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Homology
BLAST of mRNA_H-paniculata_contig783.15854.1 vs. uniprot
Match: D7FKK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKK1_ECTSI) HSP 1 Score: 158 bits (399), Expect = 9.700e-42 Identity = 95/254 (37.40%), Postives = 142/254 (55.91%), Query Frame = 2
Query: 65 MSSWKKMTAAVDVSAQKFLSNKRFSRERRTFTWDWHFWNLAIACTPGLLLWAWLHQVEKQVLEEERIRLEVQERTGVSSRGYMVPTKQAREEARDMLRKGNTKGRDLLHSGADGGGAATPVRVTSEAQKTSANDGQNTLTLQRFISHQRKLQQRLDAVEKKLGLESPTGSEETTSLHRIGTEPAREVLRSDNSPYNSEEANEDKGSALETLGKAAGKAVEVATVVGTWVVDVGLPQGIELYRTAREWLADDERK 826
M+ WK+ T AVD SAQ FL NK+FSRE+R FTWDWH WNLA TP L+L +LH VEKQ+LE+ IR E+QERTGVSSRG+++P K+ REE ML GN G ++G +GG + S + T++R +S +Q + G+++ +G ++L GT + + R ++ + +A+ G+ + TL +A +E + G+W++ G QG R W+A+DER+
Sbjct: 1 MAIWKRFTGAVDSSAQSFLKNKKFSREKRKFTWDWHAWNLAFVSTPSLVLAYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAGNQPG----NAGGEGGAGEQQLGHERHVPADSESIEGRLATIERMLS----MQGGSSSSTPGAGIDNGSGPMTDSTLS--GTSGSGQGKRVHSARNAASKADSSSGAEVSTLDRA----IETVSAAGSWLLQTGEAQGKXXXXXGRSWMAEDERQ 240
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-12_001790.1 |
| Exons | 5 |
| Model size | 1128 |
| Cds size | 879 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig783.15854.1 >prot_H-paniculata_contig783.15854.1 ID=prot_H-paniculata_contig783.15854.1|Name=mRNA_H-paniculata_contig783.15854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
MSSWKKMTAAVDVSAQKFLSNKRFSRERRTFTWDWHFWNLAIACTPGLLL WAWLHQVEKQVLEEERIRLEVQERTGVSSRGYMVPTKQAREEARDMLRKG NTKGRDLLHSGADGGGAATPVRVTSEAQKTSANDGQNTLTLQRFISHQRK LQQRLDAVEKKLGLESPTGSEETTSLHRIGTEPAREVLRSDNSPYNSEEA NEDKGSALETLGKAAGKAVEVATVVGTWVVDVGLPQGIELYRTAREWLAD DERKSAIASINLEAAAAASFSHRQSPHLRQQTRLLSSTYGRM* back to topmRNA from alignment at H-paniculata_contig783:14303..21148+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig783.15854.1 ID=mRNA_H-paniculata_contig783.15854.1|Name=mRNA_H-paniculata_contig783.15854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6846bp|location=Sequence derived from alignment at H-paniculata_contig783:14303..21148+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGCTAGCCAAGCCTTAGCCAAGCTACCACAGCGTGGAGCGTTCATTAATA
GCAACGAATGGATAATGTCTTCTTGGAAGAAGATGACAGCAGCGGTAGAC
GTGAGCGCCCAGAAATTCCTTTCCAACAAGAGGTTCTCAAGGTGAGTTGC
GTTTACAATGCAGTCCTAAATTTTGAAGCTAGCAAGTACTCCGCTATCTT
CTTGATGTGGGTGCAACCCTCCACAGCCCCTCAATACGCTATATCCATAG
CTGCATGTTACATTTCGCAACTATTCACTTCTCTAGCATGGCGGAATCAG
TTATTGCAGGCATGCATCTCCTGGTGAGGAGCTTCTTGGTAGTTATCAAC
GATGGTTCTCAGTCGATGTGCGCTTGCCAGACACCATCTGACATGTCTAT
GACGGAGGATAACACCCCCACTCCCGCATAATGACACTTTTCCCTAACTA
TTTTCAGTATTGTATCTTCATTTTTCTTCTAGGTACAACAGCAGTAACTT
TAAAATGTGTCGTCCCCTCAACCCCACAGTTACAAAACATAATTAATCAT
GTTATTTATTTTTAAGTAATAGGGTGTTTGCGAAAACAATCATTTGCTCC
AAGTTTCAACACACATACATACCAGCACATTTTCCGTTGGCCGCGGTCGA
TGATTTTGTCAGTAATCCAAATCCTAAAAACGCGTTTGCGAAGATCTCCA
AATTTGATAAGCTTGACAAATTTCTACAGATCAGGTTAAGGTTCTTGTTG
TCAAGTATAAATGCTTCTCAGAACGTTCCACCTTAGGCCAACTTTAATGC
CCCAAAGTAGACCAAGTTTACGGAGGTGCGCTCATACTCTAAAATCAACA
CTTGACGAACAGGTGAAGGATCCACAGCTACCGATTCGACCAGGTATTGT
CGTGCTGAGATAGTTCCGAATTCGCGTCGAACGTCGTTGCCCTTCATTGA
CGCCTTTATCTGTCTTTATCTGAGGTGTGCAAATTTCTTAACAGATGGAA
TATACTGTATCCAGGCGCTTCTCGTGTGCTGCTGTCTCTCTTGCATTTGT
ATGTCAATACGAAAGACTACCCACAGCAAACCCATATGCTCACTTATGAA
TACTTAGTGTATTCGCCACGAAAATGAAGAAGTATTCGCCTGAGATTCAG
AATGAGCCGACACATAGAACGAAATACCCACCCTGGTCCATTCGATTTAC
GAGCATTATTAGCAGTCGTGGATAGTCCAAGTCACTTAAAATTCACAAGC
TCATTCTGGACCTCAGGCGATTACTTCTAATTTTCATGGCGAGTACGCCA
AGTATTCGTGTTTGTCCGGGGGGTGAACATGTTCCTTCCACAAACAAGCA
TCCATGCCAACCTAGCACTGCTGTATGAGCAGGCAAGCCCTGGGTGAGCA
CGCTAGACACAAACACTAGTACAGGCAGATAACACAACGGCAGTTTCCGG
ACTACAGCGCGGTATTAGGTACTCTGTGGCAACGAACTGTTGCATGTGCT
ACGCAGCATCAGCGCGCAAAACGCATATTGTCTGTAGTTAACCGCCAATG
GCATGCCAAGCGAACGCACAGAGTCATGCGTGATTGCGATCAACAGCACA
CCACAGTGAACGGACACACACCCCGCAGCCTTTGCAATGGTATGTGTAGC
TGGGAGCATGGCAAGGATTTAGGCGCCATCAATCGATCAACAGGAAAGAA
AGATCTTGGCATGGGCAAAAACTTGAACAATCGCTACAGCAATGCATGCA
TAAATTGTACAGCTCACAGACAGATGGTAGTCTACAAATGACGAGTTGGT
GTTGTTTCAGGCATCGGTTCTTCCTCGGGTAGTGTTGCCTAACCACCTGA
TATTCCGAATATCACTCTCACGGATTCGAATTTGACTTCAACTTTCAGAG
GTTTATGAGATTTTACGAAATACCAAATCGAGATTTAAAAAAACAAACTG
TGCCCTCGCTAACAGATGAACAACATAATTAAATTTTTGATACCCATTTT
TGTTTTGGCAAACACTTTCACCAATATATATATATATATATATATATATA
TTCGAAAACGATACACGATGTGCCACGTGTATATACGCACTGCACGCAAT
CATGTTCGTCTTCACTAGTTTGTCGTAATGCATCGGGGCAGGCTCACCGG
CGCATCCCAGACACGCAACCCTGCCCACCGCGATCTTCAGAGCGAGCGAC
AGATGGCAACATATAGAACACACAGCAAATTCTACCTCTACAATAGAAAC
AATGTGTCATTTAGGTCAAATCAGCTATTTCGTTGCACCACCTTCCCCAA
GTCGCGGATTCGAACCCCGCGCTTCATGCATTCATGCAAATCAAAAATCA
GTCTCATTCCCGGACTTGCAACCAAATGAAAACCACGTCCATTTGTCTTT
ATCGTCCCCCGAACATAACAAGTATAGACCACAGTGGATCAATTTATATT
GGTGATTTTGTGTGGACTTCATCGCATCTCTGGTTCTGCAGTCTCCAGTC
ATGCGAAACCATACCCCATCGGAACCATATCGTCGGAATTTGTCGATAGA
CTGGCTCTTTCGACAACAGACCATGCAGGGTTTTGTTTTGAAGAACATCA
AGTTGAGAAGAGCCATCATCTAAGGGGTGCTTTCCTACGCCATTCCACAG
TACCACTTTAACCACACATGTATGATGTGCACGTAACTCCGTCACTTGTA
GAGTGTGAATAATTTTGTATCGGCTATAATCGTCCTGCGCCATAGGTGCC
ATTGCTCTCACTATTTCCTGATCTCATCTTTCATATCTTGCTGTTCTCGA
CGGCGCTGACCACACGCAGGGAGCGAAGGACGTTCACATGGGATTGGCAC
TTCTGGAACCTCGCGATTGCCTGCACACCCGGCCTGCTGCTGTGGGCGTG
GCTACACCAAGTGGAGAAACAAGTCCTCGAAGAGGAGAGGATCCGGCTTG
AGGTACAGGAAAGAACCGGCGTGAGCAGTCGCGGGTACATGGTGCCCACC
AAGCAGGCGAGGGAGGAAGCTAGGGATATGTTGCGGAAGGGCAACACAAA
GGGAAGGGATTTACTACATTCGGGGGCGGATGGAGGGGGGGCAGCAACAC
CAGTACGCGTCACGTCAGAGGTGTGAAGTAAAAAAATAAGCTTCTGTTTG
TTTTATGCACAAATTGAGTACTGTAAAGATGAGCCAATTGCTTGTTCGTG
TTGTCAGAAGGCATTTTATTGTGCACGAGTGTTTTGCCTTGCCTGTGCAT
ATTGGTTGAAACGATTTATACATTTATACCCGCCCTCGCATCTGACGTTA
CTCGAGGTACAACTAACTCAATCAGTATTCGCTCTGAATACGGGAAGTAA
AGTGCGGTCTAGTGAGATCATCATATGCTGAGAGGAGTCCTTTCTACTTC
GCACGTATGGTACGATTGTTGTACACGACTTTGGCGCTCTGGTTTTCGGG
AGGAGGTGCAGGTCGTTTTGCATCTGAATATGCAAATTGAGTCTGAAACC
ATCAAGGGGGGAAACGTGTTTTTTCTTCATGTGTGGCTTTTCACACAGGA
CAGCGCCATGACAGATGGTTATTGAACTAAAAACCAAACGCTATATTGTA
GTCCGATCATCCCTTGTGTCAAGATTGATGGTTATAATGATGTGGATTGC
CTGGGAGTACGTAAAAACCCATTTTAGTCACTGCAGTGGATGCCTATGCC
AAATCCCGAGCTGGGTTCATCGCTGACCCTCCTCCACCACGTTTACACGA
TACGCCTGGGACGGTCGACCTAGGCTCAGAAGACCAGTGCTAACGACGGA
CAAAATACGCTCACGCTCCAGAGATTCATATCGCACCAGCGAAAGCTGCA
GCAGCGCTTGGATGCGGTCGAGAAAAAACTGGGTTTGGAAAGCCCGACAG
GCTCTGAAGAAACAACCTCGCTTCACCGAATAGGTACAGTAACTGCGAGA
TTTTAGGGGGGGTTGGTGCCATGTTTGTTGAATCCAGTAGCGTCACGGAA
GCTACTACTTGCTTTACCGTGCGCGTTTCAGTTGTCGTGCGGTTGTAGAT
GTATGCTTGATGAAAAAAAGCGCTGTTCACTGATCACGTGAGGCAACCGT
TTTCCTAGGCAAGATTCAACGAATTATGTATGAACTATTGTGGCGCATCA
ATTTTCCTTTTACCTGTAAACACTCTTAGGTACAGAACCTGCGCGAGAGG
TCTTGCGAAGCGATAACTCACCATACAACAGCGAAGAGGCTAATGAAGAC
AAGGGCTCGGCACTAGAAACACTGGGGAAGGCTGCAGGCAAAGCAGTAGA
GGTGGCAACCGTGGTGGGGACTTGGGTTGTGGACGTGGGGTTGCCACAGG
GCATCGAGCTGTACCGCACGGCTAGAGAATGGCTCGCGGACGATGAACGC
AAGTCCGCTATTGCGTCCATAAATTTAGAAGGTAATCAGGATGATGATGC
AGCGAACAGTTCGGGCGACCAAGCAGGATTAGAAGCGAAGGACACGAGGT
GGAACAATGGGGGGTCGAGGAAGAGCAAAGAAGATCAGGCCAACAATAGC
GGCAATGAGAAAGGGTAGGGCCCATTTGAAGGTCATGTTGGTGAACAATA
CAAGAGTAGACGATGATGTTTCTATCGAGTATGGTAGACCGCAAATTCAT
TTTCGATGTTGAATTCGGTATTAGATCCTTGAGAGTTTGTCCGTCTCGTT
CTGCAATCGTCTTTTCTTCTCCTGGAGATTGTCTCCACGTTTAAAGTACA
AGCGATCGCGCCATCGATTGCCATGCGTATTTTTTCGGAGGCACAAACAT
CAGGGCATAACTTTGGTCGTGATATGTTTGGCTACACCACAACAGGTACA
TCGCAAGCTCGAGGTATAGAGCGATCGCTTAGCGTTGGGAGAGTATCATG
AATGACCGTCTCATCGACATGACCGCTTCCCATGTATTTATACATCTGTA
CATTCTCAAGATACGAACAATCAATTTGGCAAACCCTCACATTCCGCTAC
AAGCTAACGGCAAAATCATTCCGACCACGGTGTCCTTGTTCCGCCTCTTT
GAGCAATTTGCTTGTTACCAGATCCGTAGCGCCCATTCCTTTCGCATCTC
CTTTCTCGGGCACCGACACGCTGCCCTGTGGCACGTCTACAGCAGTAGCG
CAAAAAAAGGCCACTTTGGGTGAATCACGCACCGCTCGGATTTTAAAACC
GGCTGTTTTCAAGGTTGCCGCAAACGAAACCCGCGTGGTGTGTTTGCTAT
TGGTGAGACAGAGAAGCGGAAGCATCAGAAAGAGGTGTCCACCCTGTCGG
AGATGCGCGCGGTAGCCTAGTAGCATGTCCCCTCGTCGTTTTGCCGTCGG
AACGCAGTTGATGACCATACTGCAGAGATATTTACAGGCAGGCGGAAGGA
TCAAGTTGAGCTACTAGAATCGCATTGCTGAACAGTGAGGAACAAGTGTG
CTTTGACATACCGCCTTGTACGTGAACGGTATTTTTAATACAAGGACGCG
ATTGTGGACACATGGACCGAGATCAGCAGTCCCTACTGCACAGATAAATC
AACAAACCCGTGACAACATTGTGTTCGTTCATAGGTAATATGCATTCTGG
AAATCTGGGTAGGACCGCGAAATTCGTACCAGTTCTTGAAAAAATTTCAC
ATCAAGTTCAGGGCGGGTACAAATTCAGCGACGATTTGATCGACTCCCTC
CACGTAGTTACGAATCGTCGGACAGTACTAGGCAGCCAGTTGTTTGTCCT
CTTCACACTGCGCTCACCTAGAGGACACGACATCGTATTCTCCTGCCGGT
TGCAGCGAGAAAAAGTCTCGCTCCTCGATGCGCTGATGCTGAGACTTGAG
GTCGATAGCCCGCACATCCAACCACGGTACGTCCAACAGCCGAGTGTTGA
TAGCGCCCACCTTATAAGACATGAAGAAAAGGGACACATACAACGGGTTT
CGATTGGTAGTAAACGTTTCTCTATCTGTGCCGCAGTGCAAGCAGCGCTG
CACAAACTCGCTGTCCTCTATCATGCTTCTGACGACGGAACACTGGCATG
AGGGACGTCACAACTGCCCAAGACAAGATATGCAACCAGCAAACAATTGA
GCACAATAAAACCCATGCAGTCCAAGCGTGGACAGTCCTACGCAAAGTTA
GCCGCTAACGTATACATGTTGAGGCAGAGGAGGCAAATGCAACGTCGCTG
TGGGATAATGCACGGAAGAAGCTTGCTTCCGTGAAGCCGTGACGTGCTCA
GCTGACCCAACCTGCCTTTACGACCGTTCACGGTGCCACAGTTTTCATCA
TGGAACAGTGAGGTCATCTTACAGTTACACATTGATAAAAGACTACAAAC
TGAAAAATTACAACCACAACCGGCGCCAATCAGTACACGTCATGCCATCA
ATCACCATCACACCTCAAGAACTCTCAGGCGAGGTTGCCCCCTCTGCGGC
CGTAAATCCAACTTGGTAAGCTGTTGTGTCACCCACTTTGATGTGTTGTG
AAAACTAACCGACAGCAAACTCGCGCTTTGATATGCCTGTCGTCCGCCCA
TTTCCTCTATTTCGCGCTGCAGCCGCTGCAGCTGCCTCTTTTTCTCATCG
TCAGTCGCCGCACCTGAGGCAACAAACTCGGCTTCTTTCGTCAACCTATG
GAAGGATGTGACGATCTTTCTCGCTTTGCGACGAGATTTTACCGGCAGCG
GCAGCTACTTTTGCGACATTGTAACAGTGGACAGTGGGAGGGCGACACAT
GGGGGCGGTGCCTCAGCTGAAATCGGCACCAACAAGTTATGAAGAGCAGG
GTGGTATTGAGAAGCTGGAAATGACTTTACGGTACTGCACTATACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig783:14303..21148+ >mRNA_H-paniculata_contig783.15854.1 ID=mRNA_H-paniculata_contig783.15854.1|Name=mRNA_H-paniculata_contig783.15854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig783:14303..21148+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCTTCTTGGAAGAAGATGACAGCAGCGGTAGACGTGAGCGCCCAGAA ATTCCTTTCCAACAAGAGGTTCTCAAGATGTCTTCTTGGAAGAAGATGAC AGCAGCGGTAGACGTGAGCGCCCAGAAATTCCTTTCCAACAAGAGGTTCT CAAGGGAGCGAAGGACGTTCACATGGGATTGGCACTTCTGGAACCTCGCG ATTGCCTGCACACCCGGCCTGCTGCTGTGGGCGTGGCTACACCAAGTGGA GAAACAAGTCCTCGAAGAGGAGAGGATCCGGCTTGAGGTACAGGAAAGAA CCGGCGTGAGCAGTCGCGGGTACATGGTGCCCACCAAGCAGGCGAGGGAG GAAGCTAGGGATATGTTGCGGAAGGGCAACACAAAGGGAAGGGATTTACT ACATTCGGGGGCGGATGGAGGGGGGGCAGCAACACCAGTACGCGTCACGT CAGAGGGAGCGAAGGACGTTCACATGGGATTGGCACTTCTGGAACCTCGC GATTGCCTGCACACCCGGCCTGCTGCTGTGGGCGTGGCTACACCAAGTGG AGAAACAAGTCCTCGAAGAGGAGAGGATCCGGCTTGAGGTACAGGAAAGA ACCGGCGTGAGCAGTCGCGGGTACATGGTGCCCACCAAGCAGGCGAGGGA GGAAGCTAGGGATATGTTGCGGAAGGGCAACACAAAGGGAAGGGATTTAC TACATTCGGGGGCGGATGGAGGGGGGGCAGCAACACCAGTACGCGTCACG TCAGAGGCTCAGAAGACCAGTGCTAACGACGGACAAAATACGCTCACGCT CCAGAGATTCATATCGCACCAGCGAAAGCTGCAGCAGCGCTTGGATGCGG TCGAGAAAAAACTGGGTTTGGAAAGCCCGACAGGCTCTGAAGAAACAACC TCGCTTCACCGAATAGGCTCAGAAGACCAGTGCTAACGACGGACAAAATA CGCTCACGCTCCAGAGATTCATATCGCACCAGCGAAAGCTGCAGCAGCGC TTGGATGCGGTCGAGAAAAAACTGGGTTTGGAAAGCCCGACAGGCTCTGA AGAAACAACCTCGCTTCACCGAATAGGTACAGAACCTGCGCGAGAGGTCT TGCGAAGCGATAACTCACCATACAACAGCGAAGAGGCTAATGAAGACAAG GGCTCGGCACTAGAAACACTGGGGAAGGCTGCAGGCAAAGCAGTAGAGGT GGCAACCGTGGTGGGGACTTGGGTTGTGGACGTGGGGTTGCCACAGGGCA TCGAGCTGTACCGCACGGCTAGAGAATGGCTCGCGGACGATGAACGCAAG TCCGCTATTGCGTCCATAAATTTAGAAGGTACAGAACCTGCGCGAGAGGT CTTGCGAAGCGATAACTCACCATACAACAGCGAAGAGGCTAATGAAGACA AGGGCTCGGCACTAGAAACACTGGGGAAGGCTGCAGGCAAAGCAGTAGAG GTGGCAACCGTGGTGGGGACTTGGGTTGTGGACGTGGGGTTGCCACAGGG CATCGAGCTGTACCGCACGGCTAGAGAATGGCTCGCGGACGATGAACGCA AGTCCGCTATTGCGTCCATAAATTTAGAAGCCGCTGCAGCTGCCTCTTTT TCTCATCGTCAGTCGCCGCACCTGAGGCAACAAACTCGGCTTCTTTCGTC AACCTATGGAAGGATGTGACCGCTGCAGCTGCCTCTTTTTCTCATCGTCA GTCGCCGCACCTGAGGCAACAAACTCGGCTTCTTTCGTCAACCTATGGAA GGATGTGA back to top
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