mRNA_H-paniculata_contig785.15874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig785.15874.1
Unique NamemRNA_H-paniculata_contig785.15874.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: D7G1W9_ECTSI (Ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W9_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 6.030e-100
Identity = 213/460 (46.30%), Postives = 258/460 (56.09%), Query Frame = 1
Query:   46 MGWSVTKHGVNANGEGKR-AIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSR---IAGKKISCSICDV----DVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKYTSPGKSEQISSEAETRSTTAQENHHTSLTANNERVAGSVQVEQNFSTTSWPNTKDRATTEDRTASTKEDHKDG-MREKGLEREKRDDTATAAAAAENDGGESVIQGQDAPVEVESGQGYGGGSEGDGRD------------ERG-SKRSLEWFFRWLEEGGRDAGALWREVENLVVKTLASAQPSLAQAYRSCFCGETR 1359
            MGWS+++     + EG   A G  WD++WTDTSVSLQRVM MRG QKINHFPGM  I RKG+LAR L RMQ     REFPE+Y+F PRTW+LP+DLADFK       E +++++R     GKK      +V    D      +N  K  R  R YYIVKP+ GCQGK IFLTS WKR + ++++  VAQ YV+NPLLIDG+K DLR+YVLV S  PL VM+H+ GLVRLCT  YR PR  NLRN RMHLTNYAINK S  +  P             +  A     T  T                              ED      E H    +  K LE   +D  +     A ++GG S      +    + G G+  G   DG D            +RG SKRSLEWFF WLEEGGRD+ ALWREV +LVVKTL +AQPSL +AY +CFCGE R
Sbjct:    1 MGWSISEGNKGRSEEGGSVAGGGRWDVYWTDTSVSLQRVMRMRGLQKINHFPGMCAICRKGDLARSLSRMQ-----REFPEEYAFSPRTWVLPADLADFK------EEILTVNARGIKKKGKKPRTRKNNVKGDDDNDGDDDVNSRKNGRAKRGYYIVKPIGGCQGKDIFLTSGWKRVSTANQEPAVAQRYVSNPLLIDGYKCDLRVYVLVTSVCPLRVMLHKRGLVRLCTSTYRPPRNGNLRNTRMHLTNYAINKGSENFVPP-------------TGAAGPLPRTETTXXXXXXXXXXXXXXXXXXXXXXXCAQAVAEED------EIHVHHVLMSKTLEN--KDVPSLRGHNARSNGGSS------SDATPDGGYGWTKGCTSDGDDGIPRGGDRKEEGKRGASKRSLEWFFGWLEEGGRDSAALWREVADLVVKTLITAQPSLERAYCACFCGEVR 422          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A0L0DV92_THETB (Tubulin polyglutamylase TTLL13 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DV92_THETB)

HSP 1 Score: 203 bits (516), Expect = 1.080e-53
Identity = 116/266 (43.61%), Postives = 147/266 (55.26%), Query Frame = 1
Query:    7 QCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            QCKY VV+ C  ++GW V +               EWD++W D++  LQ +  M+ FQ+INHFPGMH I RK  LAR L RMQ     R+FP+ ++FFP+TWILP+D  DFK                              FR         +R  +P  I KP    QGKGIFLT T       + D  VAQ+YV NPLLIDG+KFDLRIYVLV S DPL + I+  GLVRLCT KY  P  K+L +   HLTNY++NK++  +
Sbjct:  175 QCKYEVVRACVAELGWHVQESNA----------AREWDVYWIDSTAPLQILSTMKPFQRINHFPGMHEICRKDSLARNLTRMQ-----RKFPDAFTFFPKTWILPADYGDFKAH----------------------------FR---------KRSAKPL-ICKPENSAQGKGIFLTHTGDEIG--AFDHYVAQVYVNNPLLIDGYKFDLRIYVLVTSADPLRIFIYDDGLVRLCTEKYSQPTSKSLGSAFQHLTNYSVNKKNTNF 385          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A7K9VKX0_ANSSE (TTL13 polyglutamylase (Fragment) n=7 Tax=Neognathae TaxID=8825 RepID=A0A7K9VKX0_ANSSE)

HSP 1 Score: 190 bits (483), Expect = 9.330e-53
Identity = 112/265 (42.26%), Postives = 145/265 (54.72%), Query Frame = 1
Query:    1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRS 795
            L  CKY  V+  A+         G+   GE +     EW ++WTD +VSL+RVM M+ FQKINHFPGM  I RK  LAR L RM      R FPE+Y+ FPRTW LP+D  DF+                                       +++R++R + I KP  GCQG+GIF+T   +       +  + Q Y++ P LIDGFKFD+RIYVLV SCDPL + ++  GL R  T +Y  PR +NL +I MHLTNYAINKRS
Sbjct:    7 LTSCKYESVRRAAQCC-------GLKEVGENE-----EWTVYWTDYAVSLERVMEMKRFQKINHFPGMIEICRKDLLARNLNRML-----RLFPEEYNIFPRTWCLPADYGDFQAY-------------------------------------RRRRKNRTF-ICKPDSGCQGRGIFITRNPEEIKHG--EHMICQQYISKPFLIDGFKFDMRIYVLVTSCDPLRIFVYEEGLARFATMRYIDPRRRNLGDICMHLTNYAINKRS 214          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A7S0WM39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WM39_9CHLO)

HSP 1 Score: 188 bits (478), Expect = 1.290e-52
Identity = 107/270 (39.63%), Postives = 148/270 (54.81%), Query Frame = 1
Query:    1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRA--ARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            L  CKY VV+   + +GW          G+       +W ++WTDTSVS++R+M ++  QKINHF GM  I RK  LAR + +M      + FP+DY F P++++LP++L DF                                      L + + + +  YI+KP  GCQGKGI L    + A  A    ++ VAQ Y+A P LIDG KFD+RIYVLVVSCDPL + I+  GL R CT  Y AP E+NL+ + MHLTNYA+NK ++K+
Sbjct:   51 LSNCKYEVVRLVQKKLGWKEV-------GDDD-----DWQVYWTDTSVSIERIMRLKKTQKINHFTGMLEICRKKSLARNISKMA-----KLFPDDYKFVPKSFVLPAELNDF--------------------------------------LSEFKSKKKKTYILKPDSGCQGKGIVLAQDAETAMGALEGTENVVAQRYLAKPYLIDGKKFDMRIYVLVVSCDPLRIFIYEEGLARFCTEPYTAPSEENLQEVCMHLTNYAVNKHNDKF 265          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A0L0HGX8_SPIPD (Uncharacterized protein n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HGX8_SPIPD)

HSP 1 Score: 198 bits (503), Expect = 2.780e-52
Identity = 114/271 (42.07%), Postives = 144/271 (53.14%), Query Frame = 1
Query:   10 CKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLE-WDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTS-----TWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            CKY VV++C + +G+ V                LE W +FW DT VS++RV+GM+ +QKINHFPGMH I RK  LAR LGR+      R FP+D +FFP+TWILPS+ ADF++                                       +  + R  YI KP  GCQGKGIFL       T            + Q Y+  P LIDG+KFDLR+YVLV S DPL V ++R GL R  T  YR P++ NL N+ MHLTNYAINK S  +
Sbjct:   57 CKYDVVRDCCQRLGYRVVDD-------------LEPWMLFWIDTGVSVERVLGMKPYQKINHFPGMHEICRKDRLARNLGRLS-----RLFPKDANFFPKTWILPSEWADFQIAH-------------------------------------RSSRRRQCYIGKPDHGCQGKGIFLFKSPDDVTPILKTLKGTTSLIVQTYLNRPFLIDGYKFDLRVYVLVASADPLRVFMYRDGLARFATEPYREPKDGNLDNVCMHLTNYAINKHSENF 272          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: UPI001FF027D3 (tubulin polyglutamylase ttll6 isoform X1 n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FF027D3)

HSP 1 Score: 196 bits (499), Expect = 5.840e-52
Identity = 111/268 (41.42%), Postives = 143/268 (53.36%), Query Frame = 1
Query:    1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            L  CKY  V+  A        ++G+   GEG+     +W +FWTD SVSL RVM M+ +QKINHFPGM+ I RK  LAR L RM      + FP+DYS FPRTW LP+D +DF                                      L   + +    YI KP  GCQG+GIFLT + K       +  + Q+Y++ P LIDGFKFDLRIYVLV SCDP  + ++  GL R CT++Y  P    + ++ MHLTNYAINK S  +
Sbjct:   36 LTNCKYESVRRAAR-------RYGLREVGEGE-----DWSLFWTDLSVSLDRVMEMKRYQKINHFPGMNEICRKDLLARNLNRML-----KLFPKDYSIFPRTWCLPADYSDF--------------------------------------LAYARAKKHKTYICKPESGCQGRGIFLTKSNKDIRPG--EHMICQVYISKPFLIDGFKFDLRIYVLVTSCDPFRIFVYNEGLARFCTNQYSEPTHNTMDDVCMHLTNYAINKHSENF 246          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A851D6Z8_TODME (TTL13 polyglutamylase (Fragment) n=12 Tax=Neognathae TaxID=8825 RepID=A0A851D6Z8_TODME)

HSP 1 Score: 188 bits (477), Expect = 9.820e-52
Identity = 112/268 (41.79%), Postives = 141/268 (52.61%), Query Frame = 1
Query:    1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            L  CKY  V+  A          G+   GE +     EW ++WTD SVSL+RVM M+ FQKINHFPGM  I RK  LAR L RM      R FP++Y+ FPRTW LP+D  DF+                                       KK R     +I KP  GCQG+GIF+T   +       +  + Q Y+A P LIDGFKFD+RIYVLV SCDPL + +++ GL R  T +Y  P  +NL +I MHLTNYAINKR+  +
Sbjct:   11 LTSCKYESVRRAARCC-------GLKEAGENE-----EWTVYWTDYSVSLERVMEMKRFQKINHFPGMIEICRKDLLARNLNRML-----RLFPKEYNIFPRTWCLPADYGDFQA----------------------------------YRRSKKNR----IFICKPESGCQGRGIFITHNPEEIKHG--EHMICQQYIAKPFLIDGFKFDMRIYVLVTSCDPLRIFVYKEGLARFATMRYIDPSSRNLDDICMHLTNYAINKRNENF 221          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: W5KNQ0_ASTMX (Tubulin tyrosine ligase like 6 n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=W5KNQ0_ASTMX)

HSP 1 Score: 196 bits (498), Expect = 1.030e-51
Identity = 112/268 (41.79%), Postives = 146/268 (54.48%), Query Frame = 1
Query:    1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            L  CKY  V+  A        K+G+   GEG+     +W +FWTD SVSL RVM M+ +QKINHFPGM  I RK  LAR + RM      + FP+DY+ FPRTW LP+D +DF+                                +T+    KK +     YI KP  GCQG+GIFLT + K       +  + Q+YV+ P +IDGFKFDLR+YVLV SCDP  + ++  GL R CT+ Y  P   N+ ++ MHLTNYAINK S  +
Sbjct:   59 LTNCKYESVRRAAR-------KYGLREAGEGE-----DWTLFWTDCSVSLDRVMDMKRYQKINHFPGMSEICRKDLLARNMNRML-----KLFPKDYNIFPRTWCLPADYSDFQA-------------------------------YTR---AKKHKM----YICKPDSGCQGRGIFLTKSNKDIRPG--EHMICQVYVSRPFIIDGFKFDLRVYVLVTSCDPFRIFVYNEGLARFCTNLYNEPTSSNMGDVCMHLTNYAINKHSENF 269          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: H3CXK3_TETNG (Tubulin tyrosine ligase-like family, member 6 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CXK3_TETNG)

HSP 1 Score: 189 bits (479), Expect = 1.210e-51
Identity = 100/233 (42.92%), Postives = 133/233 (57.08%), Query Frame = 1
Query:  106 GLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            G +W +FWTD SVSL RV  M+ +QKINHFPGM+ I RK  LAR + RM      + FP+DY+ FPRTW LP+D +DF                                   Q  +  K+ +    YI KP  GCQGKGIF+T ++K   +   +  + Q+Y++ P ++DG+KFDLRIYVLV SCDPL + +   GLVR CT KY  P   N+ ++ MHLTNY+INK S  +
Sbjct:    7 GEDWTLFWTDCSVSLDRVRDMKRYQKINHFPGMNEICRKDSLARNMNRML-----KLFPKDYNIFPRTWCLPADHSDF-----------------------------------QAYIRTKKNKS---YICKPDTGCQGKGIFITKSYKDIPQE--EHMICQVYISRPFIVDGYKFDLRIYVLVTSCDPLRIFMFEEGLVRFCTTKYNEPAHSNVDDVCMHLTNYSINKNSENF 194          
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A7K4Y8X1_BUCAB (TTL13 polyglutamylase (Fragment) n=1 Tax=Bucorvus abyssinicus TaxID=153643 RepID=A0A7K4Y8X1_BUCAB)

HSP 1 Score: 187 bits (475), Expect = 1.220e-51
Identity = 105/231 (45.45%), Postives = 131/231 (56.71%), Query Frame = 1
Query:  112 EWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
            EW + WTD SVSL+R+M M+ FQKINHFPGM  I RK  LAR LGRM      R FP++YS FPRTW LP+D  DF+                              +R T+ N           +I KP  GCQG+GIFLT + +       +  + Q Y++ P LIDGFKFD+RIYVLV SCDPL + ++  GL R  T +Y  P  KNL N+ MHLTNYAINKR+  +
Sbjct:   19 EWTVCWTDCSVSLERLMEMKRFQKINHFPGMIEICRKDLLARNLGRML-----RLFPKEYSIFPRTWCLPADYGDFQA-----------------------------YRRTRKNR---------IFICKPESGCQGRGIFLTHSSEEIRHG--EHMICQQYISKPFLIDGFKFDMRIYVLVTSCDPLRIFVYNEGLARFATMRYIDPSSKNLDNLCMHLTNYAINKRNENF 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1W9_ECTSI6.030e-10046.30Ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A0L0DV92_THETB1.080e-5343.61Tubulin polyglutamylase TTLL13 n=1 Tax=Thecamonas ... [more]
A0A7K9VKX0_ANSSE9.330e-5342.26TTL13 polyglutamylase (Fragment) n=7 Tax=Neognatha... [more]
A0A7S0WM39_9CHLO1.290e-5239.63Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A0L0HGX8_SPIPD2.780e-5242.07Uncharacterized protein n=3 Tax=Spizellomyces TaxI... [more]
UPI001FF027D35.840e-5241.42tubulin polyglutamylase ttll6 isoform X1 n=2 Tax=T... [more]
A0A851D6Z8_TODME9.820e-5241.79TTL13 polyglutamylase (Fragment) n=12 Tax=Neognath... [more]
W5KNQ0_ASTMX1.030e-5141.79Tubulin tyrosine ligase like 6 n=3 Tax=Astyanax me... [more]
H3CXK3_TETNG1.210e-5142.92Tubulin tyrosine ligase-like family, member 6 n=1 ... [more]
A0A7K4Y8X1_BUCAB1.220e-5145.45TTL13 polyglutamylase (Fragment) n=1 Tax=Bucorvus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig785contigH-paniculata_contig785:17022..21106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.0
Seed ortholog evalue1.4e-83
Seed eggNOG ortholog2880.D7G1W9
KEGG koko:K16582
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of cilium movement
EggNOG OGsKOG2158@1,KOG2158@2759
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-07_003840.1
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04812
Exons6
Model size1359
Cds size1359
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig785.15874.1prot_H-paniculata_contig785.15874.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig785 17022..21106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.6275678-CDS-H-paniculata_contig785:17021..176331622930976.6275678-CDS-H-paniculata_contig785:17021..17633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 17022..17633 -
1691481535.146162-CDS-H-paniculata_contig785:17021..176331691481535.146162-CDS-H-paniculata_contig785:17021..17633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 17022..17633 -
1622930976.6456215-CDS-H-paniculata_contig785:18452..186291622930976.6456215-CDS-H-paniculata_contig785:18452..18629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 18453..18629 -
1691481535.1585064-CDS-H-paniculata_contig785:18452..186291691481535.1585064-CDS-H-paniculata_contig785:18452..18629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 18453..18629 -
1622930976.664311-CDS-H-paniculata_contig785:19138..192541622930976.664311-CDS-H-paniculata_contig785:19138..19254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 19139..19254 -
1691481535.170268-CDS-H-paniculata_contig785:19138..192541691481535.170268-CDS-H-paniculata_contig785:19138..19254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 19139..19254 -
1622930976.6780856-CDS-H-paniculata_contig785:19798..199821622930976.6780856-CDS-H-paniculata_contig785:19798..19982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 19799..19982 -
1691481535.179779-CDS-H-paniculata_contig785:19798..199821691481535.179779-CDS-H-paniculata_contig785:19798..19982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 19799..19982 -
1622930976.6987264-CDS-H-paniculata_contig785:20433..205501622930976.6987264-CDS-H-paniculata_contig785:20433..20550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 20434..20550 -
1691481535.1885295-CDS-H-paniculata_contig785:20433..205501691481535.1885295-CDS-H-paniculata_contig785:20433..20550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 20434..20550 -
1622930976.7156162-CDS-H-paniculata_contig785:20953..211061622930976.7156162-CDS-H-paniculata_contig785:20953..21106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 20954..21106 -
1691481535.1967468-CDS-H-paniculata_contig785:20953..211061691481535.1967468-CDS-H-paniculata_contig785:20953..21106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig785 20954..21106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig785.15874.1

>prot_H-paniculata_contig785.15874.1 ID=prot_H-paniculata_contig785.15874.1|Name=mRNA_H-paniculata_contig785.15874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=453bp
LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSL
QRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFF
PRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQL
NLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVA
NPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLR
NIRMHLTNYAINKRSNKYTSPGKSEQISSEAETRSTTAQENHHTSLTANN
ERVAGSVQVEQNFSTTSWPNTKDRATTEDRTASTKEDHKDGMREKGLERE
KRDDTATAAAAAENDGGESVIQGQDAPVEVESGQGYGGGSEGDGRDERGS
KRSLEWFFRWLEEGGRDAGALWREVENLVVKTLASAQPSLAQAYRSCFCG
ETR
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mRNA from alignment at H-paniculata_contig785:17022..21106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig785.15874.1 ID=mRNA_H-paniculata_contig785.15874.1|Name=mRNA_H-paniculata_contig785.15874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4085bp|location=Sequence derived from alignment at H-paniculata_contig785:17022..21106- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGGCAGTGCAAATATAGTGTAGTACAAGAATGTGCAGAGGACATGGG ATGGTCCGTGACAAAGCATGGTGTTAATGCCAACGGCGAGGGAAAGAGGG CGATAGGGCTGGAGTGGGATATTTTTTGGACAGATACCTCGGTTTCGCTC CAGGTGATCAACACTCTTGAGTATTACTATTAAGACATCGGGATGTAGCT CTCATGCGATCCAATTTTATACAACCTGCTTCCCCCACGGTGGGGTGGTT TTGAATAGTTGGTTTGGCGATGCGCTCGCAACGTGCGACTTCCCACCTTT TAGCCTTTTTTTGTGTGGGTTGATGACGACAGGGATAAGATTGCCGCTAT CAGATCTGATCTGGCACCAGCTCCTTCTCCTTTGGTGTGTACCCTTTGAA CACGCGTAAATATTACCCGACATAAAAATGAGCCCCATGACCGTGGTAAC GTCCCTTACCAACTTTGGTTTTGCGCCAGCCAGATTTTTCCTTCAAAGAT AAATAGAGCAGTAGGAAGGCTAAGGGCACTCTTTTCTCTCTCACGTGCGC ATACAGAGGGTCATGGGGATGCGAGGATTTCAAAAGATCAACCATTTTCC GGGCATGCATCTCATTTACCGAAAGGGGGAATTGGCCCGGATTCTCGGCA GAATGCAGGCGAGAAGGAGGCCTGTTCCTGTGTCACATCCTATCTATGAT AGTGGGACCTTGTAGTTTATTGTAGTGCTTGGAGTTTGGAGTTGGAGCCA AGAGTCCTTCCACCCCCTTGAGATATCGCTGGCCCTTTGATGGACGGCAT CGATGGCTCTGTGACGGACTGCCAGAGATCAATCATGCAAAGCAAAGAGT AGTCATCGGCATTTTTTAGAGTGCCCAGCGAAATCTTCTTGAAACGCCCC CAACACCCCCTGCTTGTTGTTGAGGAATCAGTTCATCTCTTTGGGTTGGT GGTGGAAATAACTATATTAGTTCGATCGTGTCCGCTTCCGCTATGCAGTA CGAGGTACATTATCGGCAGTACACTCAGCGCGTTGTTTGTTGGCTTTTGT GGGGGCATCGTACGCTCTCCCCTTCAATGTATATGTTTGATTGTTACTGT GTCAATACGTATTACCATGTTCAGCGGGAGTTTCCGGAAGACTACAGCTT TTTCCCCAGGACATGGATTCTTCCCTCTGACCTAGCGGATTTTAAGGTGG GCAGCGGAATAGATGCAGAGTGTATATCGATATCGAGCCGGATAGCGGGA AAAAAAATCAGTTGCAGCATTTGTGATGTTGATGTGTTTCGTTGGACACA ACTAAATCGTGATCGCTGAATTGTTCTGCAATTCTCTGTGCATCGAATGT GTTTGTCGGTTTTTCAGTGCAGCCCTCGCCGATGACATTAGGGTATCGCC GGAACAACCGAAACATCTTCACGTTAGTTATGATGGGGTGGTGGTGCAAA ACCCGGCGGGCGTCAGACATGCTTGCCGATCTTTCTGGCATGTGGGAACG AAGATATAGAGGCGTGACCGGCTATCGCAGTCCCCTAGATCCTCTCCTCT GTTCCATGGTATCCGAGTTGATCTCTAGACGTTTTTTCGTCACTCGGAAC ATTGCACTGTACCCACATTGATTAATACCGCGAGAACCAGTTGATGAAAA GGCACTTTATTAGAGCAGGAACGCTGTCCACACTTTTGCTTGTATCTGTC AAGCACTACTTGCGGTAGAGGACAACTACACCGCATTGACGCTAGCGTGA ATCAAGATCAAGCACGTATTTCAAAGGTCGACAAATTCCCCCGCTGATCG TAAACCCAGGCCGAGACTACCGCCACCGCAAGTCTTTGTTCAAACACCGG AGTCGGCAAGAAACAAAGGCAGGACCGACCATACTATATTGTCAAGCCCG TGAGAGGCTGCCAAGGCAAAGGGATCTTTCTTACTAGCACCTGGAAAAGG GCAGCCCGATCAAGTAGGGTGGGTGTTGGGTCGGACAAAGGAAGGGTGCG TGCGGGGAAGTGATAACGTGCGTTGTTAGCGAGGTCTCGCGTAATATGTA CCATTCGACGTACGTGTGTTTTTTTCGGGTTGAGAAGGAAGTGGATTTTG CGTTTACTATCAGGTAATAGCCTTCTCAAATTCTCAGCCTGGTGGAGAAA TATCGCGCCCACGATTCCACCAACCGAAGTGTTTTCTCGCGACAGAAACG GTAAAAATTACACACTGCGCCATCATCAGCCATCACACATGCATACGGAG GCGAACTTAAAGAAGGAACACGAAAACGTTCTCAAAGAGCTCGGATTCGG CGGATAGTCCATCGCCGACTGTTGTTAGTGCCGTGATATTTCAGTGTTTG CCTAAAAAAAGTGTGACTATTGTACTTAGGGCGGCGCTACACCCAACCGT AACCACACTACTCGACGGTTCAAGTTATATCCCCCCCCCCCGCGCTCCCC CGGAATAATCGCTACTGCGTGTCTCAGGACGATACCGTCGCCCAAATCTA CGTGGCTAATCCGTTGCTAATAGACGGGTTCAAGTTCGACCTTCGCATCT ACGTCCTCGTTGTGTCGTGTGATCCGCTAACGGTCATGATACATCGAGGG GGGCTCGTTCGCCTGTGTACACACAAGTACCGGGCGCCGCGAGAGAAGAA CCTGGTGCGAAGGTCGTCCTTGAGGCTGTCTTTACGGGCGGGTTCATCAT CATAACGCGTTCATCTTGACGATCGAAGCGTGGTACTTCACCTGCAGTGT GTAAACTAGTAGTCTATTGAGATTTTAGTAGCCTCTACTTCACATGTTTT ACGACAAAATCAGTTCGAGAGAAACAAAACGACACGCAACTTCCAAAAAC ACCCTGACCCTATATTCTTGCTCCGATGGACTTGACGAGGTAAATTAAGC AATTTACTGCTGTGGTGTAGTTTCAATAGAGGAACACAAAAATTCGGCTC GCTGAGAACCGGAACGGATCAGCAACGAAGACCGTGTGAATTTGATCATT GCATCAGCAACGGTCTAACTTTGTAGTGACGACCAGAGTGACAGGAAGTT TGGGGGAACGTCAACATCAATGAAAATCACTACATATATACACACTTGAA GTATACATATAATGCCGATGGTAAGGCAGGGCCTAGAGGATGGCAACCCT TCACTCTCAATAATCTCGGCGTGGATTGGTCGGATTCACATAGTGCTGGC AATCTTTGGGGTTACGATGTGACAACACTACGGCCATAGCTGTGGTTATC GTCCCCGGTACTGCTGTTGTGGCCCGGGCATACTCCCGCCCTTCTAGTTG AATCGAGTGTAGGCTTCACAAACTAAACGTTGTGGCAGTCAACTTAGTCG GTACCAGGATGAACCAAAAAATACACTGTGTATATAGTTCCACGCAAAAA TGCTCAGTCCAATCGTCCCGTTCTCCCTCGCCGCTCTCATTGCCTAGTCT TCTCCCAATCCGTCATAACACAGCGCAACATCCGGATGCATCTGACCAAC TACGCGATCAATAAACGCAGCAACAAATACACGTCCCCGGGAAAATCCGA GCAAATCTCGTCCGAGGCGGAAACTAGAAGCACCACCGCCCAGGAAAACC ACCATACTTCGTTGACAGCTAACAACGAACGCGTCGCGGGGTCTGTTCAA GTGGAACAGAATTTTTCCACAACAAGTTGGCCGAACACTAAAGACCGCGC GACAACCGAGGATCGTACAGCTAGCACGAAGGAAGATCACAAAGACGGAA TGCGTGAGAAGGGACTTGAACGGGAAAAGAGGGATGACACCGCCACCGCG GCCGCCGCCGCTGAAAACGACGGTGGGGAGTCGGTGATACAAGGGCAGGA TGCACCAGTAGAAGTAGAATCGGGACAAGGATATGGAGGGGGTTCAGAGG GTGACGGGAGAGATGAACGGGGAAGCAAACGCAGCCTGGAGTGGTTTTTT AGATGGCTCGAGGAAGGGGGAAGGGATGCGGGGGCCCTGTGGCGTGAGGT GGAAAATCTTGTTGTCAAGACGTTGGCTTCTGCACAGCCTTCGCTGGCTC AAGCGTACAGATCATGCTTTTGTGGCGAGACGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig785:17022..21106-

>mRNA_H-paniculata_contig785.15874.1 ID=mRNA_H-paniculata_contig785.15874.1|Name=mRNA_H-paniculata_contig785.15874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at H-paniculata_contig785:17022..21106- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGGCAGTGCAAATATAGTGTAGTACAAGAATGTGCAGAGGACATGGG
ATGGTCCGTGACAAAGCATGGTGTTAATGCCAACGGCGAGGGAAAGAGGG
CGATAGGGCTGGAGTGGGATATTTTTTGGACAGATACCTCGGTTTCGCTC
CAGCTCGGGCAGTGCAAATATAGTGTAGTACAAGAATGTGCAGAGGACAT
GGGATGGTCCGTGACAAAGCATGGTGTTAATGCCAACGGCGAGGGAAAGA
GGGCGATAGGGCTGGAGTGGGATATTTTTTGGACAGATACCTCGGTTTCG
CTCCAGAGGGTCATGGGGATGCGAGGATTTCAAAAGATCAACCATTTTCC
GGGCATGCATCTCATTTACCGAAAGGGGGAATTGGCCCGGATTCTCGGCA
GAATGCAGGCGAGAAGGAGGCCTAGGGTCATGGGGATGCGAGGATTTCAA
AAGATCAACCATTTTCCGGGCATGCATCTCATTTACCGAAAGGGGGAATT
GGCCCGGATTCTCGGCAGAATGCAGGCGAGAAGGAGGCCTCGGGAGTTTC
CGGAAGACTACAGCTTTTTCCCCAGGACATGGATTCTTCCCTCTGACCTA
GCGGATTTTAAGGTGGGCAGCGGAATAGATGCAGAGTGTATATCGATATC
GAGCCGGATAGCGGGAAAAAAAATCAGTTGCAGCATTTGTGATGTTGATG
TGTTTCGTTGGACACAACTAAATCCGGGAGTTTCCGGAAGACTACAGCTT
TTTCCCCAGGACATGGATTCTTCCCTCTGACCTAGCGGATTTTAAGGTGG
GCAGCGGAATAGATGCAGAGTGTATATCGATATCGAGCCGGATAGCGGGA
AAAAAAATCAGTTGCAGCATTTGTGATGTTGATGTGTTTCGTTGGACACA
ACTAAATCTCGGCAAGAAACAAAGGCAGGACCGACCATACTATATTGTCA
AGCCCGTGAGAGGCTGCCAAGGCAAAGGGATCTTTCTTACTAGCACCTGG
AAAAGGGCAGCCCGATCAAGTAGGTCGGCAAGAAACAAAGGCAGGACCGA
CCATACTATATTGTCAAGCCCGTGAGAGGCTGCCAAGGCAAAGGGATCTT
TCTTACTAGCACCTGGAAAAGGGCAGCCCGATCAAGTAGGGACGATACCG
TCGCCCAAATCTACGTGGCTAATCCGTTGCTAATAGACGGGTTCAAGTTC
GACCTTCGCATCTACGTCCTCGTTGTGTCGTGTGATCCGCTAACGGTCAT
GATACATCGAGGGGGGCTCGTTCGCCTGTGTACACACAAGTACCGGGCGC
CGCGAGAGAAGAACCTGGACGATACCGTCGCCCAAATCTACGTGGCTAAT
CCGTTGCTAATAGACGGGTTCAAGTTCGACCTTCGCATCTACGTCCTCGT
TGTGTCGTGTGATCCGCTAACGGTCATGATACATCGAGGGGGGCTCGTTC
GCCTGTGTACACACAAGTACCGGGCGCCGCGAGAGAAGAACCTGCGCAAC
ATCCGGATGCATCTGACCAACTACGCGATCAATAAACGCAGCAACAAATA
CACGTCCCCGGGAAAATCCGAGCAAATCTCGTCCGAGGCGGAAACTAGAA
GCACCACCGCCCAGGAAAACCACCATACTTCGTTGACAGCTAACAACGAA
CGCGTCGCGGGGTCTGTTCAAGTGGAACAGAATTTTTCCACAACAAGTTG
GCCGAACACTAAAGACCGCGCGACAACCGAGGATCGTACAGCTAGCACGA
AGGAAGATCACAAAGACGGAATGCGTGAGAAGGGACTTGAACGGGAAAAG
AGGGATGACACCGCCACCGCGGCCGCCGCCGCTGAAAACGACGGTGGGGA
GTCGGTGATACAAGGGCAGGATGCACCAGTAGAAGTAGAATCGGGACAAG
GATATGGAGGGGGTTCAGAGGGTGACGGGAGAGATGAACGGGGAAGCAAA
CGCAGCCTGGAGTGGTTTTTTAGATGGCTCGAGGAAGGGGGAAGGGATGC
GGGGGCCCTGTGGCGTGAGGTGGAAAATCTTGTTGTCAAGACGTTGGCTT
CTGCACAGCCTTCGCTGGCTCAAGCGTACAGATCATGCTTTTGTGGCGAG
ACGAGACGCAACATCCGGATGCATCTGACCAACTACGCGATCAATAAACG
CAGCAACAAATACACGTCCCCGGGAAAATCCGAGCAAATCTCGTCCGAGG
CGGAAACTAGAAGCACCACCGCCCAGGAAAACCACCATACTTCGTTGACA
GCTAACAACGAACGCGTCGCGGGGTCTGTTCAAGTGGAACAGAATTTTTC
CACAACAAGTTGGCCGAACACTAAAGACCGCGCGACAACCGAGGATCGTA
CAGCTAGCACGAAGGAAGATCACAAAGACGGAATGCGTGAGAAGGGACTT
GAACGGGAAAAGAGGGATGACACCGCCACCGCGGCCGCCGCCGCTGAAAA
CGACGGTGGGGAGTCGGTGATACAAGGGCAGGATGCACCAGTAGAAGTAG
AATCGGGACAAGGATATGGAGGGGGTTCAGAGGGTGACGGGAGAGATGAA
CGGGGAAGCAAACGCAGCCTGGAGTGGTTTTTTAGATGGCTCGAGGAAGG
GGGAAGGGATGCGGGGGCCCTGTGGCGTGAGGTGGAAAATCTTGTTGTCA
AGACGTTGGCTTCTGCACAGCCTTCGCTGGCTCAAGCGTACAGATCATGC
TTTTGTGGCGAGACGAGA
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