mRNA_H-paniculata_contig7729.15753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7729.15753.1
Unique NamemRNA_H-paniculata_contig7729.15753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7729.15753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7729contigH-paniculata_contig7729:2..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size685
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7729.15753.1prot_H-paniculata_contig7729.15753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7729 308..667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.6306512-UTR-H-paniculata_contig7729:1..3071622930959.6306512-UTR-H-paniculata_contig7729:1..307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7729 2..307 +
1691481528.1725512-UTR-H-paniculata_contig7729:1..3071691481528.1725512-UTR-H-paniculata_contig7729:1..307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7729 2..307 +
1622930959.655425-UTR-H-paniculata_contig7729:667..6861622930959.655425-UTR-H-paniculata_contig7729:667..686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7729 668..686 +
1691481528.191613-UTR-H-paniculata_contig7729:667..6861691481528.191613-UTR-H-paniculata_contig7729:667..686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7729 668..686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.6426942-CDS-H-paniculata_contig7729:307..6671622930959.6426942-CDS-H-paniculata_contig7729:307..667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7729 308..667 +
1691481528.1828012-CDS-H-paniculata_contig7729:307..6671691481528.1828012-CDS-H-paniculata_contig7729:307..667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7729 308..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7729.15753.1

>prot_H-paniculata_contig7729.15753.1 ID=prot_H-paniculata_contig7729.15753.1|Name=mRNA_H-paniculata_contig7729.15753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MKWFLPITSIDTFNSRRFRPISNFLLESPLRFIHNPRIKKGLSLWHPPFS
SNSQIYKTKTGGMRQICQGQTASRRPDLHDLKHDLHYERSKTTITYVKKN
MITIVQHAEGLLHGLFQCY*
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mRNA from alignment at H-paniculata_contig7729:2..686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7729.15753.1 ID=mRNA_H-paniculata_contig7729.15753.1|Name=mRNA_H-paniculata_contig7729.15753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=685bp|location=Sequence derived from alignment at H-paniculata_contig7729:2..686+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACCCGGTTCGGCCGAATCAAGTAGGCAGTGTGGGGGTTGCACCCACT
AAAAGACCTCTGACTAGACATATCCAGTCATGCTCAGTTCACGAGCTACC
CTACCCGTTCGGGCGTAGCTCCGTGGTTTAGTATTCAGGTGTATACTATA
CTATACTATACTATAGGAGGGTGTAGTCATGTTCTGCATGCCGTGGTTGT
TAAGTCCTTTTGTCTCGCGGGCCTTGGGAAGACGGAGCTTTGTTCCTGTT
AGAGCAATTTTCGATGGCCAATCAATCCCTCTTTCTTACGTTGCCAAATG
TGACTCATGAAATGGTTTTTACCCATCACATCTATTGATACCTTTAACTC
TCGCCGTTTCAGGCCAATTTCCAATTTCCTCCTAGAATCGCCATTGCGTT
TTATTCACAATCCCAGGATTAAAAAAGGCCTCTCTCTATGGCATCCTCCA
TTTTCCTCGAATTCACAAATATACAAAACAAAAACGGGGGGCATGCGCCA
AATTTGCCAAGGACAAACAGCATCGAGACGCCCTGATTTACACGATTTAA
AACACGATTTACATTACGAAAGGTCCAAAACGACTATAACGTACGTTAAA
AAAAACATGATAACAATCGTCCAACACGCCGAAGGTCTTCTCCATGGCTT
GTTCCAATGCTATTGACTTACTCATCCATGAAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig7729:2..686+

>mRNA_H-paniculata_contig7729.15753.1 ID=mRNA_H-paniculata_contig7729.15753.1|Name=mRNA_H-paniculata_contig7729.15753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig7729:2..686+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATGGTTTTTACCCATCACATCTATTGATACCTTTAACTCTCGCCG
TTTCAGGCCAATTTCCAATTTCCTCCTAGAATCGCCATTGCGTTTTATTC
ACAATCCCAGGATTAAAAAAGGCCTCTCTCTATGGCATCCTCCATTTTCC
TCGAATTCACAAATATACAAAACAAAAACGGGGGGCATGCGCCAAATTTG
CCAAGGACAAACAGCATCGAGACGCCCTGATTTACACGATTTAAAACACG
ATTTACATTACGAAAGGTCCAAAACGACTATAACGTACGTTAAAAAAAAC
ATGATAACAATCGTCCAACACGCCGAAGGTCTTCTCCATGGCTTGTTCCA
ATGCTATTGAATGAAATGGTTTTTACCCATCACATCTATTGATACCTTTA
ACTCTCGCCGTTTCAGGCCAATTTCCAATTTCCTCCTAGAATCGCCATTG
CGTTTTATTCACAATCCCAGGATTAAAAAAGGCCTCTCTCTATGGCATCC
TCCATTTTCCTCGAATTCACAAATATACAAAACAAAAACGGGGGGCATGC
GCCAAATTTGCCAAGGACAAACAGCATCGAGACGCCCTGATTTACACGAT
TTAAAACACGATTTACATTACGAAAGGTCCAAAACGACTATAACGTACGT
TAAAAAAAACATGATAACAATCGTCCAACACGCCGAAGGTCTTCTCCATG
GCTTGTTCCAATGCTATTGA
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