mRNA_H-paniculata_contig78758.15895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78758.15895.1
Unique NamemRNA_H-paniculata_contig78758.15895.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig78758.15895.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.060e-16
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 HVYQAAKAATKAAFQHHLEQVKKLNPKAAEKLEGTPHHTWANYACRDNVIQGQTTSNSSEAVNNMI 198
            HVYQAA+AATKA F HH+ +V+KLNPKA  +L    H+TWANYACR NVI  Q+ SN +E+VN+++
Sbjct:  339 HVYQAAQAATKALFDHHMNEVEKLNPKAFIELNKREHNTWANYACRKNVIWEQSGSNMAESVNSLV 404
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BLAST of mRNA_H-paniculata_contig78758.15895.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-11
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   52 LEQVKKLNPKAAEKLEGTPHHTWANYACRDNVIQGQTTSNSSEAVNNMI 198
            + +V+ LNP A +KL  TPH+TWANYAC++NVI  QTTSN SE++N +I
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLI 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78758.15895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4I0_9PHAE2.060e-1660.61SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA84_9PHAE2.110e-1159.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78758contigH-paniculata_contig78758:161..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.5052314-CDS-H-paniculata_contig78758:160..3581622930979.5052314-CDS-H-paniculata_contig78758:160..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78758 161..358 -
1691481536.3495839-CDS-H-paniculata_contig78758:160..3581691481536.3495839-CDS-H-paniculata_contig78758:160..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78758 161..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78758.15895.1prot_H-paniculata_contig78758.15895.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78758 161..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78758.15895.1

>prot_H-paniculata_contig78758.15895.1 ID=prot_H-paniculata_contig78758.15895.1|Name=mRNA_H-paniculata_contig78758.15895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
HVYQAAKAATKAAFQHHLEQVKKLNPKAAEKLEGTPHHTWANYACRDNVI
QGQTTSNSSEAVNNMI
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mRNA from alignment at H-paniculata_contig78758:161..358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78758.15895.1 ID=mRNA_H-paniculata_contig78758.15895.1|Name=mRNA_H-paniculata_contig78758.15895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig78758:161..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGTCTACCAAGCAGCGAAGGCGGCCACCAAGGCTGCTTTCCAGCACCA
TTTGGAGCAAGTCAAGAAGCTCAACCCCAAGGCCGCGGAGAAGCTAGAGG
GGACCCCGCACCACACATGGGCCAACTACGCGTGTCGGGACAACGTCATC
CAAGGCCAGACCACCTCTAACTCTTCGGAGGCGGTCAACAACATGATC
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Coding sequence (CDS) from alignment at H-paniculata_contig78758:161..358-

>mRNA_H-paniculata_contig78758.15895.1 ID=mRNA_H-paniculata_contig78758.15895.1|Name=mRNA_H-paniculata_contig78758.15895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig78758:161..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGTCTACCAAGCAGCGAAGGCGGCCACCAAGGCTGCTTTCCAGCACCA
TTTGGAGCAAGTCAAGAAGCTCAACCCCAAGGCCGCGGAGAAGCTAGAGG
GGACCCCGCACCACACATGGGCCAACTACGCGTGTCGGGACAACGTCATC
CAAGGCCAGACCACCTCTAACTCTTCGGAGGCGGTCAACAACATGATCCA
TGTCTACCAAGCAGCGAAGGCGGCCACCAAGGCTGCTTTCCAGCACCATT
TGGAGCAAGTCAAGAAGCTCAACCCCAAGGCCGCGGAGAAGCTAGAGGGG
ACCCCGCACCACACATGGGCCAACTACGCGTGTCGGGACAACGTCATCCA
AGGCCAGACCACCTCTAACTCTTCGGAGGCGGTCAACAACATGATC
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