mRNA_H-paniculata_contig7843.15869.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7843.15869.1
Unique NamemRNA_H-paniculata_contig7843.15869.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: D7FN75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN75_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.350e-39
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 VNDGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEMP 198
            +NDGHAF FDYMEPRAPK GDM  EGCER CGD+  K CGCTDLACTGPNPPGEQHNRRWAVYE+P
Sbjct:    1 MNDGHAFVFDYMEPRAPKGGDMKGEGCERTCGDLQTKACGCTDLACTGPNPPGEQHNRRWAVYELP 66
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A7S2XVF7_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.310e-24
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    7 DGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEMPV 201
            DGHAFAF Y++ R    G+M   GCERPC D+  K CGCTDLACTGP P GE+HNRRW VY +P 
Sbjct:  381 DGHAFAFSYLDHRGHPGGNMQLGGCERPCADLTTKACGCTDLACTGPTPAGEEHNRRWVVYRLPT 445
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: I2CR01_NANGC (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CR01_NANGC)

HSP 1 Score: 99.8 bits (247), Expect = 8.950e-23
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    7 DGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEM 195
            DGH + FD +  +   +GDMF EGCERPC D A+ VCGC D  CTGP PPGE+HNRRWAVYE+
Sbjct:  829 DGHGWIFDTLAHKGNPQGDMFGEGCERPCADEAKTVCGCMDDFCTGPPPPGEEHNRRWAVYEI 891
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A7S4D8W8_HETAK (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8W8_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 2.750e-21
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    4 NDGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEMPV 201
            +DGH FAF ++    P  GDM   GCERPC D   KVCGCTDLAC+GP  PG++HNRRW VY MP 
Sbjct:  848 DDGHGFAFSHLA--GPPGGDMQGGGCERPCPDDPAKVCGCTDLACSGPPAPGQEHNRRWVVYRMPT 911
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A4D9CP29_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CP29_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.260e-20
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   55 KGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEM 195
            KGD+F EGCERPC D A+ VCGC D  CTGP PPGE+HNRRWAVYE+
Sbjct:  103 KGDIFGEGCERPCADEAKTVCGCMDDFCTGPPPPGEEHNRRWAVYEI 149
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A7S3H9K2_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9K2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.610e-18
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    7 DGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEM 195
            DGHAFAF  ++     +G +   GCERPC D+  K CGCTD ACTGP   GE+HNRRWAVYE+
Sbjct:  812 DGHAFAFSKLDT---SRGQLQGGGCERPCADLDYKTCGCTDGACTGPIIKGEEHNRRWAVYEV 871
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A6U0UCW9_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UCW9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.610e-15
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 NDGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEMP 198
            +DGHAF F+ +    P  GD+   GCERPC D   KVCGCTD +C+   P  ++++RRWAVY+MP
Sbjct:  833 SDGHAFVFNKLTSSTPT-GDLKDGGCERPCLDEENKVCGCTDDSCSAEKPSHQENHRRWAVYKMP 896
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A835Z1M3_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.990e-14
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    7 DGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEM 195
            DGHAF FD +   A         GCER C D A   CGC D AC+ P P  E+HNRRWAVYE+
Sbjct:  836 DGHAFVFDAVTSEAAATA---GGGCERACADDAAAACGCMDAACSAPKPAAEEHNRRWAVYEV 895
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BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A485KAB8_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAB8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.790e-13
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    7 DGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEM 195
            DGH+F F+ +     K  D  ++ CERPC D   K CGC D ACT P   GE+HNRRW VYE+
Sbjct:  877 DGHSFVFNKLLKNKGKWTD--SKDCERPCLDDGSKACGCIDGACTEPKMDGEEHNRRWVVYEV 937
[Close]
BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Match: A0A397CUG6_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CUG6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.270e-12
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 DGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPNPPGEQHNRRWAVYEM 195
            DGH+F F+ ++     K     EGC RPC D   K CGC+D AC  P   GE+HNRRW VYE+
Sbjct:  871 DGHSFVFNKLKTGGKWKAGK--EGCARPCLDDGAKACGCSDDACLEPKMDGEEHNRRWVVYEV 931
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7843.15869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FN75_ECTSI1.350e-3983.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XVF7_9STRA2.310e-2463.08Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
I2CR01_NANGC8.950e-2363.49Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A7S4D8W8_HETAK2.750e-2160.61Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A4D9CP29_9STRA1.260e-2074.47Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A7S3H9K2_9STRA6.610e-1858.73Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A6U0UCW9_9STRA4.610e-1550.77Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A835Z1M3_9STRA2.990e-1452.38Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A485KAB8_9STRA6.790e-1350.79Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A397CUG6_9STRA1.270e-1249.21Dolichyl-diphosphooligosaccharide--protein glycotr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7843contigH-paniculata_contig7843:1578..2748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue6.4e-10
Seed eggNOG ortholog157072.XP_008880042.1
Preferred nameSTT3A
KEGG rclassRC00005,RC00482
KEGG koko:K07151
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009628,GO:0009651,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0047484,GO:0048583,GO:0050789,GO:0050896,GO:0065007,GO:0070085,GO:0071704,GO:0071944,GO:0080134,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.oligosaccharyl transferase activity
EggNOG OGsCOG1287@1,KOG2292@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003240.1
EC2.4.99.18
COG Functional cat.F
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.0928001-CDS-H-paniculata_contig7843:1577..16541622930976.0928001-CDS-H-paniculata_contig7843:1577..1654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7843 1578..1654 +
1691481534.9922347-CDS-H-paniculata_contig7843:1577..16541691481534.9922347-CDS-H-paniculata_contig7843:1577..1654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7843 1578..1654 +
1622930976.1064796-CDS-H-paniculata_contig7843:2606..27481622930976.1064796-CDS-H-paniculata_contig7843:2606..2748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7843 2607..2748 +
1691481535.002658-CDS-H-paniculata_contig7843:2606..27481691481535.002658-CDS-H-paniculata_contig7843:2606..2748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7843 2607..2748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7843.15869.1prot_H-paniculata_contig7843.15869.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7843 1578..2748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7843.15869.1

>prot_H-paniculata_contig7843.15869.1 ID=prot_H-paniculata_contig7843.15869.1|Name=mRNA_H-paniculata_contig7843.15869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
VNDGHAFAFDYMEPRAPKKGDMFAEGCERPCGDVAEKVCGCTDLACTGPN
PPGEQHNRRWAVYEMPVRGGRQ*
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mRNA from alignment at H-paniculata_contig7843:1578..2748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7843.15869.1 ID=mRNA_H-paniculata_contig7843.15869.1|Name=mRNA_H-paniculata_contig7843.15869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1171bp|location=Sequence derived from alignment at H-paniculata_contig7843:1578..2748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAATGATGGCCACGCATTTGCGTTCGACTACATGGAACCGAGGGCTCC
GAAGAAAGGAGACATGTTCGCCGAGGGGTACGTTGATCGATTGCGTCGTT
TTAATTTTTTTTTCTATTTTGTTTTACGAATGTACGATTCTCTATATTCG
TAGCATGATGTATCGATGAAACGACTTGGTTATTACGGTTTTAGTGTGCG
GCGATATTTCAGGTTAGAATTGATGGACTCAAACCCGAAGTGGCCATTGT
CATTTCCGGGTACCAAGTAGGTATTAGGCGCTGTTTGTGGCTAAAAATGT
ATGTTTTTTGCGCTTTTTGTCTGCTTGATTTTTTTGTTTCCCCAATTGTT
TTTCTGTTTTTTTGGGTTTCACGGGTTTTTGGTTGAGCTTGTTTGTGTTT
CGCTCGGTTTGGCGGCATTTGTTTTTGTGCTATACTTTTTTTTTTGTTTT
ATCGGTGGATGTTCGAGTGAACGTGACGTACGTGGTTAGTGAGCGACACA
CGGTCGAATGATACTTGGTGTATAATGTGACGCTCGTAACTGGCAATCCA
GGCACAAGCCTAATGTGAAACTGTGGTGATGGTTTTTTGCAATAAACAAT
GAAGCTGTTTTTTTGTAGGTTCTATTGCTTGTGAGGCCTTACTGGGGTGC
GGTCCAGCGTCCTCGCTACAGAAGAGCAGCACGCCGGGGTACCTTCATGC
CTTGGCTGTTGCTGCTTTTTAAATTCGAGTAACAATCATCTCCAGCTCAC
CTCGTTCTGGGACGCTGGCATCTAAAGGTTGACCCAAGCTTGCTACTGTC
CTGGTAGCGGTTTGTTGTCGCTCTTCAAGGTGTTTTCTCGTATCCTTTCC
GAACATCGTTGATTTTTTCTTGGCACATCACCCTCTGAAATTCATACCTT
TCTCTGATCCTTGTCCAGGGACACGCATCCCCCATTTGCCCCGGCGGCCG
CCTCATGATCCCATCTTTTATTTATTTTGGACATGCCCTGTCTTTCCTCT
CTCGATGTATCTCTTTTGCTCCTCAACAGATGCGAACGCCCCTGTGGAGA
CGTTGCAGAAAAGGTTTGCGGCTGCACCGACCTTGCCTGCACTGGTCCCA
ACCCCCCCGGTGAACAGCACAATCGCCGCTGGGCCGTATACGAGATGCCA
GTTCGGGGAGGGCGCCAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7843:1578..2748+

>mRNA_H-paniculata_contig7843.15869.1 ID=mRNA_H-paniculata_contig7843.15869.1|Name=mRNA_H-paniculata_contig7843.15869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig7843:1578..2748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAATGATGGCCACGCATTTGCGTTCGACTACATGGAACCGAGGGCTCC
GAAGAAAGGAGACATGTTCGCCGAGGGGTGAATGATGGCCACGCATTTGC
GTTCGACTACATGGAACCGAGGGCTCCGAAGAAAGGAGACATGTTCGCCG
AGGGATGCGAACGCCCCTGTGGAGACGTTGCAGAAAAGGTTTGCGGCTGC
ACCGACCTTGCCTGCACTGGTCCCAACCCCCCCGGTGAACAGCACAATCG
CCGCTGGGCCGTATACGAGATGCCAGTTCGGGGAGGGCGCCAGTAGATGC
GAACGCCCCTGTGGAGACGTTGCAGAAAAGGTTTGCGGCTGCACCGACCT
TGCCTGCACTGGTCCCAACCCCCCCGGTGAACAGCACAATCGCCGCTGGG
CCGTATACGAGATGCCAGTTCGGGGAGGGCGCCAGTAG
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