mRNA_H-paniculata_contig7816.15841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig7816.15841.1
Unique Name	mRNA_H-paniculata_contig7816.15841.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A6H5L297_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L297_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 9.530e-101
Identity = 230/592 (38.85%), Postives = 304/592 (51.35%), Query Frame = 2

Query:   68 KIESSCEVRPSQVGAGLGTFASRDLTAGEHIFAEFAFLIANPHTRSRPPAKLCAD-----LSAICIQQGSLPPCIRLATNDTGGVLSGSLDSYC-FAQAY--ARASMEERREVLLLSAPGGDDT-------------------------HAIVRVVRAEVVVLRNMDAEIRAISPNELERAILR-----YWANTFGREGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLSRFHPSQSNAATCGGRPSGDKGTISTPWSRMLPLGSLEEIVPETSTEEAFADWWNESGIWVCRWCGWCSD---------PAGALHRREGALSAEIFSLVMAQTIAEEDGQSGLSSTERRDRLEEDKNGGGVWALR---EADSRRLASTIEDLLRVSVGTLGRRHWVTFCCLLLRLELDMVQLESGT------SALPTSTTLAA----LDRAMIDLNGIWEWL--ELTPVTL-PPESYLFDVVCAMAVEGLGRGRGCW-----GAARELLTRVDAWASAFADSHQR 1639
            + +  CE++ S V AG G FA++DL  G+ +F E AFL+     R    A++ A      LS I +Q    PPC+RLA  DTGG+L G  +  C FA AY  + AS+  R + L  +    D T                         +AIV +VR EV  LR  D ++R +   ELE A+ R     YWAN  G+EGSL+ RGSRFNHSC  NCT       G           ++ F+TLRPVA GEELTLSYLPS +EVMGTVVRRRHLWLSRGF+CSC  CS  QD +R+V CP+C           S S     G   S ++ +           G      PE   E  FA+WW +S +WVC++CGWCS+         P+ +LH +E  +SAE+F+LVMA T+   D +S  +S        + ++G   W      +  +RR A  I+ +L  SV  LGRRHW TF C  LRL+L++    +        S  P S++L      LD AM +LN + +WL   L  VT  PP  Y+FD+VC +    L   RGC      G  + LL RV+AW   FAD  QR
Sbjct:    7 EADGCCEIKASCV-AGQGLFATKDLVTGQVLFKETAFLVPG---RRDAAAEIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGILRGCYEETCRFALAYLSSTASIRSRVQELSPNMTPADTTXXXXXXXXXXXXXXXXXXXXXXXNSNAIVTLVRREVAWLRKCDRDLRRLPSRELEGAVHRQDRFTYWANCMGQEGSLYERGSRFNHSCTANCTRVTLDDGG----------VERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKNYNSPLERRSSSGGRVVGSSRSAERHSAPACRDGGPYNGDGRRRRPEA--EAVFAEWWKQSEMWVCQYCGWCSNIDSTCSDSAPSRSLHCKESIVSAEVFALVMAHTV---DPRSPSASCTNM--ALDGRSGSRGWPHHPDEQLQARRDA--IKGILETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGQRRPRSGSPHSSSLRIQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDL----LDATRGCSARNTVGGLQLLLGRVEAWVLVFADEDQR 571

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: D8LNS6_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS6_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.010e-64
Identity = 156/395 (39.49%), Postives = 200/395 (50.63%), Query Frame = 2

Query:   68 KIESSCEVRPSQVGAGLGTFASRDLTAGEHIFAEFAFLIANPHTRSRPPAKLCAD----LSAICIQQGSLPPCIRLATNDTGGVLSGSLD-SYCFAQAY--ARASMEERREVLLLSAPGGDDTH--------------------------AIVRVVRAEVVVLRNMDAEIRAISPNELERAILRYWANTFGREGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLSRFHPSQSNAATCGGRPSGDKGTI---STPWSRMLP--LGSLEEIVPETSTEEAFADWWNESGIWVCRWCGWCSDPAGALHRREGALSAEIFS 1138
            + +  CE++ S V AG G FA++DL  G+ +F E AF +  P  R        +     LS I +Q    PPC+RLA  DTGGVLSG  + +Y FA AY  + AS+  R + L  S    D                             AIV +VR EV  LR  D ++R++   EL  A+ RYWAN  G+EGSL+ RGSRFNHSC  NCT       G           ++ F+TLRPVA GEELTLSYLPS +EVMGTVVRRRHLWLSRGF+CSC  CS   D +R+V CP+C        ++  Q   ++ GGR  G   +    STP  R      G      PE  T   FA+WW +S +W   +  W      AL +  GA    + S
Sbjct:    7 EADGCCEIKISCV-AGQGLFATKDLVKGQVLFKETAFFLV-PGRRDDAAVVAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFALAYLSSTASIRSRVQELSSSMRPADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVTLVRREVAWLRKCDRDLRSLPSRELVGAVHRYWANCMGQEGSLYERGSRFNHSCTANCTRVTLDGGG----------VERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPHDEVRQVVCPEC-----CKGYNSPQERRSSSGGRVVGSSRSAEGHSTPTCRDGGPYKGGGARRRPEEET--VFAEWWKQSEMWP-EFLDWAMRELNALEQWLGAALGPVTS 381

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A7S4V5D1_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V5D1_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 3.420e-9
Identity = 62/215 (28.84%), Postives = 95/215 (44.19%), Query Frame = 2

Query:  566 GSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLSRFHPSQSNAATCGGRPSGDKGTISTPWSRMLPLGSLEEIVPETSTEEAFADWWNESGIWVCRWCGWCSDPAGALHRREGALSAEIFSLVMAQTIAEEDGQSGLSSTERRDR 1210
            GS+F+HSC PNC+             S   +    +  +RP+A G+ LT SY+ + + +M + V RR    S  F+C C+ C+   D +R+++CP C +   L  +          GGR +G  G     W+   PL    E+VP+ ++             W CR CG  S PA A+   E     E+    M Q  AE  G+  +   + R R
Sbjct:  204 GSKFSHSCAPNCSW------------SFGASGCLQYHAIRPIAPGDLLTFSYIGNGMNLMVSTVERRRRLSSLWFVCQCSRCA-GPDLVRQMRCPSCGAPRCLPDYGGE-------GGRQAGASGD----WAAGRPL---HELVPDAAS-------------WSCRACGGAS-PASAMPLGEEEELGELVPRAM-QGAAEHAGRDSVILAQLRAR 376

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A812RAB1_9DINO (Smyd3 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812RAB1_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 8.810e-9
Identity = 75/264 (28.41%), Postives = 106/264 (40.15%), Query Frame = 2

Query:   86 EVRPSQVGAGLGTFASRDLTAGEHIFAEFAFLIANPHTRSRPPAKLCADLSAICIQQGSLPPCIRLATNDTGGVLSGSLDSYCFAQAYARASMEERREVLLLSAPGGDDTHAIVRVVRAEVVVLRNMDAEIRAISPNELERAILRYWANTFGREGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLS 877
            E+R ++ G G   +A  DL   + +  E  F    P        +   D SA    +   P  +    ++    L  S         +A+     R  +L  S P  D  H +V V      + +    E +A     L+  IL    N F   G +    SR NHSC PNC           AP            TLRP+ +GEELT+SYL  +L ++ T  RR  LW S+ F+C C+ C  ++D LR   C  C  R  LS
Sbjct:   78 EIRTAE-GQGKSAYALGDLPGNQILLEEEPFYTRTPPAELHGRPEWDEDWSA-AFTRIKAPMRLPGGESEKEKPLLASTALVRDVLGFAKMPESLRGALLSFSFPALDLEHGLVDVALQLAKLCKERLPECKAFEVEWLQIGILVTEMNIFPG-GRVFWTMSRINHSCAPNCVFTN-------APGRWG------LRTLRPIRKGEELTISYLGEEL-LLPTGQRRWLLWRSKCFICQCSRCRSSEDPLRDRACI-CLGRAPLS 323

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A812PIX4_SYMPI (Smyd3 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812PIX4_SYMPI)

HSP 1 Score: 69.3 bits (168), Expect = 1.020e-8
Identity = 55/159 (34.59%), Postives = 75/159 (47.17%), Query Frame = 2

Query:  371 RREVLLLSAPGGDDTHAIVRVVRAEVVVLRNMDAEIRAISPNELERAILRYWANTFGREGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKC 847
            R  +L  S P  D  H +V V      + ++   E +A     L+  IL    N F   G +    SR NHSC PNC    T S G           +    TLRP+A+GEELT+SYL  +L ++ T  R+  LW S+ F+C C  C+  +D LR   C
Sbjct:   24 RGALLSFSFPRLDLEHGLVDVALQLAKLCKDRLPECKAFEVEWLQTGILVTEMNIFPG-GRIFWTLSRINHSCAPNCVF--TNSPG-----------RWGLRTLRPIAKGEELTISYLGEEL-LLPTSQRKWLLWRSKCFVCQCLRCTSTEDPLRDRAC 167

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A812VJQ2_9DINO (Smyd3 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812VJQ2_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 4.440e-8
Identity = 58/169 (34.32%), Postives = 77/169 (45.56%), Query Frame = 2

Query:  371 RREVLLLSAPGGDDTHAIVRVVRAEVVVLRNMDAEIRAISPNELERAILRYWANTFGREGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLS 877
            R  +L  S P  D  H +V V      + +    E +A     L+  IL    N F   G +    SR NHSC PNC           AP            TLRP+ +GEELT+SYL  +L ++ T  RR  LW S+ F+C C+ C+ ++D LR   C  C  R  LS
Sbjct:  385 RGALLSFSFPALDLEHGLVDVALQLAKLCKERLPECKAFEVEWLQIGILVTEMNIFPG-GRVFWTMSRINHSCAPNCVFTN-------APGRWG------LRTLRPIRKGEELTISYLGEEL-LLPTGQRRWLLWRSKCFICQCSRCTGSEDPLRDRACI-CLGRAPLS 537

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A812LZV2_9DINO (Smyd3 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812LZV2_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 5.070e-8
Identity = 57/169 (33.73%), Postives = 77/169 (45.56%), Query Frame = 2

Query:  371 RREVLLLSAPGGDDTHAIVRVVRAEVVVLRNMDAEIRAISPNELERAILRYWANTFGREGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLS 877
            R  ++  S P  D  H +V V      + +    E +A     L+  IL    N F   G +    SR NHSC PNC           AP            TLRP+ +GEELT+SYL  +L ++ T  RR  LW S+ F+C C+ C+ ++D LR   C  C  R  LS
Sbjct:  171 RGALMSFSFPPLDLEHGLVDVALQLAKLCKERLPECKAFQVEWLQVGILVTEMNIFPG-GRVFWTMSRINHSCAPNCVFTN-------APGRWG------LRTLRPIRKGEELTISYLGEEL-LLPTSQRRWLLWRSKCFICQCSRCTSSEDPLRDRACI-CLGRAPLS 323

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A7S1LTZ7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LTZ7_ALECA)

HSP 1 Score: 63.9 bits (154), Expect = 4.430e-7
Identity = 43/107 (40.19%), Postives = 52/107 (48.60%), Query Frame = 2

Query:  551 SLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTR 871
            +++   SRFNHSC PN T     S G           +    TLR VA GEELT+SYL  ++ V  T  RR  L    GF C C  C+ A D LR  +CP C    R
Sbjct:  266 AVYRTASRFNHSCGPN-TEKSFSSDG-----------RVSLRTLRDVAVGEELTVSYLGDEMLVRCTARRRFPLTNGWGFHCQCERCAAASDALRAFRCPSCGGEVR 360

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A7S0FXD4_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FXD4_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 6.470e-6
Identity = 48/170 (28.24%), Postives = 74/170 (43.53%), Query Frame = 2

Query:  566 GSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLE-VMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLSRFHPSQSNAATCGGRPSGDKGTISTPWSRMLPLGSLEEIVPETSTEEAFADWWNESGIWVCRWCG 1072
            GS+F+HSC PNC+             S +      +  +RP+A GE  T SY+ + +  VM T+ RRRHL  S  F+C C+ C    D  RR++CP+C +   L ++                ++   S  W+   P+    E++P+  T             W C  CG
Sbjct:  236 GSKFSHSCAPNCSW------------SFSEEGYLQYRAIRPIAPGELFTFSYVGNGMSLVMSTLGRRRHLG-SLWFVCQCSRCL-GPDLTRRLQCPECGAPKLLPQY---------------AEQDGTSIDWTAARPMS---EMIPDAPT-------------WSCGLCG 360

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BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Match: A0A7S2Q722_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q722_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-5
Identity = 39/107 (36.45%), Postives = 52/107 (48.60%), Query Frame = 2

Query:  545 EGSLHARGSRFNHSCVPNCTHAETRSTGDPAPTSTATATKKIFLTLRP---VARGEELTLSYLPSKLEVMGTVVRRRHLWLSRGFMCSCTLCSEAQDHLRRVKCPDC 856
            +G+++   SRFNHSC PN +     + G               LTLR    VARGE+LT SYL     +  T  RR  L    GF C C+ C+ + D +R  +CP C
Sbjct:  160 QGAVYNLCSRFNHSCAPNVSKHFDAAEG---------------LTLRTFCDVARGEQLTFSYLDYAGLLRPTNHRREALRQGWGFTCLCSRCTSSADEMRTFRCPRC 251

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig7816.15841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5L297_9PHAE	9.530e-101	38.85	SET domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LNS6_ECTSI	2.010e-64	39.49	Set domain protein n=1 Tax=Ectocarpus siliculosus ...	[more]
A0A7S4V5D1_9DINO	3.420e-9	28.84	Hypothetical protein n=2 Tax=Alexandrium monilatum...	[more]
A0A812RAB1_9DINO	8.810e-9	28.41	Smyd3 protein n=1 Tax=Symbiodinium necroappetens T...	[more]
A0A812PIX4_SYMPI	1.020e-8	34.59	Smyd3 protein n=1 Tax=Symbiodinium pilosum TaxID=2...	[more]
A0A812VJQ2_9DINO	4.440e-8	34.32	Smyd3 protein n=2 Tax=unclassified Symbiodinium Ta...	[more]
A0A812LZV2_9DINO	5.070e-8	33.73	Smyd3 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta...	[more]
A0A7S1LTZ7_ALECA	4.430e-7	40.19	Hypothetical protein (Fragment) n=1 Tax=Alexandriu...	[more]
A0A7S0FXD4_9DINO	6.470e-6	28.24	Hypothetical protein n=1 Tax=Pyrodinium bahamense ...	[more]
A0A7S2Q722_9DINO	2.010e-5	36.45	Hypothetical protein (Fragment) n=1 Tax=Brandtodin...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig7816	contig	H-paniculata_contig7816:550..4342 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	60.5
Seed ortholog evalue	3e-06
Seed eggNOG ortholog	38833.XP_003059373.1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	SET domain
EggNOG OGs	COG2940@1,KOG2084@2759
Ec32 ortholog description	SET domain protein
Ec32 ortholog	Ec-08_006000.1
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	1793
Cds size	1704
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig7816.15841.1	prot_H-paniculata_contig7816.15841.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig7816 614..4317 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930971.9385347-UTR-H-paniculata_contig7816:549..613	1622930971.9385347-UTR-H-paniculata_contig7816:549..613	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig7816 550..613 -
1691481533.2714355-UTR-H-paniculata_contig7816:549..613	1691481533.2714355-UTR-H-paniculata_contig7816:549..613	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig7816 550..613 -
1622930972.0021448-UTR-H-paniculata_contig7816:4317..4342	1622930972.0021448-UTR-H-paniculata_contig7816:4317..4342	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig7816 4318..4342 -
1691481533.2978399-UTR-H-paniculata_contig7816:4317..4342	1691481533.2978399-UTR-H-paniculata_contig7816:4317..4342	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig7816 4318..4342 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930971.960488-CDS-H-paniculata_contig7816:613..1823	1622930971.960488-CDS-H-paniculata_contig7816:613..1823	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig7816 614..1823 -
1691481533.2809587-CDS-H-paniculata_contig7816:613..1823	1691481533.2809587-CDS-H-paniculata_contig7816:613..1823	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig7816 614..1823 -
1622930971.9772682-CDS-H-paniculata_contig7816:3823..4317	1622930971.9772682-CDS-H-paniculata_contig7816:3823..4317	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig7816 3824..4317 -
1691481533.2892833-CDS-H-paniculata_contig7816:3823..4317	1691481533.2892833-CDS-H-paniculata_contig7816:3823..4317	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig7816 3824..4317 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig7816:550..4342-
coding sequence from alignment at H-paniculata_contig7816:550..4342-

protein sequence of mRNA_H-paniculata_contig7816.15841.1

>prot_H-paniculata_contig7816.15841.1 ID=prot_H-paniculata_contig7816.15841.1|Name=mRNA_H-paniculata_contig7816.15841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=568bp
MRMPVGEAMDTVEKKIESSCEVRPSQVGAGLGTFASRDLTAGEHIFAEFA
FLIANPHTRSRPPAKLCADLSAICIQQGSLPPCIRLATNDTGGVLSGSLD
SYCFAQAYARASMEERREVLLLSAPGGDDTHAIVRVVRAEVVVLRNMDAE
IRAISPNELERAILRYWANTFGREGSLHARGSRFNHSCVPNCTHAETRST
GDPAPTSTATATKKIFLTLRPVARGEELTLSYLPSKLEVMGTVVRRRHLW
LSRGFMCSCTLCSEAQDHLRRVKCPDCTSRTRLSRFHPSQSNAATCGGRP
SGDKGTISTPWSRMLPLGSLEEIVPETSTEEAFADWWNESGIWVCRWCGW
CSDPAGALHRREGALSAEIFSLVMAQTIAEEDGQSGLSSTERRDRLEEDK
NGGGVWALREADSRRLASTIEDLLRVSVGTLGRRHWVTFCCLLLRLELDM
VQLESGTSALPTSTTLAALDRAMIDLNGIWEWLELTPVTLPPESYLFDVV
CAMAVEGLGRGRGCWGAARELLTRVDAWASAFADSHQRGQLEKSHAIVSW
RLRNDGIAEHCSQKLSS*

mRNA from alignment at H-paniculata_contig7816:550..4342-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig7816.15841.1 ID=mRNA_H-paniculata_contig7816.15841.1|Name=mRNA_H-paniculata_contig7816.15841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3793bp|location=Sequence derived from alignment at H-paniculata_contig7816:550..4342- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATTCAAAGGTCAGAGGCGTCGAATGAGGATGCCTGTAGGCGAGGCAA
TGGATACTGTAGAAAAGAAGATAGAATCTTCCTGTGAGGTACGCCCGTCC
CAAGTTGGAGCCGGCCTGGGAACGTTTGCATCTCGGGACCTGACGGCGGG
AGAGCATATCTTTGCGGAGTTTGCTTTCCTCATCGCCAACCCCCACACTC
GGTCACGGCCGCCAGCGAAGCTGTGCGCTGACTTATCAGCCATTTGCATC
CAGCAGGGTTCATTGCCTCCCTGTATCAGGCTCGCTACAAATGACACTGG
AGGTGTATTAAGCGGCAGTCTTGATTCATACTGCTTTGCTCAGGCATATG
CTAGGGCTTCCATGGAGGAACGGAGAGAGGTCTTGCTTCTGAGCGCCCCT
GGCGGAGACGACACACATGCTATCGTTCGCGTGGTTCGTGCCGAAGTCGT
TGTCCTGCGCAACATGGATGCTGAGATCCGTGCAATCTCGCCGAATGAAT
TAGAACGTGCAATCCTCAGGTGTGGTGGACTTGTGTGTGAAATACTGGGC
CGACGGTGATAAGCACAAGACGGTACGTGAAATCAGCGGCCGTATCGGCA
GAACTTCAGCTGTGTTTTCAGACCCATTTCCAGCAGCATTTTTTGTTTAT
CATACAACTTTGGTCCAAAATTCAAATTTGGCGGAAATTTGCGTGTAGCG
GTCACTCTTAGGTGAGGGAAAATTGAGATTTCAGATTTGCAGGCACGGAT
TCATCAATGCGAATTCGGCAATTTTCAGCGACATCTGAAATTTGTACACT
TCACGTTTCAGGCACCGTTTATAGGAGCCACTTCGTAGAGCGTAAAATCG
ATGCAGGCAAATCGTGGTGCTTTGCAAGAAAGGGCGGAACTAACTATTGG
TGCAGCGCTCATGACAGCCGCAAAATAACCCACGCTACGCCTGGACCATG
TGTTGGGCGTGTCGCCTTCGATGACCGGTGTCTACTTCCGCGTGAAATTC
CCCCCCCCCCAAAAGGTGACTACTTTTAATACAAAGCAGGTTTCAGCCAG
ATTTGAATTTTGTAAGTTTCACCTTGCTGGTATTTTTTTTTAGGGCAATA
ACTATAATAGTGGCCACGTAGTTTTGGGTGCAAACAACAGATGTGGGATT
CATTTAGGCAAGAGTTAGGTTGCAAGTGAAAAGATGCCTGTATATCCAAC
TGGTCGAACAGAAAGATTGACAGTTTTTCCTGTTTTAGAGATTCACGACT
TGTTGTGTCAACACCAGACGCGAGCAGGACTAACTGCGCTGATTTCTAAC
GCTAATGCTAACGCTAGCCCCCGTATCCTGGAGATGGTGTGCGTTGGTAG
ACCTCGAATCGGCGCTGTTGGCACCGATTCGAGCAAAAACTGTGTGCTGT
ATGCGGTAGGACGCATCAAGATGGTGATGGCATGATGAGTCTTGTATTAG
TTGATGTGCTGAGTTTGTATGGCCATTTGTGTGGCCAAAACGTTATTTCC
ACCACTTGGACAACGCTACCCAATGAAGACTACAGACATTCAAGCGAAGG
TGCCCTGCAAACTCCGTTCGGATTTCGAATTCGCACATTTCACGCAGCAC
ATCACACCGTGATTCGAGCGCGACGTTCTCGACGCATTTTATGCTTGAGT
GCGACAGCCGTAGATTATCTTGCGATTATCATAGAAGAATCAGTCAAGTA
ACAGTCCCGCGCTTCGAAAGCGTTCTCTGCGTGCTTCTCGCGGAGGCTGC
TATTATAATACAACACAACGCCCTCGGGAGAGACCGGCTCTTGAGAAAAC
ACCTCTTGCTTTGAGTTTTGGGAACTGAGTGCGGAGCACGCACTCAGTTA
TTCTGCCCTGTACATGAACTTGTCATCCGGCAATGGAATGAAAATGAAAA
TGTCTTTTGTGTAGCAAATCGGGATTCAAGAGCCCCAGGAACGTCAGAAT
CGCCCTTTCCATATCGATACCGTCTGAAATTGGCAGAACTTCACTGCTGG
TAGGAATCTCGCCCTTAATGAGTGAGTGCAACGCGCGCAACACACTATGG
CCACCAGTGCATTAACGTTAGGGTGCCTTGCAACTGTCGTGCTATCATAG
AAGTGCTGCGACAATAATCACCCCCGTCCATGCTTCCAAAGCCTTGTTAT
TGTGTGCGTGTTTTGGCGATTTGACCATACTTTTTACGTGCATCTGTATT
TTCCATCTGAAATTTGCTGACCCTTAGACAGACAGGTTGACCAATTTGGT
CATGCGAAACCTGTATTTTGGCCGGTTTCCAGAGATACGTTTTTCTGGTC
AACCAAACTACTAAATGCCTCCGCCGTATTCATCCCCTCCGAACTTCCAA
GGCACGAAAACAGTATCGCTCTCTAGCAACTCTATCGATGTCCCAATATT
CACCATAATTCAAAGAGACATATACTCCAGGGTATGCCAGCCCACTAGCC
CATGACCATCAACCAACAGCAGCTGCCGAGTAACGTATAAAAGAAAATCC
ACTTCTCCAACCACGGCAGATACTGGGCGAACACGTTCGGACGAGAAGGA
TCTCTCCACGCACGGGGGTCGCGCTTCAACCACAGCTGTGTACCCAACTG
CACTCACGCTGAAACAAGAAGCACCGGTGATCCAGCACCAACATCAACAG
CAACAGCAACAAAGAAGATATTTCTCACGTTACGCCCTGTTGCCCGCGGA
GAGGAGCTTACCCTGTCCTATCTACCTTCCAAGTTGGAAGTGATGGGCAC
TGTTGTGCGCCGGCGGCATCTCTGGCTCTCTCGGGGGTTCATGTGCAGCT
GCACCCTTTGCTCTGAGGCACAAGATCATCTGCGGCGGGTGAAATGTCCG
GACTGCACGTCTCGAACACGATTGTCCCGATTTCATCCATCTCAATCAAA
TGCTGCTACATGTGGCGGTCGGCCGAGCGGCGATAAGGGTACAATTTCAA
CACCATGGTCACGGATGTTACCGTTAGGATCATTGGAGGAAATCGTTCCT
GAGACGAGCACTGAAGAGGCTTTTGCGGACTGGTGGAATGAGAGTGGAAT
ATGGGTGTGCCGGTGGTGTGGTTGGTGCAGTGATCCGGCAGGCGCTTTGC
ATCGTCGAGAAGGCGCCTTGAGTGCGGAAATATTCTCTCTTGTCATGGCA
CAAACAATTGCCGAAGAAGATGGACAGAGTGGGTTGTCGTCGACGGAACG
TCGAGATCGTCTCGAGGAAGACAAGAATGGTGGCGGCGTGTGGGCACTGA
GGGAGGCAGATAGCAGGAGGCTGGCCTCTACCATCGAGGATTTGCTTCGA
GTGTCCGTTGGCACGCTAGGCCGAAGGCATTGGGTTACATTTTGCTGCTT
GTTGTTGCGTTTGGAGCTAGACATGGTCCAGCTTGAATCAGGCACGTCCG
CCTTACCAACAAGTACTACGTTGGCAGCCTTGGATCGTGCGATGATTGAC
CTAAACGGGATATGGGAATGGTTGGAGCTTACGCCTGTGACGCTACCTCC
AGAGTCCTATCTCTTTGACGTTGTGTGTGCAATGGCTGTAGAGGGTTTGG
GTCGTGGGCGAGGCTGTTGGGGAGCCGCCCGTGAGCTGTTAACACGAGTT
GACGCATGGGCATCAGCATTCGCAGATAGCCACCAGAGGGGGCAGTTGGA
AAAATCCCACGCGATTGTCAGTTGGCGTTTAAGAAACGATGGTATTGCGG
AGCATTGCTCGCAGAAACTCTCATCCTAACCCGCCCCCCATTTGGAACGC
TTACTGCTATAGCAGTGGAGGACAGAAATAAAGTAAATCTCGC

Coding sequence (CDS) from alignment at H-paniculata_contig7816:550..4342-

>mRNA_H-paniculata_contig7816.15841.1 ID=mRNA_H-paniculata_contig7816.15841.1|Name=mRNA_H-paniculata_contig7816.15841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3408bp|location=Sequence derived from alignment at H-paniculata_contig7816:550..4342- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGATGCCTGTAGGCGAGGCAATGGATACTGTAGAAAAGAAGATAGA
ATCTTCCTGTGAGGTACGCCCGTCCCAAGTTGGAGCCGGCCTGGGAACGT
TTGCATCTCGGGACCTGACGGCGGGAGAGCATATCTTTGCGGAGTTTGCT
TTCCTCATCGCCAACCCCCACACTCGGTCACGGCCGCCAGCGAAGCTGTG
CGCTGACTTATCAGCCATTTGCATCCAGCAGGGTTCATTGCCTCCCTGTA
TCAGGCTCGCTACAAATGACACTGGAGGTGTATTAAGCGGCAGTCTTGAT
TCATACTGCTTTGCTCAGGCATATGCTAGGGCTTCCATGGAGGAACGGAG
AGAGGTCTTGCTTCTGAGCGCCCCTGGCGGAGACGACACACATGCTATCG
TTCGCGTGGTTCGTGCCGAAGTCGTTGTCCTGCGCAACATGGATGCTGAG
ATCCGTGCAATCTCGCCGAATGAATTAGAACGTGCAATCCTCAGATGAGG
ATGCCTGTAGGCGAGGCAATGGATACTGTAGAAAAGAAGATAGAATCTTC
CTGTGAGGTACGCCCGTCCCAAGTTGGAGCCGGCCTGGGAACGTTTGCAT
CTCGGGACCTGACGGCGGGAGAGCATATCTTTGCGGAGTTTGCTTTCCTC
ATCGCCAACCCCCACACTCGGTCACGGCCGCCAGCGAAGCTGTGCGCTGA
CTTATCAGCCATTTGCATCCAGCAGGGTTCATTGCCTCCCTGTATCAGGC
TCGCTACAAATGACACTGGAGGTGTATTAAGCGGCAGTCTTGATTCATAC
TGCTTTGCTCAGGCATATGCTAGGGCTTCCATGGAGGAACGGAGAGAGGT
CTTGCTTCTGAGCGCCCCTGGCGGAGACGACACACATGCTATCGTTCGCG
TGGTTCGTGCCGAAGTCGTTGTCCTGCGCAACATGGATGCTGAGATCCGT
GCAATCTCGCCGAATGAATTAGAACGTGCAATCCTCAGATACTGGGCGAA
CACGTTCGGACGAGAAGGATCTCTCCACGCACGGGGGTCGCGCTTCAACC
ACAGCTGTGTACCCAACTGCACTCACGCTGAAACAAGAAGCACCGGTGAT
CCAGCACCAACATCAACAGCAACAGCAACAAAGAAGATATTTCTCACGTT
ACGCCCTGTTGCCCGCGGAGAGGAGCTTACCCTGTCCTATCTACCTTCCA
AGTTGGAAGTGATGGGCACTGTTGTGCGCCGGCGGCATCTCTGGCTCTCT
CGGGGGTTCATGTGCAGCTGCACCCTTTGCTCTGAGGCACAAGATCATCT
GCGGCGGGTGAAATGTCCGGACTGCACGTCTCGAACACGATTGTCCCGAT
TTCATCCATCTCAATCAAATGCTGCTACATGTGGCGGTCGGCCGAGCGGC
GATAAGGGTACAATTTCAACACCATGGTCACGGATGTTACCGTTAGGATC
ATTGGAGGAAATCGTTCCTGAGACGAGCACTGAAGAGGCTTTTGCGGACT
GGTGGAATGAGAGTGGAATATGGGTGTGCCGGTGGTGTGGTTGGTGCAGT
GATCCGGCAGGCGCTTTGCATCGTCGAGAAGGCGCCTTGAGTGCGGAAAT
ATTCTCTCTTGTCATGGCACAAACAATTGCCGAAGAAGATGGACAGAGTG
GGTTGTCGTCGACGGAACGTCGAGATCGTCTCGAGGAAGACAAGAATGGT
GGCGGCGTGTGGGCACTGAGGGAGGCAGATAGCAGGAGGCTGGCCTCTAC
CATCGAGGATTTGCTTCGAGTGTCCGTTGGCACGCTAGGCCGAAGGCATT
GGGTTACATTTTGCTGCTTGTTGTTGCGTTTGGAGCTAGACATGGTCCAG
CTTGAATCAGGCACGTCCGCCTTACCAACAAGTACTACGTTGGCAGCCTT
GGATCGTGCGATGATTGACCTAAACGGGATATGGGAATGGTTGGAGCTTA
CGCCTGTGACGCTACCTCCAGAGTCCTATCTCTTTGACGTTGTGTGTGCA
ATGGCTGTAGAGGGTTTGGGTCGTGGGCGAGGCTGTTGGGGAGCCGCCCG
TGAGCTGTTAACACGAGTTGACGCATGGGCATCAGCATTCGCAGATAGCC
ACCAGAGGGGGCAGTTGGAAAAATCCCACGCGATTGTCAGTTGGCGTTTA
AGAAACGATGGTATTGCGGAGCATTGCTCGCAGAAACTCTCATCCTAAAT
ACTGGGCGAACACGTTCGGACGAGAAGGATCTCTCCACGCACGGGGGTCG
CGCTTCAACCACAGCTGTGTACCCAACTGCACTCACGCTGAAACAAGAAG
CACCGGTGATCCAGCACCAACATCAACAGCAACAGCAACAAAGAAGATAT
TTCTCACGTTACGCCCTGTTGCCCGCGGAGAGGAGCTTACCCTGTCCTAT
CTACCTTCCAAGTTGGAAGTGATGGGCACTGTTGTGCGCCGGCGGCATCT
CTGGCTCTCTCGGGGGTTCATGTGCAGCTGCACCCTTTGCTCTGAGGCAC
AAGATCATCTGCGGCGGGTGAAATGTCCGGACTGCACGTCTCGAACACGA
TTGTCCCGATTTCATCCATCTCAATCAAATGCTGCTACATGTGGCGGTCG
GCCGAGCGGCGATAAGGGTACAATTTCAACACCATGGTCACGGATGTTAC
CGTTAGGATCATTGGAGGAAATCGTTCCTGAGACGAGCACTGAAGAGGCT
TTTGCGGACTGGTGGAATGAGAGTGGAATATGGGTGTGCCGGTGGTGTGG
TTGGTGCAGTGATCCGGCAGGCGCTTTGCATCGTCGAGAAGGCGCCTTGA
GTGCGGAAATATTCTCTCTTGTCATGGCACAAACAATTGCCGAAGAAGAT
GGACAGAGTGGGTTGTCGTCGACGGAACGTCGAGATCGTCTCGAGGAAGA
CAAGAATGGTGGCGGCGTGTGGGCACTGAGGGAGGCAGATAGCAGGAGGC
TGGCCTCTACCATCGAGGATTTGCTTCGAGTGTCCGTTGGCACGCTAGGC
CGAAGGCATTGGGTTACATTTTGCTGCTTGTTGTTGCGTTTGGAGCTAGA
CATGGTCCAGCTTGAATCAGGCACGTCCGCCTTACCAACAAGTACTACGT
TGGCAGCCTTGGATCGTGCGATGATTGACCTAAACGGGATATGGGAATGG
TTGGAGCTTACGCCTGTGACGCTACCTCCAGAGTCCTATCTCTTTGACGT
TGTGTGTGCAATGGCTGTAGAGGGTTTGGGTCGTGGGCGAGGCTGTTGGG
GAGCCGCCCGTGAGCTGTTAACACGAGTTGACGCATGGGCATCAGCATTC
GCAGATAGCCACCAGAGGGGGCAGTTGGAAAAATCCCACGCGATTGTCAG
TTGGCGTTTAAGAAACGATGGTATTGCGGAGCATTGCTCGCAGAAACTCT
CATCCTAA