculata_contig7880:9775..98911691481536.7487593-UTR-H-paniculata_contig7880:9775..9891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7880 9776..9891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.289656-CDS-H-paniculata_contig7880:7091..71011622930980.289656-CDS-H-paniculata_contig7880:7091..7101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7880 7092..7101 -
1691481536.7146957-CDS-H-paniculata_contig7880:7091..71011691481536.7146957-CDS-H-paniculata_contig7880:7091..7101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7880 7092..7101 -
1622930980.3067405-CDS-H-paniculata_contig7880:9266..93461622930980.3067405-CDS-H-paniculata_contig7880:9266..9346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7880 9267..9346 -
1691481536.7283986-CDS-H-paniculata_contig7880:9266..93461691481536.7283986-CDS-H-paniculata_contig7880:9266..9346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7880 9267..9346 -
1622930980.3242753-CDS-H-paniculata_contig7880:9610..97751622930980.3242753-CDS-H-paniculata_contig7880:9610..9775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7880 9611..9775 -
1691481536.7378178-CDS-H-paniculata_contig7880:9610..97751691481536.7378178-CDS-H-paniculata_contig7880:9610..9775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7880 9611..9775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7880.15901.1

>prot_H-paniculata_contig7880.15901.1 ID=prot_H-paniculata_contig7880.15901.1|Name=mRNA_H-paniculata_contig7880.15901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MVAVAGFAMHSLSLSASRLVWRHVAALQRSTGRGGAVRSMVNSTHWCQMS
ADQTQEPVTPDFTTPVDVASIKISRPSKDPQRVS*
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mRNA from alignment at H-paniculata_contig7880:6962..9891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7880.15901.1 ID=mRNA_H-paniculata_contig7880.15901.1|Name=mRNA_H-paniculata_contig7880.15901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2930bp|location=Sequence derived from alignment at H-paniculata_contig7880:6962..9891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACTTCTACATAACCTCCTTCTGTTGTCAGACAGATATTACTTCCAA
CACTCCAGTACATACAGACCAGCTTGCTCCACGCCACTGCATCACTTTTG
CGCTCTATTCTTATTCATGGTGGCGGTTGCCGGCTTTGCCATGCATTCAC
TCTCGCTGTCAGCCTCGCGTTTGGTATGGCGGCATGTGGCGGCTCTCCAG
CGAAGCACCGGAAGGGGGGGCGCTGTTCGATCGATGGTAAATTCGACCCA
TTGGTGCCAAATGTCCGCGGATCAGACACAGGTAATACAGTCTGGCTCCG
TTGACTCGTGTGTGTTCTACACGTATTCGTCTAGTGTGAGCCGTGAATGA
ACTTGGAAACTTGCGCTAGCCACACCTACATGTGACCATGTTTGATCCTG
TTGAACACAAAGCGGAATCATGGCCGTTATGGGAGTGAGAGATGACAACA
TTACTAACCAGTACATCCAAGCCTGGAAGGAACAATGCGAAGGTTTTTGC
TGTGATGTGACATCACGTTGTACTTTCGGCGTTCTCGTGAAGCAGGAGCC
AGTAACCCCCGACTTCACGACACCAGTCGACGTGGCAAGCATTAAAATCA
GCAGACCCAGCAAGGATCCCCAGAGGTGAGTCGCTATGTCGCTATGATGT
GATGACATCTCAGTCAAGTCTTACAGTGGGGTGTAGAAGTGCCACCTAGG
CTTGCGTGTAAGCTCGCCTGTAAGACTGAGCACCGACGTAACTGTTGCTG
CAATGAAAATTGAATTTTGTATTTCTATTCACCAGTTATTTCCCCTTGGC
AATGTTCTAGCCGGTCCAGCCTGCTACCCATCGTATCACTTCAACAAAAA
GTAGATCTTTGCGTAGGGACGTAGGTACTCTGGTAACCACCTGGGATAAA
CTAACTGACTGACATAACGAAGTACCTAACTAAAATATCTCAACGCTCGA
CCGATTACCCGATTGCCCGGTTGCCCGAACAAATGAATATAAAAAATATT
GAATGTTTCACGACAGGCAGTCGATTCGATTGTCTGCTGTGGCTCAGTCT
TGTCTATGTTGTACTACAGTTGTACTGTAATGTTGGGTTGGTTACCACCC
AACGTTAAACTCCCCAATACTGGATTGAATCTATCATCGGCGTTTTTTTT
TGCTGTCGAGGAGGCAGTAGTTGTACAGTAGACAGTAGAGCTGTAGAGCT
TACCTGTGGGTTCTCGCCGTCAAAAACCCACGGTTGACCTAGTACATCGT
AATTCGTTCTTACTAGTGTTGTGCACCCGCCCGAATCATCTACAACATCC
ATTTTGGTTGTTGCGGCGCCGCCGAGCCAAGTAGCGCAGCGTTTGGACCG
TTGATAATTTCAGACGCCATCACCCAGAGGGTTAATTTTGAACGAGAATA
AGTTGCAAGGGTCAGAGGGTATGGTACCTGGCGCGGGGGGTTGGTGTTAT
GGCTACGGTGTGTGGCCGGGGAGCGAGTCCACAAAGCAACATAAATCAAC
CATGGGTTTTGACGTTGCACTGGGGCGCTGTATTACGATGGTAAACCTGC
CTCCAAGTTAAGATATTTAGTATATATCTTTGTACGCTAGTTGTGCTCCG
TCTTTCAAATTCTCGAGAGGTGATCGGCTGCCTGGGTGTGTGAAACTTAT
CACAGAAAGCCGAGATCACATTATTGTGGTAAATAGCACTTGAGGTTGTG
AATTAAGAGTCCCCCAGCTCATGCGGCAATCGCCTAGCCCGCCACCTCGC
GCGTGTACAACGTACCTGACCTGACTGCTCACTGCAAGTTGTATGATACA
GGGTACGTCTCGTAACATAAACTTTCTACTGAAGTCAAAACGAGCAATCT
TATGCGCGGTCATTCATTCATCGCTTCACCCTGATACCAATTAAGACGTG
GGCTCCTGCGGCGCTTCTCACGTTTTATTTAATATTTTCAGCAACGCTCT
TACTGTGCAGTACGTCTAGAAACGCAAGGTATCCAACCACACTATATGTG
TCTGATAATTTTACACAAAGTACGTAATCTCTTGAGAAATATTTTCTACA
AAACGTAGCGACACGTTGCCTTGAATACGGAGGCATCGTTTCTTTTTAAC
TTTTGGACGGAGCGAACCAGGAGAAGATGTGATGTTTTTTCTATCTTAGA
GCGAGGGAGTCTTGACACTACTGACTACTGACCATCCTGTACGGTATTTA
TGTAATTGTATAACAGTACCATCAGCATAGCTAAGGCTATACCAGCACGT
ACATGCATGTTTGGTTTCTCGCACATGAATGCCTGTACCGATTCAAGAGA
CCAGAAGACTTGATAAACGCCATATTTAAGGGACAGATTTCAGCTTGGCC
CATTTGAGACGATTTTGAGAAACTTCGGTCCCTATGTTGACAGATACAAA
ATCGAAACGGAGACGAAATCGGAAATGGTTTCATTTTCGTCTTTCGTCTT
CGCTCTCCCTGTTTGTGTCCGGAGGCTCGAGAGAAAATATGACGTAAGAA
AAGCCTGACAACATCAGAACACAACAAAAATCAACTTCACCTGGCTCAAG
ATTCGCCGCAAGAGCTGCGCTTCCAGCGAAATAATGCTTGATAGCCCGAA
GAGTAGCTCATAGTCAACCACGTACGGTGCAACCTTGCTTGGTGTACGAT
ATTTCGACGCACGAAACTTGGACTGCTGGTCTGCGATCAATCGTCGTGGC
CTATACGCATAATAATTACGGGTTGAACCCACAACACAAATATAGCCCAA
TTCCCGCCCCACACTCTACCGCCGACGTCTTGTCCCGTAGAGTTTCTTAA
AGCACGAGCCGGACCTAGCGATGCGACCGATGTATCTGAATTTGGCACAG
GCTATCGACCGATGCACTACGCCGCATACGGGGGGTTCTTGGACGTATGC
AATGTGGCGGCACATGCGCACATGGACGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig7880:6962..9891-

>mRNA_H-paniculata_contig7880.15901.1 ID=mRNA_H-paniculata_contig7880.15901.1|Name=mRNA_H-paniculata_contig7880.15901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig7880:6962..9891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCGGTTGCCGGCTTTGCCATGCATTCACTCTCGCTGTCAGCCTC
GCGTTTGGTATGGCGGCATGTGGCGGCTCTCCAGCGAAGCACCGGAAGGG
GGGGCGCTGTTCGATCGATGGTAAATTCGACCCATTGGTGCCAAATGTCC
GCGGATCAGACACAGATGGTGGCGGTTGCCGGCTTTGCCATGCATTCACT
CTCGCTGTCAGCCTCGCGTTTGGTATGGCGGCATGTGGCGGCTCTCCAGC
GAAGCACCGGAAGGGGGGGCGCTGTTCGATCGATGGTAAATTCGACCCAT
TGGTGCCAAATGTCCGCGGATCAGACACAGGAGCCAGTAACCCCCGACTT
CACGACACCAGTCGACGTGGCAAGCATTAAAATCAGCAGACCCAGCAAGG
ATCCCCAGAGGAGCCAGTAACCCCCGACTTCACGACACCAGTCGACGTGG
CAAGCATTAAAATCAGCAGACCCAGCAAGGATCCCCAGAGAGTTTCTTAA
AGTTTCTTAA
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