mRNA_H-paniculata_contig7853.15879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7853.15879.1
Unique NamemRNA_H-paniculata_contig7853.15879.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.110e-36
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    4 KREVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGAQA 237
            ++  VR LV +G+LSF+NGGWVMHDEA AHYVGMVDQTHLGHSFLR +FGE+ALP VAWQIDPFGHSATQASLLGAQA
Sbjct:   99 RKASVRHLVSQGRLSFINGGWVMHDEAAAHYVGMVDQTHLGHSFLREEFGEEALPRVAWQIDPFGHSATQASLLGAQA 176          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: I2CPA4_NANGC (Lysosomal alpha-mannosidase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPA4_NANGC)

HSP 1 Score: 114 bits (286), Expect = 1.980e-28
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 QKREVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLL 225
            +++E VR+LV E +L F NGGW MHDEATAHYVGM+DQT LGH FL   FGE  LP V WQ+DPFGHSATQASLL
Sbjct:  132 ERQEQVRKLVEEERLVFTNGGWSMHDEATAHYVGMIDQTTLGHRFLASTFGEKYLPRVGWQVDPFGHSATQASLL 206          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A7S1TQE3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQE3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.860e-27
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    4 KREVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLL 225
            +++ VR LV++G+L+F NGGW MHDEAT HYVGM+DQT LGH FL+ +FG    P V WQ+DPFGHSATQASLL
Sbjct:   85 EKDEVRSLVKDGRLTFANGGWCMHDEATTHYVGMLDQTTLGHRFLKKEFG--FAPRVGWQLDPFGHSATQASLL 156          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A7S1BNU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNU9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.220e-27
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    7 REVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGA 231
            ++VV+ LV+ GQL F NGGW MHDEATAHY+GM+DQT LGH+FLR  F  D +PTV WQIDPFGHSATQASL  A
Sbjct:  156 KDVVKDLVQRGQLHFANGGWCMHDEATAHYIGMIDQTTLGHAFLRHNF--DFVPTVGWQIDPFGHSATQASLSSA 228          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A1Y1IL54_KLENI (Glyco_hydro_38N domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IL54_KLENI)

HSP 1 Score: 104 bits (260), Expect = 2.080e-26
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    7 REVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGAQ 234
            R +VRRLV +GQL FVNGGW MHDEAT H+V M+DQT LGH ++R QF  +  P V WQIDPFGHS+ QASL+ A+
Sbjct:   49 RALVRRLVDDGQLEFVNGGWCMHDEATTHFVDMIDQTALGHRYIREQF--EKYPRVGWQIDPFGHSSVQASLMTAE 122          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A2P6TGY9_CHLSO (Alpha-mannosidase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGY9_CHLSO)

HSP 1 Score: 109 bits (273), Expect = 4.360e-26
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    7 REVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGAQ 234
            R +V RLV++GQL FVNGG+V HDEATAHYV M+DQT  GHSFL+  FG  A+P V WQIDPFGHS+TQA LL AQ
Sbjct:  117 RALVTRLVQDGQLEFVNGGYVQHDEATAHYVAMIDQTTRGHSFLKRTFG--AIPRVGWQIDPFGHSSTQAGLLSAQ 190          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A7S1NRS5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRS5_9EUGL)

HSP 1 Score: 105 bits (262), Expect = 4.400e-26
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 QKREVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGAQ 234
            Q R + +RLV  GQL F NGGW MHDEA AHY+ MVDQT  GH FL  +FG  A+P V WQ+DPFGHSATQA+LL A+
Sbjct:  115 QVRTLTKRLVAAGQLQFTNGGWCMHDEAAAHYIDMVDQTTYGHRFLLQEFG--AVPRVGWQLDPFGHSATQAALLSAE 190          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A7S4AT45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AT45_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.010e-25
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    7 REVVRRLVREG-QLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLL 225
            +E VR+LV+E  QL+F NGGW MHDEA  HY+GM+DQT LGH FL+  FG   +PTV WQ+DPFGHS+TQASLL
Sbjct:   69 KERVRQLVQETKQLTFANGGWCMHDEAATHYMGMIDQTTLGHDFLKKMFGY--VPTVGWQLDPFGHSSTQASLL 140          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A7S2WUY8_9STRA (Alpha-mannosidase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUY8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.110e-25
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    7 REVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGAQA 237
            +E VR LV+ GQL FVNGGW MHDEAT HYV MVDQT LGHSFLR +F  D  P   WQIDPFGHS+TQA+LL  +A
Sbjct:  122 QERVRHLVKRGQLDFVNGGWCMHDEATTHYVAMVDQTTLGHSFLRREF--DFKPRAGWQIDPFGHSSTQAALLSYEA 196          
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Match: A0A388JV10_CHABU (Alpha-mannosidase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JV10_CHABU)

HSP 1 Score: 107 bits (268), Expect = 2.060e-25
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    7 REVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQFGEDALPTVAWQIDPFGHSATQASLLGAQA 237
            + +VRRLV  GQL F+NGGW MHDEA+ HYV MVDQT LGH +++ QF  DA+P + WQIDPFGHS+ QASLL A+A
Sbjct:  131 QSLVRRLVDRGQLEFLNGGWCMHDEASTHYVDMVDQTTLGHRYIKSQF--DAVPRIGWQIDPFGHSSVQASLLSAEA 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7853.15879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT1_ECTSI6.110e-3682.05Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus T... [more]
I2CPA4_NANGC1.980e-2870.67Lysosomal alpha-mannosidase (Fragment) n=1 Tax=Nan... [more]
A0A7S1TQE3_9STRA1.860e-2766.22Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S1BNU9_9STRA2.220e-2770.67Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1Y1IL54_KLENI2.080e-2664.47Glyco_hydro_38N domain-containing protein n=1 Tax=... [more]
A0A2P6TGY9_CHLSO4.360e-2669.74Alpha-mannosidase n=1 Tax=Chlorella sorokiniana Ta... [more]
A0A7S1NRS5_9EUGL4.400e-2664.10Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4AT45_9STRA1.010e-2566.22Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2WUY8_9STRA1.110e-2568.83Alpha-mannosidase n=1 Tax=Rhizochromulina marina T... [more]
A0A388JV10_CHABU2.060e-2564.94Alpha-mannosidase n=1 Tax=Chara braunii TaxID=6933... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7853contigH-paniculata_contig7853:485..1192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D7FJT1
KEGG koko:K01191,ko:K12311
KEGG ReactionR08717,R08718
KEGG Pathwayko00511,ko04142,map00511,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.mannose metabolic process
EggNOG OGsKOG1959@1,KOG1959@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons2
Model size253
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.3844461-CDS-H-paniculata_contig7853:484..5461622930977.3844461-CDS-H-paniculata_contig7853:484..546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7853 485..546 +
1691481535.470446-CDS-H-paniculata_contig7853:484..5461691481535.470446-CDS-H-paniculata_contig7853:484..546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7853 485..546 +
1622930977.3981323-CDS-H-paniculata_contig7853:1001..11911622930977.3981323-CDS-H-paniculata_contig7853:1001..1191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7853 1002..1191 +
1691481535.4822206-CDS-H-paniculata_contig7853:1001..11911691481535.4822206-CDS-H-paniculata_contig7853:1001..1191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7853 1002..1191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7853.15879.1prot_H-paniculata_contig7853.15879.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7853 485..1191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7853.15879.1

>prot_H-paniculata_contig7853.15879.1 ID=prot_H-paniculata_contig7853.15879.1|Name=mRNA_H-paniculata_contig7853.15879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
QKREVVRRLVREGQLSFVNGGWVMHDEATAHYVGMVDQTHLGHSFLRLQF
GEDALPTVAWQIDPFGHSATQASLLGAQASKRAK
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mRNA from alignment at H-paniculata_contig7853:485..1192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7853.15879.1 ID=mRNA_H-paniculata_contig7853.15879.1|Name=mRNA_H-paniculata_contig7853.15879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at H-paniculata_contig7853:485..1192+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGCGAGAAGTCGTGCGCAGGCTGGTGAGGGAGGGCCAGCTATCCTT TGTCAATGGCGGGTGAGGGAAACGTCCCTGGACTCGACGGTAGGCTTCTC GATAAGAGCTACTCCTCGAGCGTTTACTACCGTTGTTGCACATGTTTCGT GTATAAAGACTGCGTTAAAGGTTTCAGGGTGCGCATGTGTCACTTATAAA GAGTCGCGGAAAGAAGGTGATCATTTGGCTGGTTTTAGAAGATGGAAAAT GACCTGAACACACGAGAGGTGAGGTAGCCATAACGCAAAACATGTTTGGA ATGGGCAAATGGCAACGTGGGAAAGAGCGAGTAGATAATGGAAATCACTC CGATAGTAAAAAAGCTCCCGTCCTCCCGAGGACTATATGCGTGGTCAAAG AGCCCAACAACAACCGACATGTAAAATATGAGTACCCGCCACCTCCCCTC CCTCCTGTGCCCAGGTACCCAAACGTCCTTGCCACCTTCGCCTTGAACGC ACACGGCACCACAACAGGTGGGTGATGCATGACGAGGCAACGGCTCACTA CGTAGGGATGGTGGACCAAACTCACCTAGGACACTCCTTTCTCCGCCTTC AATTCGGGGAAGATGCGTTGCCCACCGTGGCTTGGCAGATCGACCCCTTC GGCCACTCCGCTACTCAGGCCTCGCTCTTGGGCGCCCAGGCGAGCAAGCG AGCAAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7853:485..1192+

>mRNA_H-paniculata_contig7853.15879.1 ID=mRNA_H-paniculata_contig7853.15879.1|Name=mRNA_H-paniculata_contig7853.15879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig7853:485..1192+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGCGAGAAGTCGTGCGCAGGCTGGTGAGGGAGGGCCAGCTATCCTT
TGTCAATGGCGGCAGAAGCGAGAAGTCGTGCGCAGGCTGGTGAGGGAGGG
CCAGCTATCCTTTGTCAATGGCGGGTGGGTGATGCATGACGAGGCAACGG
CTCACTACGTAGGGATGGTGGACCAAACTCACCTAGGACACTCCTTTCTC
CGCCTTCAATTCGGGGAAGATGCGTTGCCCACCGTGGCTTGGCAGATCGA
CCCCTTCGGCCACTCCGCTACTCAGGCCTCGCTCTTGGGCGCCCAGGCGA
GCAAGCGAGCAAAGGTGGGTGATGCATGACGAGGCAACGGCTCACTACGT
AGGGATGGTGGACCAAACTCACCTAGGACACTCCTTTCTCCGCCTTCAAT
TCGGGGAAGATGCGTTGCCCACCGTGGCTTGGCAGATCGACCCCTTCGGC
CACTCCGCTACTCAGGCCTCGCTCTTGGGCGCCCAGGCGAGCAAGCGAGC
AAAG
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