mRNA_H-paniculata_contig783.15857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig783.15857.1
Unique NamemRNA_H-paniculata_contig783.15857.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig783.15857.1 vs. uniprot
Match: A0A6H5JIG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.110e-27
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    4 ALLEEKAQRLQERARLHRHNRLLLTARKETGLLIQGAQERWNAKGRCIYGDAWDQPDNGNLPLR 195
            ALLEEKAQRL+ERAR+HRHNRL+LTARK  G L+ GAQERW+A+GR IYGDAWD P +GN+PLR
Sbjct:   53 ALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLR 116
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BLAST of mRNA_H-paniculata_contig783.15857.1 vs. uniprot
Match: D7FKK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.050e-25
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    4 ALLEEKAQRLQERARLHRHNRLLLTARKETGLLIQGAQERWNAKGRCIYGDAWDQPDNGNLPLR 195
            ALLEEKAQRL+ERAR+HRHNRL+LTARK  G L+ GAQERW+A+GR IYGDAWD P +GN+PLR
Sbjct:   53 ALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLR 116
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BLAST of mRNA_H-paniculata_contig783.15857.1 vs. uniprot
Match: A0A835ZJ30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ30_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.580e-12
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    4 ALLEEKAQRLQERARLHRHNRLLLTARKETGLLI--QGAQERWNAKGRCIYGDAWDQPDNGNLPLRQ 198
            A L+EK Q +Q+R ++H  NR++LTAR +T  ++  +G  + W+ KGR +YG AWD+P++GNLPLR+
Sbjct:   53 AALDEKIQAMQQRKKMHSTNRMMLTARTKTARVVDEEGGAD-WDEKGRAVYGSAWDEPNDGNLPLRE 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig783.15857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIG2_9PHAE6.110e-2776.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKK4_ECTSI2.050e-2576.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJ30_9STRA1.580e-1247.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig783contigH-paniculata_contig783:31740..31937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.6e-21
Seed eggNOG ortholog2880.D7FKK4
Hectar predicted targeting categoryother localisation
EggNOG OGs2EYZZ@1,2T0E5@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001760.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.1778839-CDS-H-paniculata_contig783:31739..319371622930974.1778839-CDS-H-paniculata_contig783:31739..31937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 31740..31937 -
1691481534.3572252-CDS-H-paniculata_contig783:31739..319371691481534.3572252-CDS-H-paniculata_contig783:31739..31937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 31740..31937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig783.15857.1prot_H-paniculata_contig783.15857.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig783 31740..31937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig783.15857.1

>prot_H-paniculata_contig783.15857.1 ID=prot_H-paniculata_contig783.15857.1|Name=mRNA_H-paniculata_contig783.15857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
KALLEEKAQRLQERARLHRHNRLLLTARKETGLLIQGAQERWNAKGRCIY
GDAWDQPDNGNLPLRQ
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mRNA from alignment at H-paniculata_contig783:31740..31937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig783.15857.1 ID=mRNA_H-paniculata_contig783.15857.1|Name=mRNA_H-paniculata_contig783.15857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig783:31740..31937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCATTGCTAGAGGAAAAGGCGCAGAGGTTGCAAGAACGCGCCCGGCT
GCACAGACACAATCGATTGCTTCTCACGGCTCGCAAGGAGACAGGACTTC
TGATTCAGGGAGCACAGGAACGGTGGAACGCAAAGGGAAGATGTATCTAC
GGCGACGCATGGGATCAACCAGACAACGGAAATCTCCCACTTCGGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig783:31740..31937-

>mRNA_H-paniculata_contig783.15857.1 ID=mRNA_H-paniculata_contig783.15857.1|Name=mRNA_H-paniculata_contig783.15857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig783:31740..31937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCATTGCTAGAGGAAAAGGCGCAGAGGTTGCAAGAACGCGCCCGGCT
GCACAGACACAATCGATTGCTTCTCACGGCTCGCAAGGAGACAGGACTTC
TGATTCAGGGAGCACAGGAACGGTGGAACGCAAAGGGAAGATGTATCTAC
GGCGACGCATGGGATCAACCAGACAACGGAAATCTCCCACTTCGGCAAAA
GGCATTGCTAGAGGAAAAGGCGCAGAGGTTGCAAGAACGCGCCCGGCTGC
ACAGACACAATCGATTGCTTCTCACGGCTCGCAAGGAGACAGGACTTCTG
ATTCAGGGAGCACAGGAACGGTGGAACGCAAAGGGAAGATGTATCTACGG
CGACGCATGGGATCAACCAGACAACGGAAATCTCCCACTTCGGCAA
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