mRNA_H-paniculata_contig7721.15743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7721.15743.1
Unique NamemRNA_H-paniculata_contig7721.15743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7721.15743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7721contigH-paniculata_contig7721:3124..3941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.2037575-CDS-H-paniculata_contig7721:3123..31851622930958.2037575-CDS-H-paniculata_contig7721:3123..3185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7721 3124..3185 -
1691481527.564495-CDS-H-paniculata_contig7721:3123..31851691481527.564495-CDS-H-paniculata_contig7721:3123..3185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7721 3124..3185 -
1622930958.2282362-CDS-H-paniculata_contig7721:3730..39411622930958.2282362-CDS-H-paniculata_contig7721:3730..3941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7721 3731..3941 -
1691481527.575496-CDS-H-paniculata_contig7721:3730..39411691481527.575496-CDS-H-paniculata_contig7721:3730..3941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7721 3731..3941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7721.15743.1prot_H-paniculata_contig7721.15743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7721 3124..3941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7721.15743.1

>prot_H-paniculata_contig7721.15743.1 ID=prot_H-paniculata_contig7721.15743.1|Name=mRNA_H-paniculata_contig7721.15743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
PNDYGVGYAHFRTASLPRPQTPLTPPTEAGARGGLRTEGFRQRCSPVAVK
VGPRTRRPKRRDQERSFHPADGRLMPEGGALAKRHPTRGA*
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mRNA from alignment at H-paniculata_contig7721:3124..3941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7721.15743.1 ID=mRNA_H-paniculata_contig7721.15743.1|Name=mRNA_H-paniculata_contig7721.15743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=818bp|location=Sequence derived from alignment at H-paniculata_contig7721:3124..3941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAATGACTATGGTGTGGGATATGCCCATTTTAGAACCGCTTCTCTCCC
GCGACCCCAGACCCCGCTGACGCCGCCAACTGAAGCAGGTGCTCGTGGAG
GCTTAAGGACGGAAGGATTTCGTCAGCGGTGTTCGCCAGTAGCAGTAAAA
GTTGGACCGAGGACGAGGCGGCCGAAGCGACGCGACCAAGAAAGGAGTTT
TCACCCGGCCGGTGAGTCGCATTACTTCGGTGATGGACCTGAGGGCAGTG
TGTTTCTGGGAGAGGGATGGGTGTAGCGATGGGATTGAGATCGTCCAGAC
TGCAATTGCTTCAGTTTTCTGGGAAATCGCGCGATGTCCAAAGTTTCGGA
AAGATGCCGTAAACTTTGCGAAGACGTATGTATATGACGATGTACTGCTA
GGAGGCCTTCATGTCCGTGCTGGAGACCATACTAGATATCTAAACCACTT
CGTAGACGACGGCTTTTCGGGAGAACAGATTGAAAGTCTCATTGCTGCAT
GGCAATCATTTGACGTATGCTCTAACTTTCGCCGCGGGAAGTATGGGAAA
GGCTTGAGGAGTGGCATACGCCACAAACTTAAGGGAGAAGGCAAAAATTC
ACTGATTTCAAGATGGCAGTCGACGACAATATAGCAGACGTTTTGACTAA
GCTTGAGGAGTTAGCAGAGTTACTCACAAAAGTGGCATCACCATGCCTGA
ATCTCAAGTCCATGACACGGTTTGCCTCCCTGCTCCCTCCCGACTATGAG
TGGCAGATGGAAGACTTATGCCAGAAGGCGGAGCTCTCGCGAAACGACAT
CCTACTAGGGGTGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7721:3124..3941-

>mRNA_H-paniculata_contig7721.15743.1 ID=mRNA_H-paniculata_contig7721.15743.1|Name=mRNA_H-paniculata_contig7721.15743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig7721:3124..3941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAATGACTATGGTGTGGGATATGCCCATTTTAGAACCGCTTCTCTCCC
GCGACCCCAGACCCCGCTGACGCCGCCAACTGAAGCAGGTGCTCGTGGAG
GCTTAAGGACGGAAGGATTTCGTCAGCGGTGTTCGCCAGTAGCAGTAAAA
GTTGGACCGAGGACGAGGCGGCCGAAGCGACGCGACCAAGAAAGGAGTTT
TCACCCGGCCGCCCAATGACTATGGTGTGGGATATGCCCATTTTAGAACC
GCTTCTCTCCCGCGACCCCAGACCCCGCTGACGCCGCCAACTGAAGCAGG
TGCTCGTGGAGGCTTAAGGACGGAAGGATTTCGTCAGCGGTGTTCGCCAG
TAGCAGTAAAAGTTGGACCGAGGACGAGGCGGCCGAAGCGACGCGACCAA
GAAAGGAGTTTTCACCCGGCCGATGGAAGACTTATGCCAGAAGGCGGAGC
TCTCGCGAAACGACATCCTACTAGGGGTGCGTGAATGGAAGACTTATGCC
AGAAGGCGGAGCTCTCGCGAAACGACATCCTACTAGGGGTGCGTGA
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