mRNA_H-paniculata_contig7744.15765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7744.15765.1
Unique NamemRNA_H-paniculata_contig7744.15765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A6H5JXI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.780e-32
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    7 QDKDVLEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            +DK +LE IA SV +AAVLDQKQRW   +QVE LR+V+AESLHQVKNPMTALRTFGKLLLRRLP+DD+LNRELAKDIILQ
Sbjct:  104 RDKRLLETIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAESLHQVKNPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQ 183
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: D7G9E8_ECTSI (Two component sensor histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.710e-31
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 GWQDKDVLEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            G +DK +LE IA SV +AAVLDQKQRW   +QVE LR+V+AESLHQVKNPMTALRTFGKLLLRRLP+DD+LNRELAKDIILQ
Sbjct:  148 GERDKRLLETIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAESLHQVKNPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQ 229
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A835ZFA0_9STRA (Two component sensor histidine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.610e-29
Identity = 59/79 (74.68%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   10 DKDVLEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            DK++LEK+ASS+AM A LDQ+QRW  A QVE+LRR+L+E+LHQ KNP+TALRTFGKLLLRRLP  D LNRELA+DIILQ
Sbjct:  263 DKELLEKVASSLAMGAALDQRQRWAAAAQVEELRRMLSETLHQAKNPLTALRTFGKLLLRRLPAADGLNRELAEDIILQ 341
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A7S4DJM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJM8_HETAK)

HSP 1 Score: 108 bits (269), Expect = 5.870e-26
Identity = 52/83 (62.65%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    4 WQDKD--VLEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            W +KD  +L+ +A+++A+AAVLDQK+RW   +Q++ LRR LAE+LHQVKNP+TA+RTFGKLLLRRLP +DSLNR+LA+D++ Q
Sbjct:  265 WSEKDCRMLQNVANTLALAAVLDQKERWEHQMQLDGLRRALAETLHQVKNPLTAVRTFGKLLLRRLPAEDSLNRQLARDLLTQ 347
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A7S0NF57_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF57_9CRYP)

HSP 1 Score: 100 bits (248), Expect = 1.310e-22
Identity = 49/83 (59.04%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 WQDKDV--LEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            WQ+ D+  LE IA S+A+A +LDQK +W +AVQ E +R++L+E+LHQVKN ++A+R FGKLLLRRLP  D +NRELA+DI++Q
Sbjct:  243 WQEADLKQLEAIARSLAVAVILDQKHQWQEAVQAESMRKMLSETLHQVKNSLSAVRMFGKLLLRRLPGSDKMNRELARDILIQ 325
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A7S0YLT3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YLT3_9CRYP)

HSP 1 Score: 88.6 bits (218), Expect = 2.320e-19
Identity = 46/81 (56.79%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:   10 DKDVLEKIASSVAMAAVLDQKQRWT--KAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            +K  ++ IAS++A+A VLDQ+ +++  +A+Q E+LR +L++SLHQVKN ++A+R FGKLLLRRLP DD +NRELAKDI++Q
Sbjct:  159 EKTQIKNIASTLAIAIVLDQRNQFSYNEALQAEKLRSMLSDSLHQVKNSLSAVRMFGKLLLRRLPGDDMMNRELAKDILIQ 239
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A7S0UAD8_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UAD8_HEMAN)

HSP 1 Score: 90.1 bits (222), Expect = 4.290e-19
Identity = 47/82 (57.32%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    7 QDKDVLEKIASSVAMAAVLDQKQRWT--KAVQVEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDIILQ 246
            ++K  ++ IASS+A+A VLDQ+ +++  +A+Q E+LR +L++SLHQVKN ++A+R FGKLLLRRLP DD +NRELAKDI++Q
Sbjct:  193 EEKAHVKNIASSLALAIVLDQRNQFSYNEALQAEKLRSMLSDSLHQVKNSLSAVRMFGKLLLRRLPSDDMMNRELAKDILIQ 274
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: UPI0019E69CB7 (GAF domain-containing sensor histidine kinase n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019E69CB7)

HSP 1 Score: 69.7 bits (169), Expect = 6.290e-12
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    4 WQDKDV--LEKIASSVAMAAVLDQKQRWTKAVQ------VEQLRRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDII 240
            W +++V  +E+IA ++A+A +LDQ+ +W            +Q R +L   LHQ++NP+TALRTFGKLLLRRL   D+ NRE+A  I+
Sbjct:  147 WNEREVSQIERIAHTIAIARILDQRAQWLNTTLHKQKQFYQQQRDILDNLLHQLRNPLTALRTFGKLLLRRLLPSDN-NREIASSIV 232
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: A0A2T1DFR8_9CYAN (Sensor histidine kinase n=1 Tax=Phormidesmis priestleyi ULC007 TaxID=1920490 RepID=A0A2T1DFR8_9CYAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.170e-11
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    4 WQDKDVLEKIASSVAMAAVLDQKQRWTKAVQVEQL------RRVLAESLHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDII 240
            W+ +  +E++A+++A+A V+DQ+ +W    + EQ         VL   LHQ KNP+TALRTFGKLLLRRL  +DS NRE+A  I+
Sbjct:  140 WE-RSQIERVAATIALACVMDQRAQWLDQTRHEQRLLQNEQHDVLDNLLHQFKNPLTALRTFGKLLLRRLRPEDS-NREVATSIV 222
[Close]
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Match: UPI0019506418 (HAMP domain-containing histidine kinase n=1 Tax=Spirulina major TaxID=270636 RepID=UPI0019506418)

HSP 1 Score: 68.2 bits (165), Expect = 2.180e-11
Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    4 WQDKDV--LEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAES------LHQVKNPMTALRTFGKLLLRRLPRDDSLNRELAKDII 240
            W+ +++  +E I  ++A+A  LD++Q WTK   ++Q R ++A+       LHQ++NPMTALRTFGKLLL+RL  +D  N E+A+++I
Sbjct:  150 WEKRELTQVENILQTLAIARYLDRQQGWTKEQLIQQQRSIVAQRDRFDDLLHQLRNPMTALRTFGKLLLKRLLPEDK-NSEIAENLI 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7744.15765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXI6_9PHAE4.780e-3280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9E8_ECTSI1.710e-3179.27Two component sensor histidine kinase n=1 Tax=Ecto... [more]
A0A835ZFA0_9STRA5.610e-2974.68Two component sensor histidine kinase n=1 Tax=Trib... [more]
A0A7S4DJM8_HETAK5.870e-2662.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0NF57_9CRYP1.310e-2259.04Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0YLT3_9CRYP2.320e-1956.79Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0UAD8_HEMAN4.290e-1957.32Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
UPI0019E69CB76.290e-1244.83GAF domain-containing sensor histidine kinase n=1 ... [more]
A0A2T1DFR8_9CYAN1.170e-1147.06Sensor histidine kinase n=1 Tax=Phormidesmis pries... [more]
UPI00195064182.180e-1143.68HAMP domain-containing histidine kinase n=1 Tax=Sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7744contigH-paniculata_contig7744:6853..11004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue4.2e-27
Seed eggNOG ortholog2880.D7G9E8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase-like ATPases
EggNOG OGs2CYMS@1,2S572@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.2468565-CDS-H-paniculata_contig7744:6852..69901622930961.2468565-CDS-H-paniculata_contig7744:6852..6990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7744 6853..6990 +
1691481528.8247159-CDS-H-paniculata_contig7744:6852..69901691481528.8247159-CDS-H-paniculata_contig7744:6852..6990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7744 6853..6990 +
1622930961.2636611-CDS-H-paniculata_contig7744:10869..110041622930961.2636611-CDS-H-paniculata_contig7744:10869..11004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7744 10870..11004 +
1691481528.8457959-CDS-H-paniculata_contig7744:10869..110041691481528.8457959-CDS-H-paniculata_contig7744:10869..11004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7744 10870..11004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7744.15765.1prot_H-paniculata_contig7744.15765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7744 6853..11004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7744.15765.1

>prot_H-paniculata_contig7744.15765.1 ID=prot_H-paniculata_contig7744.15765.1|Name=mRNA_H-paniculata_contig7744.15765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
GWQDKDVLEKIASSVAMAAVLDQKQRWTKAVQVEQLRRVLAESLHQVKNP
MTALRTFGKLLLRRLPRDDSLNRELAKDIILQVSWVVVVVV
back to top

mRNA from alignment at H-paniculata_contig7744:6853..11004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7744.15765.1 ID=mRNA_H-paniculata_contig7744.15765.1|Name=mRNA_H-paniculata_contig7744.15765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4152bp|location=Sequence derived from alignment at H-paniculata_contig7744:6853..11004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGGCAGGACAAGGACGTGCTGGAGAAGATAGCGAGCTCTGTCGCCAT
GGCTGCCGTGTTAGATCAAAAGCAGAGGTGGACAAAAGCAGTTCAAGTGG
AGCAGCTCAGGAGAGTACTGGCAGAGTCCCTTCATCAGGTGGGCCTTTTT
TTTCTTTCTTTTTTTTCAACCCCCGAAAGGCTAAGGGAAAAACCTTTATC
CGATGCTTCCATACTTGAGTATTTCTACCGAAATATTTCTGCATTTTTTT
TTAACACAACAGAGTTATTTACTCCTCTTCCGGGTTAGGCGCCACCCCGG
TTCGGCCGAACCAAGTAGGCAGTCAGGTGGGTCTTTCTTAGGGCTAGAGG
CAGATAGACTTAGCCAAACGTTTTGGTGTTCAGCAGCCATTACGGTGAGG
CCATTTGATATCCGACCGAGGTACAAACGTTCTTCAAACGCGATTGATGT
TCTAGAGGACTGAGACCTTACCTTACTTGGTCGAAAGAGCCTGTCGTACA
CAGATCTCCGTATCCCACGGACCTACGCCCGAACGGGTAGGGTACACACT
GATATCGACTTAATTTCAACGTTTTTTACGAATCCCAGCCAGTCTTGGTC
ATTTTCGGCACACCTTACCGTCTGTACAAGAACCGTCTGTCTTCCTTGGG
TTGTTGTCCAATCCTGTCCGAGTTACCCTATGTTGGCTTGAGAATGCCTC
CACATCAAGATGGCCCCAGGGGGGTATCAAACGAGCACTGAAAACTCGAA
CGCCCGGGGGCAAAGGCCTCTGGTTATCAAATGAGGACCAAAGAAAGAAT
GCCCCGTGTGCGTCAAGAATGCCCTGGGGGGGTATCAAGTGAGACGAAAC
GACACTAACGCTAACGCCCCAGGGAGATCGATATTTTCACAAAGATTCGA
AAGAACAGTGTTCGGCCGAGTCCTCGGCAATATCTTTGAGCACCAAGCCA
AGAGGCAGAGAGCCACAAAAGAGTGGGGAAGCTTGCGTTGACCCTCTGCT
ACACCCCCCGTTGTTGATAATCCCGTGGTGGCAATCCCCAAACCAGCTCG
CAGAAGAAACGGCAAGCAATGTCCGCTACGTACCCCGAACCCGCTACTGA
CTGTAGATTGTGAGGCAGGAAATTATTTTGTTCAGCGCCCCGGAGGGAGA
CGTGTTTTTGCTCTCTATCGCCTCCTGCTCGCAACATTACTCTGAGGCGT
TTTTTTTTGTTTGTTTTTTTGTCTGGCCCAGGGGCGTTCTCAAGGTAACA
TACGGTATGTCATACTCCTAGGGAGGATGAGGTGAACTCACTCCGTCGGC
CCATTATCTGGAGTCCATCCGAGTCAGTCCGACCCTGCTTCCAAAGACCG
GTCATACGGAAAGCATCCCAGGTTTCGGGAAACCAAAGAAAAGAAAGCCT
CCTGGTTGTTTCCTCGCACCAACGGGTAGGGGAAGGCGGACTCTGTTCTG
CGTAGGTCTAGAATCAGAACACGGTAAAAAGTGTTGTGGACTTAAGCTTC
TTCCCTCTCAATCTATGTGAGAAACGAGTAAAATTGCATTTTCAGGGGAT
AAAAGAAAAAAAGGAGAAGGTGGACCTGTTGTCCGCCCGGGTAGTAGTAC
CCTTCTACTGTTTTAAAAAAAGAGGAAATATAAAATTTGAATGATTAAAC
ATTTTTTTTTTTTCCAAAATTGGTAAGTTAAAAAAAAAATTGAATGCAAA
GTTACTCCCCCCCCCCCAGGAAAAATACGAATACTTGCAAATGGTTTTCA
CAAAATCCTGAAATTATTCGTCTGAGTTTCAGAATGAGCGGACACATATA
ATCAAGTACCCACCCGTCCATTCGATCTACGAGTATGATTAGCTGTCTTG
GATGGTACGGGACACATGAAATACGCGAAAGGTCATTCTGAAACTCAAAG
CGAATATGTTCAGTTTTTCGTTAAAAATCATTTACAAGTATTCGGAATTG
TCCGGGGGGTGAAAGGTTCACAGCAAGGTCTTGTTTCTTGAATAAAGTAC
TGTACTAACAGTTGTTTTTTATGTTACAGAAAAAAAAAAAAAAAATGTTA
CAAAGAAATTTATATGATTTTTCGTGAGATTTTTTGTTTTCAACAAATTA
TTTCTGTATCAGTAAATACAGTATGTATCAACTAGTTTAGTACTGTTGTC
CATGCCGGGTCTTGCCGTGTGTTGTGTCTGGCCCAACGGTATTTCTGGCC
CAACGGTACAGCCGAGAGTCGTACGTACCAACAGCGAATTGGAATGGTTG
AGTGCTTGCAAAATTAAGCATATGTTGGTAAAATTCGATTTGGGGCTGTA
TGGCTCATGGTGACCTCCAGGTCGCGAACCCTAGTCCAGCCGCACCAACT
TCGCGGTACGAAACGAATTCTCTGTCAAACTTGATAGGTTTGTACAGGAA
TTTTACGAAATCCTAGGACCGAAGCTCACTCGAGCAGGGTGGCGCGTGTA
CTGCGCCAATTTGAGGGAATCACCACAAGGAGTTTCAGTGGGTGTGAGTC
CCACATTGCCCTGAGCTCGGGGTGCCTACCTGACATGACCGCCTCGCGGC
GGTCTAGTCGGGCCTTCGGGTAGCCGACACACGAACCCGGTCTCGGCGGT
AAGTTTTTTTTTTTAACCCCCGAAAGGCTAAGGCAAAAATCTTTATCCGA
TGCTTCCATACCGACGTATTTCTACCGAAGTATTTCTACATTTCCTTTAA
CAGAGCAGAGTTATTTATTCCTCTGCGGGATAGGCGCCACCTCGGTTCGG
CCGAACCAAGTAGGCACTGTGGGGGTTGTACCCACTAAAAGACCTCTGAC
TAGACTTCCAGTCATGATCAGTTCACGAGCTACCCTACCCGTTCGGGCGA
AGGTTTGTTCGGGAGGGTATGTGTTGGGCAAAGGTTACCTCCTCTCCTTC
GAGGATGAAAAAAGAAAGCGTCTTACAAGGTCTGATGTGGGCTTAGATGA
AGAAATCGTTTTGTAGCGAGGCGTTAGTGTAGATGGACTTGAGTCCGGGA
TGTACAGTAGCTCACTATGATGAGACGTGCTAAATCGTAATTTGCGGGCA
TGGACTTATTTTCGCAAGCACCTCTATGTTGGAGGTCAAGTAGCAATCTT
GGTTTGTCAGACGTTGAGTGGATGATGTTTGTGTTGCCTATAGTAATGCC
TCGAACGATGGTTCGTGAAGGACAGCGTTGGCGAGATGGTGGTGGTCGTT
TCCGAACAAGTGGATTGTAGAGCATGACTTTATACGAAGGTAGGACGGTG
ATGACTTGAGGGATTGCCTATACTGAAGACAAGTTGTTTCCTGTTGTCAC
CTTCGACGAAGGTCAAATGGAGATTGATCGTCGCGAATGTTGGGAGTATT
GGTAGCACGACAGTAATTTTTGGTATTTGTAAAAAAAAATCGAGTCGACT
GATACCTGAAGGTCCTTGACGCCTTGGTGAAGTATTCCACAGCTCGGACG
AAGATCCTTGATCCGTAGATGATCAAGGACGTCGCGGATTTTGGAACTGT
GTCAGAGCGAGGATACCTGGTGCCTTCCGAAACCTACGAATCGATAGCAT
GGATATCCTGCACACCTTCGAGGAGTGTTCGACTTTTGAGTACTACAGTA
GCGCACCTCCACAGATATTTCTACTTTTGAGCATGAAGGGATGATGTTTC
CGTTGCGTGTTAATTACTTGCAAATCAAAGCTTCGTCCGAGCTGTGAAGT
ACTCGATTCCGGAGCATGACCATGCCTTCGCATATTTTCTACTTCGTAGC
ATGAACCGCTTGTATCGCTATAGATGTGTTTTTACTTGGAAATAATTATG
TGTCTCCGGGCTGTGAAGTGTATACTCTCTCTGTTCTTTTGATTCCCTGC
CTTTAGGCGCTGCTAACGTACAAGGGTGACTACGTCGTCGCCACGAGCGT
AGCCATGGCCTCCCTGCTGCCTTACTGTAATGGAATGTAGTGGAGTGTGT
GCTTGTGTCGATGATGAGATGATAATATGTTTATATGTTAATATGTTGGT
GGTGCGGACGCGGACAGGTGAAGAACCCGATGACTGCGTTACGAACGTTC
GGCAAGCTATTACTAAGGCGACTTCCGAGGGATGACTCGCTTAATCGGGA
ACTCGCGAAGGATATCATACTACAGGTAAGTTGGGTGGTGGTGGTGGTGG
TG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7744:6853..11004+

>mRNA_H-paniculata_contig7744.15765.1 ID=mRNA_H-paniculata_contig7744.15765.1|Name=mRNA_H-paniculata_contig7744.15765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig7744:6853..11004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGGCAGGACAAGGACGTGCTGGAGAAGATAGCGAGCTCTGTCGCCAT
GGCTGCCGTGTTAGATCAAAAGCAGAGGTGGACAAAAGCAGTTCAAGTGG
AGCAGCTCAGGAGAGTACTGGCAGAGTCCCTTCATCAGGGCTGGCAGGAC
AAGGACGTGCTGGAGAAGATAGCGAGCTCTGTCGCCATGGCTGCCGTGTT
AGATCAAAAGCAGAGGTGGACAAAAGCAGTTCAAGTGGAGCAGCTCAGGA
GAGTACTGGCAGAGTCCCTTCATCAGGTGAAGAACCCGATGACTGCGTTA
CGAACGTTCGGCAAGCTATTACTAAGGCGACTTCCGAGGGATGACTCGCT
TAATCGGGAACTCGCGAAGGATATCATACTACAGGTAAGTTGGGTGGTGG
TGGTGGTGGTGGTGAAGAACCCGATGACTGCGTTACGAACGTTCGGCAAG
CTATTACTAAGGCGACTTCCGAGGGATGACTCGCTTAATCGGGAACTCGC
GAAGGATATCATACTACAGGTAAGTTGGGTGGTGGTGGTGGTGGTG
back to top