mRNA_H-paniculata_contig7722.15745.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7722.15745.1
Unique NamemRNA_H-paniculata_contig7722.15745.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A6H5JS11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS11_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 4.490e-74
Identity = 126/150 (84.00%), Postives = 142/150 (94.67%), Query Frame = 2 
Query:  140 RDYREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIE 589
            RD++EEEEMIR+TVSKFAADVI PRVRDMD  S MDP V+ GLFE+GLMGVEAPEE+GGSGLNFMSACIV+EE+A+VDPAVAV+VDIQNTLI+NMLRFWG++ELQ+KYFPKL SGSVSSFCLSEVG+GSDAFSL+TKATLSPD SYYTIE
Sbjct:   28 RDFQEEEEMIRDTVSKFAADVIGPRVRDMDTESTMDPAVVSGLFEHGLMGVEAPEEFGGSGLNFMSACIVVEEVAKVDPAVAVLVDIQNTLISNMLRFWGSRELQEKYFPKLCSGSVSSFCLSEVGSGSDAFSLATKATLSPDRSYYTIE 177
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A835ZGF4_9STRA (Acyl-CoA dehydrogenase/oxidase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF4_9STRA)

HSP 1 Score: 202 bits (514), Expect = 9.930e-55
Identity = 105/150 (70.00%), Postives = 124/150 (82.67%), Query Frame = 2 
Query:  152 EEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQ--NTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIEAS 595
            E+E MI++ V++F+ DVI PRVRDMD  S MDP V+ GLFENGLM VE P E+GGSGL F+SAC+VIEEIA+VDPAVAV+VDIQ  NTL+NNMLRFWGT E Q KYFP L  G+V+SFCLSE G+GSDAF+L+T AT S DGSYYTIE +
Sbjct:    2 EDELMIQDMVARFSNDVIKPRVRDMDDASKMDPAVLSGLFENGLMSVEVPTEHGGSGLGFVSACLVIEEIAKVDPAVAVLVDIQATNTLLNNMLRFWGTPEQQAKYFPLLGHGTVASFCLSEPGSGSDAFALATTATRSADGSYYTIEGA 151
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A7S1S3N8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S3N8_ALECA)

HSP 1 Score: 191 bits (484), Expect = 8.620e-50
Identity = 88/147 (59.86%), Postives = 119/147 (80.95%), Query Frame = 2 
Query:  146 YREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTI 586
            Y E+EEM+RE   +FAAD++AP+V++MDATS MDP +I  LFENGLMGVE PE YGG+G +F + C+VIEE+A+VDPAVA  VD+ +T++NN + FWG++E++ +Y PKL +  + SFCLSE G+GSDAFSL+T+A  S DGS+YTI
Sbjct:   72 YTEDEEMLREMAGRFAADIVAPKVKEMDATSTMDPGLIAALFENGLMGVEVPEAYGGAGASFTAMCLVIEELAKVDPAVAACVDVHSTVVNNTIGFWGSEEIKAQYLPKLATEFMGSFCLSEAGSGSDAFSLTTRAVPSADGSFYTI 218
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A6U3UKG5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UKG5_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.670e-46
Identity = 86/148 (58.11%), Postives = 116/148 (78.38%), Query Frame = 2 
Query:  146 YREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIE 589
            + E+EEM+R+    +A +V+ P VRDMD      PDVI GLF++G MG+E PEEYGGS +NF SAC+V+EE++RVDP+V+++VDI NTL NN +RFWG+KEL++K+ P+L S +VSSF LSE G+G+DAF+L T AT S DGSYYT+ 
Sbjct:   69 FTEDEEMVRDGARHWANEVLRPLVRDMDNEGKTRPDVIQGLFDHGFMGMEIPEEYGGSEMNFTSACLVVEELSRVDPSVSILVDIHNTLTNNAVRFWGSKELKEKWLPRLASEAVSSFALSEAGSGTDAFALKTTATASSDGSYYTLN 216
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A642US95_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642US95_9ASCO)

HSP 1 Score: 181 bits (458), Expect = 1.740e-46
Identity = 91/182 (50.00%), Postives = 125/182 (68.68%), Query Frame = 2 
Query:   53 SARITTKRPAIPVVALTTGKRFMTTAGLP-RDYREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIEAS 595
            +AR   +  A+P  A +   R M     P   + EEEEM ++TV++F+ +V+ P  R+MD   AMDP ++  +FENG MGVE PEEYGG+G +F SA IV+EE+A+VDP+V+V+ D+ NTL+N  +R WG+  L++ Y P+L    V SFCLSE  +GSDAF+L TKAT S DGSYYT+E S
Sbjct:    9 NARPALRTAAVPRRAFSVSSRLMQQKIAPLTQFTEEEEMFKQTVAQFSEEVVGPLAREMDENEAMDPSIVKAMFENGFMGVETPEEYGGAGASFTSAIIVVEELAKVDPSVSVMNDVHNTLVNTCIRKWGSDHLKNTYLPQLAESKVGSFCLSEPVSGSDAFALKTKATPSEDGSYYTLEGS 190
[Close]
BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A8H8JG66_9AGAM (Acyl-CoA dehydrogenase n=3 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JG66_9AGAM)

HSP 1 Score: 178 bits (451), Expect = 1.880e-45
Identity = 85/151 (56.29%), Postives = 113/151 (74.83%), Query Frame = 2 
Query:  143 DYREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIEAS 595
            ++ EEE M+R+ VS+FA DV+APRVR+MD    MDP +I GLFENGLMG+E   ++GG+G +F SA I IEE+A++DP+V+V+ D+ NTL+N + R + TKE QDK+ P+L    V SFCLSE  +GSDAF+L T+A  S DGSYYTI  S
Sbjct:   46 NFTEEETMLRDVVSRFAKDVVAPRVREMDEAEKMDPSIIQGLFENGLMGIETSPDHGGAGSSFTSAIIAIEELAKIDPSVSVMCDVHNTLVNTIFRTYATKEQQDKFLPQLAESKVGSFCLSEPASGSDAFALQTRAVPSEDGSYYTITGS 196
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A5E8BC50_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BC50_9ASCO)

HSP 1 Score: 177 bits (449), Expect = 3.470e-45
Identity = 87/144 (60.42%), Postives = 113/144 (78.47%), Query Frame = 2 
Query:  146 YREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSY 577
            + E+E M ++TV+KFAADV+APRVR+MD    MDP VI G+F+NGLMGVE PEEYGG+G +F SA +V+EE+ARVDP+V+V  D+ NTL++  +R WG+KEL+DKY P L S  V SFCLSE  +GSDAF+L T+AT + DG Y
Sbjct:   46 FSEDELMFKDTVAKFAADVVAPRVREMDEKEDMDPAVIQGMFDNGLMGVETPEEYGGAGASFTSAILVVEELARVDPSVSVCNDVHNTLVSTCVRSWGSKELKDKYMPILNSERVGSFCLSEPVSGSDAFALKTRATKNADGDY 189
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A8H7IK23_9AGAM (Acyl-CoA oxidase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7IK23_9AGAM)

HSP 1 Score: 176 bits (445), Expect = 4.410e-45
Identity = 83/150 (55.33%), Postives = 112/150 (74.67%), Query Frame = 2 
Query:  146 YREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIEAS 595
            + EEEEM+R+ VS+FA +V+AP+VR+MD    MDP ++ GLFENGLMG+E   ++GGSG +F SA I IEE+A++DP+V+V+ D+ NTL+N + R + TKE Q KY P+L    V SFCLSE  +GSDAF+L T+A  S DGSYYT+  S
Sbjct:   42 FTEEEEMLRDVVSRFAREVVAPKVREMDEAEKMDPSIVKGLFENGLMGIETDPDHGGSGSSFTSAIIAIEELAKIDPSVSVLCDVHNTLVNTIFRTYATKEQQSKYLPQLAEKKVGSFCLSEPASGSDAFALQTRAVPSDDGSYYTLTGS 191
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BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: A0A7S1CX26_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX26_CYCTE)

HSP 1 Score: 176 bits (445), Expect = 1.700e-44
Identity = 86/150 (57.33%), Postives = 114/150 (76.00%), Query Frame = 2 
Query:  146 YREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIEAS 595
            + E+EEMIR  V +++   + P VR+MD    + P+++  LF+NG MG+E PEEYGGS L+F SAC+V+EEI+RVDP+VAV+VDI NTL  N LRFWG+ ELQ ++ P+L + +VSSF LSE GAGSDAF++ T AT SPDGSYYTI  +
Sbjct:   60 FTEDEEMIRYAVRQWSTQELKPIVREMDDEGCLRPNILQDLFDNGFMGMEIPEEYGGSELSFTSACLVVEEISRVDPSVAVLVDIHNTLTINALRFWGSAELQQQWLPRLATDTVSSFALSEAGAGSDAFAMKTTATPSPDGSYYTINGT 209
[Close]
BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Match: J6EVN4_TRIAS (Acyl-CoA oxidase n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6EVN4_TRIAS)

HSP 1 Score: 175 bits (443), Expect = 2.040e-44
Identity = 91/186 (48.92%), Postives = 121/186 (65.05%), Query Frame = 2 
Query:   74 RPAIPVVALTTGKRFMTTAGLPRDY------------REEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGLFENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLINNMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPDGSYYTIEAS 595
            R A  V  +   + F  TAG   DY             EEE M+R++V KFA +VI PRVR+MD    MDP++I GLF+NGLMG+E PEEYGG+G +F SA I +EEI+RVDP+VAV+VD+ NTL+N ++R  G+  +++K+ P L    V SFCL+E GAGSDAF L T A L P G +Y +  +
Sbjct:    7 RTATRVSRVANARAFSATAGRMNDYPTVEKGQSLWNFTEEENMLRDSVKKFADEVIQPRVREMDEKEIMDPELIQGLFDNGLMGIEIPEEYGGAGCSFTSAIIAVEEISRVDPSVAVLVDVHNTLVNTVVRHHGSDAIKEKWLPGLAQEKVGSFCLTEPGAGSDAFGLQTTAKLDPSGDFYVLNGT 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7722.15745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS11_9PHAE4.490e-7484.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZGF4_9STRA9.930e-5570.00Acyl-CoA dehydrogenase/oxidase (Fragment) n=1 Tax=... [more]
A0A7S1S3N8_ALECA8.620e-5059.86Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6U3UKG5_9STRA1.670e-4658.11Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A642US95_9ASCO1.740e-4650.00Uncharacterized protein n=1 Tax=Trichomonascus cif... [more]
A0A8H8JG66_9AGAM1.880e-4556.29Acyl-CoA dehydrogenase n=3 Tax=Ceratobasidium sp. ... [more]
A0A5E8BC50_9ASCO3.470e-4560.42Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A8H7IK23_9AGAM4.410e-4555.33Acyl-CoA oxidase n=1 Tax=Rhizoctonia solani TaxID=... [more]
A0A7S1CX26_CYCTE1.700e-4457.33Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
J6EVN4_TRIAS2.040e-4448.92Acyl-CoA oxidase n=2 Tax=Trichosporon asahii var. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7722contigH-paniculata_contig7722:674..8424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.2
Seed ortholog evalue3.5e-67
Seed eggNOG ortholog2880.D7FWS9
Preferred nameACADSB
KEGG rclassRC00052,RC00068,RC00076,RC00148
KEGG koko:K09478,ko:K18402
KEGG ReactionR01175,R02661,R03172,R04751
KEGG Pathwayko00071,ko00280,ko01100,ko01110,ko01212,map00071,map00280,map01100,map01110,map01212
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006520,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009150,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016937,GO:0019395,GO:0019637,GO:0019693,GO:0019752,GO:0022900,GO:0030258,GO:0031974,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034440,GO:0034641,GO:0035383,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046395,GO:0046483,GO:0050829,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072521,GO:0098542,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
EggNOG OGsCOG1960@1,KOG0139@2759
Ec32 ortholog descriptionacyl-CoA dehydrogenase
Ec32 orthologEc-16_004260.1
EC1.3.99.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons4
Model size2206
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7722.15745.1prot_H-paniculata_contig7722.15745.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7722 792..6807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.3480282-UTR-H-paniculata_contig7722:673..7911622930958.3480282-UTR-H-paniculata_contig7722:673..791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7722 674..791 +
1691481527.601584-UTR-H-paniculata_contig7722:673..7911691481527.601584-UTR-H-paniculata_contig7722:673..791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7722 674..791 +
1622930958.4459183-UTR-H-paniculata_contig7722:6807..72191622930958.4459183-UTR-H-paniculata_contig7722:6807..7219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7722 6808..7219 +
1691481527.64244-UTR-H-paniculata_contig7722:6807..72191691481527.64244-UTR-H-paniculata_contig7722:6807..7219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7722 6808..7219 +
1622930958.4684286-UTR-H-paniculata_contig7722:7261..84241622930958.4684286-UTR-H-paniculata_contig7722:7261..8424Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7722 7262..8424 +
1691481527.652745-UTR-H-paniculata_contig7722:7261..84241691481527.652745-UTR-H-paniculata_contig7722:7261..8424Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7722 7262..8424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.3732784-CDS-H-paniculata_contig7722:791..8521622930958.3732784-CDS-H-paniculata_contig7722:791..852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7722 792..852 +
1691481527.61463-CDS-H-paniculata_contig7722:791..8521691481527.61463-CDS-H-paniculata_contig7722:791..852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7722 792..852 +
1622930958.3939414-CDS-H-paniculata_contig7722:3163..34131622930958.3939414-CDS-H-paniculata_contig7722:3163..3413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7722 3164..3413 +
1691481527.6237931-CDS-H-paniculata_contig7722:3163..34131691481527.6237931-CDS-H-paniculata_contig7722:3163..3413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7722 3164..3413 +
1622930958.4143722-CDS-H-paniculata_contig7722:6605..68071622930958.4143722-CDS-H-paniculata_contig7722:6605..6807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7722 6606..6807 +
1691481527.632773-CDS-H-paniculata_contig7722:6605..68071691481527.632773-CDS-H-paniculata_contig7722:6605..6807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7722 6606..6807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7722.15745.1

>prot_H-paniculata_contig7722.15745.1 ID=prot_H-paniculata_contig7722.15745.1|Name=mRNA_H-paniculata_contig7722.15745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MTTAGLPRDYREEEEMIRETVSKFAADVIAPRVRDMDATSAMDPDVILGL
FENGLMGVEAPEEYGGSGLNFMSACIVIEEIARVDPAVAVVVDIQNTLIN
NMLRFWGTKELQDKYFPKLISGSVSSFCLSEVGAGSDAFSLSTKATLSPD
GSYYTIEASAPCLLLFFLMS*
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mRNA from alignment at H-paniculata_contig7722:674..8424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7722.15745.1 ID=mRNA_H-paniculata_contig7722.15745.1|Name=mRNA_H-paniculata_contig7722.15745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7751bp|location=Sequence derived from alignment at H-paniculata_contig7722:674..8424+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGCAGGAGGTGCGCATTTCACCACTATCCGGGCCGTGCGCACTACGG
CATCGGCAAGAATCACAACGAAGCGGCCAGCAATACCCGTCGTCGCCCTC
ACCACGGGGAAGAGATTCATGACGACCGCGGGCCTGCCGCGCGACTACAG
GGAAGAAGAAGAAATGATCCGAGAGACTGGTGAGACAGAAGGAAACAGGC
AAAGAAAGTAGTCGCTAACGACAAGTATCATCCGTCCCGACAGCTTGTAT
GCAAAAACGAAAATAGTGTAATACAGCAAAGTGTTTTTTTCTCGGCGGTA
TCTTTTTACGAGAGAGCTTTAGATCAGTTTGGTGGGCTTGCTGCTGGGTT
TATGTGATGGAGAATTACTAGTAGTGTTCGTTAAACACATGGCGAGTTTT
CAGTTGTAAGAAGAGATGTATAATAGCAGCGTCGAAGTGAAATTTCCTCG
AGAAAACCCCGTTCAAATCCTGCACTCCTCTTCGCTAGCAAGCAGTGTAA
AAATTTTGCGTCCATCATGTTTTCAAAAAGATACTGAAGTTTGTAAATGC
ACGTATAACCCTGACAAAAACGGCTCAACATAATATACTGTACTGTACTT
CCCCAAAGTATTCGCCCTCCGTCCCCGTTCCCCGCCAAAAAGCAACGCAA
CACCAAAAAATGTACATCAACGGTCTTCCTGTCTTTGCAGCAAAAAATCC
ACGGGTCTTCACGGTAGGGTTTTTTTTATAATGACCAAAGGGTACCGTAA
AATATCCCACGGTAAAAACCGGGTAGTCACGGTAAAAAGTGTCGACCAGA
TGCCGTGGGCAACCGGTTATCGCATGTCATGCTATCGGTAATGACTTGCC
ACGGTAACTGTGCGCTACAGTAGAGGCCGATCTCGGTAGAGGAACGGTAT
AGAAGGGTACGGTAATCGCCGACTGCGGTAGCTGTACGGTAAAGTAACGA
GAAGAGGTCCCGCGATACGGTAGTGGCCGGATCACGGCAACACGTGCAGT
AATTCACTCTAGGGGTATTTGATGCTAGCACTGTGGCTACACACTGTACG
TACGACGCAAGTAAGCAGGTTTTACAGGTTCTCTTTGTTGTAGCTCTCGA
GTACATTTTGGACGAACAACGAACATGATTATGGCATATTTATTAGAAAA
ACAAAGTGGAACGAGCAAAAGAGCATCGAAGCGAAAGAAAAAATTGTTTC
GGACAGCGCTGCATTTTTTGCTTGCACTATCTTGTTTACGAAGGATGCAA
ACGCAGAACGCCTGTTCGCGGTGCGTGCTCTACTGAATACATGAACCGAT
GGGAACGGTCCGTAGGAAGTTCGTAGAATCCTTCTGGATGGTCGCTAGGA
ACGTTTGTGAGAACCATCCTGGGTTTACGGGGCTATTGTTTGTTGCTATG
GTGCACACGGGGTTTGGGCCTGCCCACCTTGGTCACTTCACCCATCCTAC
CCAACCTAGCCAAACTTCCTTCTGTGAATCTAGCTGCAGTAGGGAGACCA
CTGTTTCAGCAGAAGAAGTGGATACCTTCGAGGGCTTGGAGATGTTAATA
AAAGGTTTTAAAAAGGATATCATCAACTAACTCGCTTCTAGAGCACGCCT
GAGACTGCACAGACGGTCGAGAAGGGGAAGCCGTGCCAGCGTTCGCCAGG
AGATATCGAACAACACCTTCGACAATCCGCAGCCACAGACGGTTTATCGG
GTTCTGGCATAACACACATACACATCCATACAATCGCTCAGACCCGCAAG
TCACTAGGAAATATATGTATATTGTTTTTTCGAAATGTATATGTAGTGAT
TGTTTAGGTGATTTTCATACTCCAGACTACGTTCTTACCTCACGCGTTAT
GGTCCATCCACACCTGTTCTAACAGTACTGATTGCCATGTAAGGTACCTG
TACGGTACGGTGCGTAGGTTGGACAGTATTGTACGGTACGGTAACATCAT
GTCTACGGATTTTTCACTAATTTTCACTAAGTCACGGTACGGCACCGTAC
TCGTTTCACCCCTTTACAACAGCTCAGTTCGACACAGACCTACGCCCGAA
CGGGTAGGGTAGCTCGTGAACTGAGCATGACTAAAGTCTAGTCAGAGGTC
TTTAAGTGGGTACAACCCCCACATTGCCTACTTGGTTCGGCCAAACCGAG
GTAGCTCCTACCCCGCAGAGGAGTAAATAACTCTATTCTGTAAAAGGAAA
TGTAGACATACTTTGGTAAAATACTTGAGTATGGAAGCATCGGATAAAGG
TTTTTGCCTCAGCCTCCCGGGGGTTAAAAAAAACAAAACAGCAAAAAGCG
AAGTACAGGAATAGTCAATTTCCACGATATTACGGTGGTATACCATCACC
GTGGTTTGCTGTAGTTATTGAACCGCAGCAGAAGAAGACGTGGAAGACCC
GTGAAAACATTAGCACACAACACACAAGAGAGTGTACGTACATAAGAACC
GTGATAAATATGTCGGGATTTTGTTGTTGTATGTCCCCAGTGTCCAAGTT
CGCCGCCGATGTGATCGCGCCGCGGGTTCGCGACATGGACGCCACGAGCG
CCATGGATCCAGACGTCATATTGGGGCTGTTCGAGAACGGGTTGATGGGG
GTCGAGGCGCCGGAGGAGTACGGGGGAAGCGGTCTGAACTTTATGTCGGC
TTGCATCGTGATAGAGGAGATCGCCAGGGTGGACCCCGCGGTCGCTGTCG
TCGTGGATATCCAGAATACGCTCATCAACAACATGCTTAGGTATTTTGTT
GTTGTATTTTTCACCGTGAGAAAGCTTCGGGAAAAGTGTCATAACTTGGG
AAGTTATGAAAACTCTTACAACTCGAAAACTGTCCATTTTTATTCCCTGC
TAACATACCACGCAACTCATTTCGGGATCTTTGGTGCGGATTTCATTGTT
TTTAGAATTATATACAGTATACTCCCTCTGTCTCATATGTCTGTCCGGTT
TGGCGCCATGAGGCATACATTTTTACCCCCCTTGGGTTATACACCACAAA
ACTATATACCATTCGAAAGCCCTTAATTTCCGCTATCTCCTGGATGTTTT
CAAAATACAGTTCCGATTTGTTAACATTCCGAAAGTCCAAGGTAAAAAGA
AAACGGCTCTTTTTTTTAGTCAGAAATTTCTAAAAAACAGGGGACTTTTG
TTTTCTGTGTATTTTTTTCAGTTGCAGCCCCCCTACACCACACACAGCAC
CATGGTAAGCCCTCCCAGCCCACCGCTGAGCCCTGCCAGTCCTCGTACTT
ATCCGCGAGCGCTTTGTATGTGCCATGGGGCATCTTGGTCTGCCCGGGTG
GCAACGCCATTGCACACCGTAATGCCAATCCGTAACGAGATTCTGTAGAG
AGCTCTCCGTGTTTGATACGACGGGATGGGCTTCCAGGGTGTAATGATGG
GCTTGGAGGACTAGGCACCGCCCGCCTAAGGTTCACCGTTGGACTGGCAG
GGCTCAGCGTTGGGCTGGGAGGACTTGCCATGGTGCTGTGTGTGGTGTAG
GGGGGCTGCAACTGAAAAAAATACACAGAAAACAAAAGTCCCCTGTTTTT
TAGAAATTTCTGACTAAAAAAAAGAGCCGTTTTCTTTTTACCTTGGACTT
TCGGAGTGTTAAGAAATCGGAATTGTATTTTGAAAACATCAAGAAGATAG
CGGAAATCAAGGGCTTTCGAATGGTATATAGTTTTGTGGTGTATAACCCA
AGGGGGGTAGAAATGTATGCCTCATGGCGCCAAACCGGACAGACATATGA
GACAGAGGGAGTATATATTTACGAATTAGTAATATAAAGATTCAACCGTG
GGTAAGGATTATAAAGGAATGGACCAGGTGGCGCACTATTACTATTTAAG
AGGTTGAACAGGGAAAAAAGCAAAAAACAAACTCAGTAGGTCGGATAGCA
TGTGTTTTGAAGAAAAGTATGACTGTGAAAGCTGCTCCAGTTGCGCTGCT
ATATATATATATATTTTTAATGAAGGGCCTCGGCGGGGTAACAACCTATT
TATGATCAGGCGGAGGTAAGCTGCGGATTGTGACTGAAGGATAACTTTAA
AGGAAAAGGCACGGGAAAAAATAAGCCGTCTATTAAACGTGGCAAGCTGA
AAACTTGAAAAGTCATGGAGCTGAAGTTCTATAGGTAGGTATAAGAGCCG
GTGTTGAGTTGTTATGAAACGTGTTATGAGCTAGGTCGCTCTTTGTTATT
TTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTATGTGTGTCTCTGTGTGT
GTCTGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGT
CTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTGTTTCATTTTAGTAAGTC
GACGTGTTTGCTTTGATATGGCAGACATGGAAGAAAAACCAGCACACACC
TCAGGAGAGCACACCGTTTATTGTATCCTTCTTTTCTTGTTTTTCCCGTA
ATTTTCTTGTTTATCTTTTCCAACTTCAGGTTGGTTTTTGCACTCGTGTT
CGGTTACAAAGTATTGTTTTGGGCATGCCTATCGTCTGACCGCGGATCTG
ATCAGTTGGACTAGAGTGTTCTAATTACCAAAAAAAAAAGGAGCGTTAAC
GGAGCTTGATGTTTACAAAACAAAGCCCATGTTTTGTTTTGTAGTTTCTG
GTAAGACGATACTAATTGCTGTTCTTTTCCTGGTCAGTTTACTCCGGGTA
GGCACATCGGATTCCTTGCGAGCTATCGGGCAAAACGCATTTTCCTCAGC
TTTTCTTTAGCGTGACTCGTTTTGCCGTTTTCTCCCCCCTCTAACCACGG
GTCCCCCCCATCTAGCAAAAGTGATTATTTTACAGAGTGTAGCACGTTCT
GCATTCAACGGGACCCTCCGACATGTATATATAAAGTCGTGCGTGCGCAT
TGTGTGTTATACAATTTTTCGAAAACACGTGATTTGGTTATATACTCCAC
AAAAAGAACAAACGGGAGCATCCGCCCTCCCTGTCACGAAGACGCGCACC
CGTTCGCGCTCACATGTCCATGGCTTCATCAAGTGAGTGTTTGCTTTTTT
CTCCTTCCATGATTTTCTCCTTCCATGATTTTCTCATGCCATAAGAAAAG
GTTCCAAAAGATGCTCGGTTTGCCCTTGTTGCACAGGTTTGCAATGCTTG
TTTGCGTGGTCAACGGCTTTGTACTTCAACCTGTACCTGACTAATTCGTG
TCTAGGTCCATTTGCTTACTTCTGGTCCATATTCATGGCTGAACGCTCTC
TCGTCACGTGATATACTATACGGGTTTTCCTCCAGTAGAGATGACAAACG
AGCGACGGGGCAGACGATTCAATTGTTATTTTCCCCGTCCGCCCCATTTT
TTTTTTTTTTCACATGTAAGTTTTGTGGGATAGCTGGTTGCTTGTGTAGC
TAGCTATGCATCGCTTCTTCTGCTTCGCTGTGATGCCCTTTTCCCCCCTT
CATTACACAAGCAGAATTCTAGACTGCTATTAATAGTACAACAGTATAAG
GTCATCCGAGTTTCGATGTTGTTGTTGAAGTTTTTGTGCATCTTCCTGAG
GTTTTCGAGGTAGTTCGCTACCGAGATTTTTCGTTACCAAAGTCCCAAGA
TTTTTTTTTTTTTTTTTTTTCTTTCCGAAACTGTCTAATCTCGGAGATGA
ACGAAAAATCTGTGAATAGATAAAAATGATAACTATGATAGCATCTCTTT
GATCATTTTGCTGAGAAGATCATTTGCATTGAAGTGAGTCTACCTCTGGT
TGGTTCGAATTCATAACGCGCACAAGCACAGGCACACGCACATACACACA
CACACACACACACACACACACACACACACACACGCACATACACACACACG
TACACACACACGTACACACACACGTACACACAAACACACTCACACACTCA
CACACCCACACACACACACACAACCCCGGCAGATTCTGGGGCACGAAGGA
GTTGCAGGATAAGTATTTCCCAAAGCTTATTTCGGGGAGTGTGTCAAGCT
TCTGCCTGTCGGAAGTGGGAGCAGGAAGCGACGCCTTCAGCCTTTCCACC
AAAGCTACCTTGTCTCCCGATGGCTCCTACTACACGATAGAGGCGAGTGC
TCCCTGCCTGTTATTATTTTTTTTAATGTCATAATGCAAGGTGGTGGTGG
TCGTCGATTCGGAACAGTTTTCAACTCTATACTCCCAAGTAAGGGCCCAA
GGCACGATTCTTAACGCGGACATTGTGTCTACTTGCGAGCGTAGCGACCC
ACCTGCGAACGCGGCACGAAAGATTTTGCGAGAGGTTGAGGGACAACGGT
GGCTTTATGGGAGTAGTTGTGGCTCTACTGCAGAACTCGTATTTTTTGTG
GTCGGGGTTGTCATGGGGATGTTGCGGAAGGAGCTCTATACTACTTTTGT
TTTTTGTTTTCCCCATCGTGTGTTCAATTTGATGATGCTCTCTACATTGA
AACCAGAGCGTCCTGATAAAAGTGTCGGCAGCAGCGTTTGCTAACTTTTG
ATGTACAGTACAGTACAGTATTTCGGTGTTGATGCTTTGGTTATGGCTCT
ACAGTCAGTAGAGTTCTAATCGTACTATTATTATTATTATTATTATTATT
ATTATTTTATTTTATTTTTATTTTATTTTTTAACCCCCGGAAGGCTAGGG
CAAAAAACTTTATCCGATGCTTCCATATTTAAGTATTTCTACCGAAGCAT
TTCTATATTTCCTTTCAACAGAACATAGTTATTTATTCCTCTGCGGGATA
CGCGCCAGCCACCCCGGTTCGGCCGAACCAAGTAGGCAATGTGGAGGTTG
CACCCACTAAAAGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGA
GCTACCCTACCCGTTCGGGCGTAGGTCCGTGCCCCCTCTTTGTCTGCAGT
CGGTAGGACAGGAAATATCATTTTGTGCCGCCTTTGCCAGACTATGAAGA
ATGAAGGCTGGTCATCCGTCCTTGTATCCCGGAAGTAAAAACGCGCGCAC
CAGTCTCGCGTGTCGAATAGATGCGTCATGTTCCAGACTTTTGCTCTTGA
TGCCCAGAATGGGACAGATCCCCGAGCGCAGGACTGCGTGGTCAGGTGCC
TCCATTGCAACCTCTAGTCGTGTTTCACTGCGCCAGCACGCGGCGGGGGG
CGACGATGGCCACCGACAAGACAGAAAGTCCGATTCATACTGTCTGACCG
TGGCCCTTGCCTTCTCGACGCAGGTCAGCCCGGTCAATTTACCGACTAGC
ATCGGCAAGGAAACGACTAACCACAGCTCCGTCCACTCTGTCGAGGACGC
TGGCAGACATGAAAACCATGAGTGCTTCCCCCCCCCCGTTGTATCGGTTA
TGATTTACTAGTGATGATGCATTGTTTTCTGGTGATAAATGCATCACTGG
CGATGATGAGTAAAAACTATTTAGTACACACAGTATGAAGCACAAGCTGC
TCCATCACCTCAGCGTGAGTGCGTACATACACGTGGATAGGTAATCCCCG
CTTGAATGCATACGCGAGTGACTCGTTTTTTAGATTGTGTCGTGTAGAAC
ATTTCTTCGTGGTGTTTTCATCTCGAGAGGACGAAACTGGCAGCTCACAT
CCTGCTTACCAATACTATTAATAGTACAGGTATTTGACCTAGTGATGGGT
TTGAGGTATCTACACGTTCATGTTTTGTCTTTCTTGGAACATGCCACATC
TCAAAAAATCGTCTTTTTTTTTTGGGGGGGGGAGGGGTTCATCGCACTAC
C
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Coding sequence (CDS) from alignment at H-paniculata_contig7722:674..8424+

>mRNA_H-paniculata_contig7722.15745.1 ID=mRNA_H-paniculata_contig7722.15745.1|Name=mRNA_H-paniculata_contig7722.15745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig7722:674..8424+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACCGCGGGCCTGCCGCGCGACTACAGGGAAGAAGAAGAAATGAT
CCGAGAGACTGATGACGACCGCGGGCCTGCCGCGCGACTACAGGGAAGAA
GAAGAAATGATCCGAGAGACTGTGTCCAAGTTCGCCGCCGATGTGATCGC
GCCGCGGGTTCGCGACATGGACGCCACGAGCGCCATGGATCCAGACGTCA
TATTGGGGCTGTTCGAGAACGGGTTGATGGGGGTCGAGGCGCCGGAGGAG
TACGGGGGAAGCGGTCTGAACTTTATGTCGGCTTGCATCGTGATAGAGGA
GATCGCCAGGGTGGACCCCGCGGTCGCTGTCGTCGTGGATATCCAGAATA
CGCTCATCAACAACATGCTTAGTGTCCAAGTTCGCCGCCGATGTGATCGC
GCCGCGGGTTCGCGACATGGACGCCACGAGCGCCATGGATCCAGACGTCA
TATTGGGGCTGTTCGAGAACGGGTTGATGGGGGTCGAGGCGCCGGAGGAG
TACGGGGGAAGCGGTCTGAACTTTATGTCGGCTTGCATCGTGATAGAGGA
GATCGCCAGGGTGGACCCCGCGGTCGCTGTCGTCGTGGATATCCAGAATA
CGCTCATCAACAACATGCTTAGATTCTGGGGCACGAAGGAGTTGCAGGAT
AAGTATTTCCCAAAGCTTATTTCGGGGAGTGTGTCAAGCTTCTGCCTGTC
GGAAGTGGGAGCAGGAAGCGACGCCTTCAGCCTTTCCACCAAAGCTACCT
TGTCTCCCGATGGCTCCTACTACACGATAGAGGCGAGTGCTCCCTGCCTG
TTATTATTTTTTTTAATGTCATAAATTCTGGGGCACGAAGGAGTTGCAGG
ATAAGTATTTCCCAAAGCTTATTTCGGGGAGTGTGTCAAGCTTCTGCCTG
TCGGAAGTGGGAGCAGGAAGCGACGCCTTCAGCCTTTCCACCAAAGCTAC
CTTGTCTCCCGATGGCTCCTACTACACGATAGAGGCGAGTGCTCCCTGCC
TGTTATTATTTTTTTTAATGTCATAA
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