mRNA_H-paniculata_contig785.15874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: D7G1W9_ECTSI (Ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W9_ECTSI) HSP 1 Score: 319 bits (818), Expect = 6.030e-100 Identity = 213/460 (46.30%), Postives = 258/460 (56.09%), Query Frame = 1
Query: 46 MGWSVTKHGVNANGEGKR-AIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSR---IAGKKISCSICDV----DVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKYTSPGKSEQISSEAETRSTTAQENHHTSLTANNERVAGSVQVEQNFSTTSWPNTKDRATTEDRTASTKEDHKDG-MREKGLEREKRDDTATAAAAAENDGGESVIQGQDAPVEVESGQGYGGGSEGDGRD------------ERG-SKRSLEWFFRWLEEGGRDAGALWREVENLVVKTLASAQPSLAQAYRSCFCGETR 1359
MGWS+++ + EG A G WD++WTDTSVSLQRVM MRG QKINHFPGM I RKG+LAR L RMQ REFPE+Y+F PRTW+LP+DLADFK E +++++R GKK +V D +N K R R YYIVKP+ GCQGK IFLTS WKR + ++++ VAQ YV+NPLLIDG+K DLR+YVLV S PL VM+H+ GLVRLCT YR PR NLRN RMHLTNYAINK S + P + A T T ED E H + K LE +D + A ++GG S + + G G+ G DG D +RG SKRSLEWFF WLEEGGRD+ ALWREV +LVVKTL +AQPSL +AY +CFCGE R
Sbjct: 1 MGWSISEGNKGRSEEGGSVAGGGRWDVYWTDTSVSLQRVMRMRGLQKINHFPGMCAICRKGDLARSLSRMQ-----REFPEEYAFSPRTWVLPADLADFK------EEILTVNARGIKKKGKKPRTRKNNVKGDDDNDGDDDVNSRKNGRAKRGYYIVKPIGGCQGKDIFLTSGWKRVSTANQEPAVAQRYVSNPLLIDGYKCDLRVYVLVTSVCPLRVMLHKRGLVRLCTSTYRPPRNGNLRNTRMHLTNYAINKGSENFVPP-------------TGAAGPLPRTETTXXXXXXXXXXXXXXXXXXXXXXXCAQAVAEED------EIHVHHVLMSKTLEN--KDVPSLRGHNARSNGGSS------SDATPDGGYGWTKGCTSDGDDGIPRGGDRKEEGKRGASKRSLEWFFGWLEEGGRDSAALWREVADLVVKTLITAQPSLERAYCACFCGEVR 422
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A0L0DV92_THETB (Tubulin polyglutamylase TTLL13 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DV92_THETB) HSP 1 Score: 203 bits (516), Expect = 1.080e-53 Identity = 116/266 (43.61%), Postives = 147/266 (55.26%), Query Frame = 1
Query: 7 QCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
QCKY VV+ C ++GW V + EWD++W D++ LQ + M+ FQ+INHFPGMH I RK LAR L RMQ R+FP+ ++FFP+TWILP+D DFK FR +R +P I KP QGKGIFLT T + D VAQ+YV NPLLIDG+KFDLRIYVLV S DPL + I+ GLVRLCT KY P K+L + HLTNY++NK++ +
Sbjct: 175 QCKYEVVRACVAELGWHVQESNA----------AREWDVYWIDSTAPLQILSTMKPFQRINHFPGMHEICRKDSLARNLTRMQ-----RKFPDAFTFFPKTWILPADYGDFKAH----------------------------FR---------KRSAKPL-ICKPENSAQGKGIFLTHTGDEIG--AFDHYVAQVYVNNPLLIDGYKFDLRIYVLVTSADPLRIFIYDDGLVRLCTEKYSQPTSKSLGSAFQHLTNYSVNKKNTNF 385
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A7K9VKX0_ANSSE (TTL13 polyglutamylase (Fragment) n=7 Tax=Neognathae TaxID=8825 RepID=A0A7K9VKX0_ANSSE) HSP 1 Score: 190 bits (483), Expect = 9.330e-53 Identity = 112/265 (42.26%), Postives = 145/265 (54.72%), Query Frame = 1
Query: 1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRS 795
L CKY V+ A+ G+ GE + EW ++WTD +VSL+RVM M+ FQKINHFPGM I RK LAR L RM R FPE+Y+ FPRTW LP+D DF+ +++R++R + I KP GCQG+GIF+T + + + Q Y++ P LIDGFKFD+RIYVLV SCDPL + ++ GL R T +Y PR +NL +I MHLTNYAINKRS
Sbjct: 7 LTSCKYESVRRAAQCC-------GLKEVGENE-----EWTVYWTDYAVSLERVMEMKRFQKINHFPGMIEICRKDLLARNLNRML-----RLFPEEYNIFPRTWCLPADYGDFQAY-------------------------------------RRRRKNRTF-ICKPDSGCQGRGIFITRNPEEIKHG--EHMICQQYISKPFLIDGFKFDMRIYVLVTSCDPLRIFVYEEGLARFATMRYIDPRRRNLGDICMHLTNYAINKRS 214
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A7S0WM39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WM39_9CHLO) HSP 1 Score: 188 bits (478), Expect = 1.290e-52 Identity = 107/270 (39.63%), Postives = 148/270 (54.81%), Query Frame = 1
Query: 1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRA--ARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
L CKY VV+ + +GW G+ +W ++WTDTSVS++R+M ++ QKINHF GM I RK LAR + +M + FP+DY F P++++LP++L DF L + + + + YI+KP GCQGKGI L + A A ++ VAQ Y+A P LIDG KFD+RIYVLVVSCDPL + I+ GL R CT Y AP E+NL+ + MHLTNYA+NK ++K+
Sbjct: 51 LSNCKYEVVRLVQKKLGWKEV-------GDDD-----DWQVYWTDTSVSIERIMRLKKTQKINHFTGMLEICRKKSLARNISKMA-----KLFPDDYKFVPKSFVLPAELNDF--------------------------------------LSEFKSKKKKTYILKPDSGCQGKGIVLAQDAETAMGALEGTENVVAQRYLAKPYLIDGKKFDMRIYVLVVSCDPLRIFIYEEGLARFCTEPYTAPSEENLQEVCMHLTNYAVNKHNDKF 265
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A0L0HGX8_SPIPD (Uncharacterized protein n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HGX8_SPIPD) HSP 1 Score: 198 bits (503), Expect = 2.780e-52 Identity = 114/271 (42.07%), Postives = 144/271 (53.14%), Query Frame = 1
Query: 10 CKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLE-WDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTS-----TWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
CKY VV++C + +G+ V LE W +FW DT VS++RV+GM+ +QKINHFPGMH I RK LAR LGR+ R FP+D +FFP+TWILPS+ ADF++ + + R YI KP GCQGKGIFL T + Q Y+ P LIDG+KFDLR+YVLV S DPL V ++R GL R T YR P++ NL N+ MHLTNYAINK S +
Sbjct: 57 CKYDVVRDCCQRLGYRVVDD-------------LEPWMLFWIDTGVSVERVLGMKPYQKINHFPGMHEICRKDRLARNLGRLS-----RLFPKDANFFPKTWILPSEWADFQIAH-------------------------------------RSSRRRQCYIGKPDHGCQGKGIFLFKSPDDVTPILKTLKGTTSLIVQTYLNRPFLIDGYKFDLRVYVLVASADPLRVFMYRDGLARFATEPYREPKDGNLDNVCMHLTNYAINKHSENF 272
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: UPI001FF027D3 (tubulin polyglutamylase ttll6 isoform X1 n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FF027D3) HSP 1 Score: 196 bits (499), Expect = 5.840e-52 Identity = 111/268 (41.42%), Postives = 143/268 (53.36%), Query Frame = 1
Query: 1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
L CKY V+ A ++G+ GEG+ +W +FWTD SVSL RVM M+ +QKINHFPGM+ I RK LAR L RM + FP+DYS FPRTW LP+D +DF L + + YI KP GCQG+GIFLT + K + + Q+Y++ P LIDGFKFDLRIYVLV SCDP + ++ GL R CT++Y P + ++ MHLTNYAINK S +
Sbjct: 36 LTNCKYESVRRAAR-------RYGLREVGEGE-----DWSLFWTDLSVSLDRVMEMKRYQKINHFPGMNEICRKDLLARNLNRML-----KLFPKDYSIFPRTWCLPADYSDF--------------------------------------LAYARAKKHKTYICKPESGCQGRGIFLTKSNKDIRPG--EHMICQVYISKPFLIDGFKFDLRIYVLVTSCDPFRIFVYNEGLARFCTNQYSEPTHNTMDDVCMHLTNYAINKHSENF 246
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A851D6Z8_TODME (TTL13 polyglutamylase (Fragment) n=12 Tax=Neognathae TaxID=8825 RepID=A0A851D6Z8_TODME) HSP 1 Score: 188 bits (477), Expect = 9.820e-52 Identity = 112/268 (41.79%), Postives = 141/268 (52.61%), Query Frame = 1
Query: 1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
L CKY V+ A G+ GE + EW ++WTD SVSL+RVM M+ FQKINHFPGM I RK LAR L RM R FP++Y+ FPRTW LP+D DF+ KK R +I KP GCQG+GIF+T + + + Q Y+A P LIDGFKFD+RIYVLV SCDPL + +++ GL R T +Y P +NL +I MHLTNYAINKR+ +
Sbjct: 11 LTSCKYESVRRAARCC-------GLKEAGENE-----EWTVYWTDYSVSLERVMEMKRFQKINHFPGMIEICRKDLLARNLNRML-----RLFPKEYNIFPRTWCLPADYGDFQA----------------------------------YRRSKKNR----IFICKPESGCQGRGIFITHNPEEIKHG--EHMICQQYIAKPFLIDGFKFDMRIYVLVTSCDPLRIFVYKEGLARFATMRYIDPSSRNLDDICMHLTNYAINKRNENF 221
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: W5KNQ0_ASTMX (Tubulin tyrosine ligase like 6 n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=W5KNQ0_ASTMX) HSP 1 Score: 196 bits (498), Expect = 1.030e-51 Identity = 112/268 (41.79%), Postives = 146/268 (54.48%), Query Frame = 1
Query: 1 LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
L CKY V+ A K+G+ GEG+ +W +FWTD SVSL RVM M+ +QKINHFPGM I RK LAR + RM + FP+DY+ FPRTW LP+D +DF+ +T+ KK + YI KP GCQG+GIFLT + K + + Q+YV+ P +IDGFKFDLR+YVLV SCDP + ++ GL R CT+ Y P N+ ++ MHLTNYAINK S +
Sbjct: 59 LTNCKYESVRRAAR-------KYGLREAGEGE-----DWTLFWTDCSVSLDRVMDMKRYQKINHFPGMSEICRKDLLARNMNRML-----KLFPKDYNIFPRTWCLPADYSDFQA-------------------------------YTR---AKKHKM----YICKPDSGCQGRGIFLTKSNKDIRPG--EHMICQVYVSRPFIIDGFKFDLRVYVLVTSCDPFRIFVYNEGLARFCTNLYNEPTSSNMGDVCMHLTNYAINKHSENF 269
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: H3CXK3_TETNG (Tubulin tyrosine ligase-like family, member 6 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CXK3_TETNG) HSP 1 Score: 189 bits (479), Expect = 1.210e-51 Identity = 100/233 (42.92%), Postives = 133/233 (57.08%), Query Frame = 1
Query: 106 GLEWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
G +W +FWTD SVSL RV M+ +QKINHFPGM+ I RK LAR + RM + FP+DY+ FPRTW LP+D +DF Q + K+ + YI KP GCQGKGIF+T ++K + + + Q+Y++ P ++DG+KFDLRIYVLV SCDPL + + GLVR CT KY P N+ ++ MHLTNY+INK S +
Sbjct: 7 GEDWTLFWTDCSVSLDRVRDMKRYQKINHFPGMNEICRKDSLARNMNRML-----KLFPKDYNIFPRTWCLPADHSDF-----------------------------------QAYIRTKKNKS---YICKPDTGCQGKGIFITKSYKDIPQE--EHMICQVYISRPFIVDGYKFDLRIYVLVTSCDPLRIFMFEEGLVRFCTTKYNEPAHSNVDDVCMHLTNYSINKNSENF 194
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Match: A0A7K4Y8X1_BUCAB (TTL13 polyglutamylase (Fragment) n=1 Tax=Bucorvus abyssinicus TaxID=153643 RepID=A0A7K4Y8X1_BUCAB) HSP 1 Score: 187 bits (475), Expect = 1.220e-51 Identity = 105/231 (45.45%), Postives = 131/231 (56.71%), Query Frame = 1
Query: 112 EWDIFWTDTSVSLQRVMGMRGFQKINHFPGMHLIYRKGELARILGRMQARRRPREFPEDYSFFPRTWILPSDLADFKVGSGIDAECISISSRIAGKKISCSICDVDVFRWTQLNLGKKQRQDRPYYIVKPVRGCQGKGIFLTSTWKRAARSSRDDTVAQIYVANPLLIDGFKFDLRIYVLVVSCDPLTVMIHRGGLVRLCTHKYRAPREKNLRNIRMHLTNYAINKRSNKY 804
EW + WTD SVSL+R+M M+ FQKINHFPGM I RK LAR LGRM R FP++YS FPRTW LP+D DF+ +R T+ N +I KP GCQG+GIFLT + + + + Q Y++ P LIDGFKFD+RIYVLV SCDPL + ++ GL R T +Y P KNL N+ MHLTNYAINKR+ +
Sbjct: 19 EWTVCWTDCSVSLERLMEMKRFQKINHFPGMIEICRKDLLARNLGRML-----RLFPKEYSIFPRTWCLPADYGDFQA-----------------------------YRRTRKNR---------IFICKPESGCQGRGIFLTHSSEEIRHG--EHMICQQYISKPFLIDGFKFDMRIYVLVTSCDPLRIFVYNEGLARFATMRYIDPSSKNLDNLCMHLTNYAINKRNENF 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig785.15874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig785.15874.1 >prot_H-paniculata_contig785.15874.1 ID=prot_H-paniculata_contig785.15874.1|Name=mRNA_H-paniculata_contig785.15874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=453bp LGQCKYSVVQECAEDMGWSVTKHGVNANGEGKRAIGLEWDIFWTDTSVSLback to top mRNA from alignment at H-paniculata_contig785:17022..21106- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig785.15874.1 ID=mRNA_H-paniculata_contig785.15874.1|Name=mRNA_H-paniculata_contig785.15874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4085bp|location=Sequence derived from alignment at H-paniculata_contig785:17022..21106- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig785:17022..21106- >mRNA_H-paniculata_contig785.15874.1 ID=mRNA_H-paniculata_contig785.15874.1|Name=mRNA_H-paniculata_contig785.15874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at H-paniculata_contig785:17022..21106- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |