mRNA_H-paniculata_contig77592.15794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77592.15794.1
Unique NamemRNA_H-paniculata_contig77592.15794.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 64.7 bits (156), Expect = 2.150e-10
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVD-KSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFE 225
            AC KGK  +QS +  R  R   PLE+VH DIAGP D  SLGG R+ + F++D+SR   +Y  ++KSEAL  L++F+
Sbjct:  366 ACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFK 441          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA)

HSP 1 Score: 64.3 bits (155), Expect = 2.920e-10
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVD-KSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFE 225
            AC KGK  +Q  +  + +R   PLE+VH DI+GP D +SLGG R+ + F++DYSR   VY  + KSEAL   K+F+
Sbjct:  521 ACVKGKQHRQKFEVGKSRRARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFK 596          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 64.3 bits (155), Expect = 2.920e-10
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVD-KSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFE 225
            AC KGK  +QS +  + +R  +PLE+VH+D+AGP D  SLGG R+ + F++D+SR   VY  ++KSE L   K+F+
Sbjct:  820 ACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFK 895          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 63.9 bits (154), Expect = 3.980e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVD-KSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFE 225
            AC KGK  +QS K  R  R    LE+VH DIAGP D  SLGG R+ + F++D+SR   +Y  ++KSEAL  LK+F+
Sbjct:  367 ACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFK 442          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 63.2 bits (152), Expect = 7.310e-10
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 CEKGKASKQSVKRYREKRTTEPLELVHADIAGPV-DKSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFE 225
            C  GK SK+S    +  R TEPLELVHAD+ GP+  ++LGG ++ ++FV+DYSRM  VY  + KSEA     KF+
Sbjct:  327 CMYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFK 401          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A2Z7AAL1_9LAMI (CCHC-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AAL1_9LAMI)

HSP 1 Score: 62.0 bits (149), Expect = 1.790e-9
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 CEKGKASKQSVKRYREKRTTEPLELVHADIAGPV-DKSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFE 225
            C  GK SK+S    +  R TEPLELVHAD+ GP+  ++LGG ++ ++FV+DYS+M  VY  + KSEA     KF+
Sbjct:  327 CIYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSKMSWVYFLKFKSEAFGQFVKFK 401          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 61.2 bits (147), Expect = 1.930e-9
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVD-KSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFER 228
            AC  GK ++Q  K   E R+   L+L+H+D+ GP+  +S+GG ++ + F++D+SR  KVY  + KSE L   K+FER
Sbjct:   90 ACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFER 166          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 61.2 bits (147), Expect = 3.470e-9
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVD-KSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKFER 228
            AC  GK ++Q  K   E R+   L+L+H+D+ GP+  +S+GG ++ + F++D+SR  KVY  + KSE L   K+FER
Sbjct:  461 ACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFER 537          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A251SFL5_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SFL5_HELAN)

HSP 1 Score: 61.2 bits (147), Expect = 3.540e-9
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 CEKGKASKQSVKRYREKRTTEPLELVHADIAGPV-DKSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKF 222
            C  GK +++   +    + TEPL+LVH+DI GP+  +S+GGCR+ I F++DY+R   VY  + KSEAL+  K F
Sbjct:  484 CISGKHARKPFHKKMVWQATEPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKTWVYFLKFKSEALYHFKNF 557          
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Match: A0A251SFG3_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SFG3_HELAN)

HSP 1 Score: 61.2 bits (147), Expect = 3.560e-9
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 CEKGKASKQSVKRYREKRTTEPLELVHADIAGPV-DKSLGGCRFAIIFVNDYSRMRKVYTSRKKSEALWALKKF 222
            C  GK +++   +    + TEPL+LVH+DI GP+  +S+GGCR+ I F++DY+R   VY  + KSEAL+  K F
Sbjct:  729 CISGKHARKPFHKKMVWQATEPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKTWVYFLKFKSEALYHFKNF 802          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77592.15794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3BY51_HIBSY2.150e-1048.68Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A068B703_GOSBA2.920e-1047.37Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A... [more]
A0A2G2VUS6_CAPBA2.920e-1046.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2WSU7_HIBSY3.980e-1050.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A2Z7BCE9_9LAMI7.310e-1049.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7AAL1_9LAMI1.790e-948.00CCHC-type domain-containing protein n=1 Tax=Dorcoc... [more]
A0A0S7KIZ2_9TELE1.930e-941.56POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A0S7KIW8_9TELE3.470e-941.56POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A251SFL5_HELAN3.540e-944.59Putative ribonuclease H-like domain-containing pro... [more]
A0A251SFG3_HELAN3.560e-944.59Putative ribonuclease H-like domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77592contigH-paniculata_contig77592:149..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score61.6
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog7425.NV18853-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.5648658-CDS-H-paniculata_contig77592:148..3761622930964.5648658-CDS-H-paniculata_contig77592:148..376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77592 149..376 +
1691481530.0616114-CDS-H-paniculata_contig77592:148..3761691481530.0616114-CDS-H-paniculata_contig77592:148..376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77592 149..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77592.15794.1prot_H-paniculata_contig77592.15794.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77592 149..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77592.15794.1

>prot_H-paniculata_contig77592.15794.1 ID=prot_H-paniculata_contig77592.15794.1|Name=mRNA_H-paniculata_contig77592.15794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
ACEKGKASKQSVKRYREKRTTEPLELVHADIAGPVDKSLGGCRFAIIFVN
DYSRMRKVYTSRKKSEALWALKKFER
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mRNA from alignment at H-paniculata_contig77592:149..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77592.15794.1 ID=mRNA_H-paniculata_contig77592.15794.1|Name=mRNA_H-paniculata_contig77592.15794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig77592:149..376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGTGAGAAGGGGAAAGCGTCGAAGCAGTCTGTAAAAAGGTATCGAGA AAAGCGGACGACCGAGCCGTTGGAGCTGGTGCACGCCGACATAGCCGGAC CGGTGGACAAGTCCTTGGGAGGATGTCGATTCGCCATCATCTTTGTCAAC GACTACAGCAGAATGCGTAAAGTTTATACCTCGCGAAAAAAGTCGGAGGC GCTATGGGCCCTGAAGAAATTCGAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig77592:149..376+

>mRNA_H-paniculata_contig77592.15794.1 ID=mRNA_H-paniculata_contig77592.15794.1|Name=mRNA_H-paniculata_contig77592.15794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig77592:149..376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGTGAGAAGGGGAAAGCGTCGAAGCAGTCTGTAAAAAGGTATCGAGA
AAAGCGGACGACCGAGCCGTTGGAGCTGGTGCACGCCGACATAGCCGGAC
CGGTGGACAAGTCCTTGGGAGGATGTCGATTCGCCATCATCTTTGTCAAC
GACTACAGCAGAATGCGTAAAGTTTATACCTCGCGAAAAAAGTCGGAGGC
GCTATGGGCCCTGAAGAAATTCGAGAGGGCGTGTGAGAAGGGGAAAGCGT
CGAAGCAGTCTGTAAAAAGGTATCGAGAAAAGCGGACGACCGAGCCGTTG
GAGCTGGTGCACGCCGACATAGCCGGACCGGTGGACAAGTCCTTGGGAGG
ATGTCGATTCGCCATCATCTTTGTCAACGACTACAGCAGAATGCGTAAAG
TTTATACCTCGCGAAAAAAGTCGGAGGCGCTATGGGCCCTGAAGAAATTC
GAGAGG
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