mRNA_H-paniculata_contig772.15739.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig772.15739.1
Unique NamemRNA_H-paniculata_contig772.15739.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: D8LS41_ECTSI (Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS41_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 7.060e-86
Identity = 162/269 (60.22%), Postives = 185/269 (68.77%), Query Frame = 1
Query:   10 SLQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPST-IPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNAL--------------------------APRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVR-AVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTA 732
            S+++PCIAH+DGPDL LLP AL + PGLAYVV+TSPEAAKVFL GW  AG P   +PVACVG ATG AL  GG++PVFTPSKATGETLAAEIP+P +    +                             PRV LYPASAKA N L+ GL +RGFEVRRL+TY+TVPA WD +  AAA   SV AFGSPSAV TWAAR+GV  +         XXXXXXX   A+AACIG TSA ACR+AGW E  IFYPE+PGMEGWA+AVG AL A
Sbjct:   98 SVEVPCIAHQDGPDLPLLPAALAD-PGLAYVVVTSPEAAKVFLAGWAKAGVPGVPVPVACVGKATGDALRAGGVSPVFTPSKATGETLAAEIPLPPSAPADDTXXXXXXXXXXXXXXXXXXXXXXXXXXXGPRV-LYPASAKAQNTLESGLRARGFEVRRLNTYDTVPATWDESAEAAAAGASVAAFGSPSAVKTWAARMGVVAAGVXXXXXXXXXXXXXXXXGALAACIGETSARACREAGWAESAIFYPEKPGMEGWAKAVGQALAA 364          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A835YHW0_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW0_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.260e-61
Identity = 119/238 (50.00%), Postives = 150/238 (63.03%), Query Frame = 1
Query:   13 LQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDAL 726
            +++PCIA  DGPD + LP  L  +    YV++TSPE+AKVFL  W AA  P+ + VACVGTATG AL   G+ P FTPS+A GE LAAEIP+P +   G   APRV LYPAS +A   +Q+GL +RGF V RL+TY+T  A W  A  + A   +V AFGSPSAV  W + +GV                     A AACIG TSA A + AGW ++ IF+PE+PGM GWA+AV +AL
Sbjct:   60 VEVPCIAFTDGPDSAQLPQHLA-SGAYDYVIVTSPESAKVFLQAWDAAERPN-VSVACVGTATGDALRARGLEPAFTPSRAYGEDLAAEIPLPPSAAVGEGGAPRV-LYPASTRAPGTVQEGLEARGFHVVRLNTYDTGAAAWSDADLSNAARAAVAAFGSPSAVKAWVSHMGV-------------------EAAAAACIGVTSAKAAKAAGWADDRIFWPEKPGMPGWAQAVEEAL 275          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: L1JFY6_GUITC (Uroporphyrinogen-III synthase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JFY6_GUITC)

HSP 1 Score: 202 bits (514), Expect = 3.810e-61
Identity = 123/247 (49.80%), Postives = 153/247 (61.94%), Query Frame = 1
Query:   10 SLQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSKTHV 750
            ++++PCIA E G D   LP+AL+E     YVV+TSPEAA VFLD W+ A  PS + VACVGT T QAL++GGI PVF PSKATG+TLA E+P    G  GN      VLYPASAKA  ++Q GL +RGF V RL+TY+TV A W       A S +VVA  SPSAV TWA R+G                     +  AACIG TSA+AC++ G+  E +F+PE PG+ GWA+AV DAL       +
Sbjct:   47 TVELPCIAFEAGIDSDSLPSALKED--WEYVVVTSPEAASVFLDAWRLASQPS-LQVACVGTGTKQALQEGGIEPVFMPSKATGKTLADELP----GPQGNGR----VLYPASAKARTEVQGGLTARGFTVTRLNTYDTVSATWSEQELQMAASAAVVALASPSAVKTWAERLGT--------------------KQYAACIGETSASACKELGF--EHVFWPESPGIPGWAQAVHDALEEMESAEM 260          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A7S0HHZ2_9CRYP (Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHZ2_9CRYP)

HSP 1 Score: 203 bits (516), Expect = 1.240e-60
Identity = 122/247 (49.39%), Postives = 151/247 (61.13%), Query Frame = 1
Query:   10 SLQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSKTHV 750
            ++++PCIA E G D   LP ALQE     YVV+TSPEAA VFLD W+ AG PS +PVACVG  T QAL++GGI PVF PSKATG+TLA E+P P     G       VLYPASAKA  ++Q GL +RGF V RL+TY+TV A W         S +V+A  SPSAV TWA R+G                     +  AACIG TSA AC++ G+  E +F+PE PG+ GWA+AV DAL    +  +
Sbjct:  111 TVELPCIAFEAGTDAETLPKALQEE--WEYVVVTSPEAASVFLDAWREAGEPS-LPVACVGAGTKQALQEGGIEPVFMPSKATGKTLADELPGPRRS--GR------VLYPASAKARTEVQGGLTARGFSVTRLNTYDTVSATWSDKELQMGASAAVIALASPSAVKTWAERLGT--------------------KQYAACIGETSAAACKELGF--EHVFWPESPGILGWAQAVHDALDDIERAEI 324          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A7S4JXA4_9STRA (Uroporphyrinogen-III synthase n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXA4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.040e-57
Identity = 118/245 (48.16%), Postives = 141/245 (57.55%), Query Frame = 1
Query:   16 QIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGT-DGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSKTH 747
            +IPCI H DG D   L   L+E     YV +TSPEAA+V    W+ AG PS   +A VG ATG+AL   GI   F PSKAT +TL  E+P     T +G    P  +LYPASAKA   LQ+GL  RGF+V RLDTY+TVPA W    T  A+   V  F SPSAVN W   +G        +GEG            AACIG TSA  CR  GW E  I+YPE+PG+EGWA AV DAL A ++ +
Sbjct:   94 EIPCIEHADGDDYDRLGPTLKER-SFDYVAVTSPEAARVLASAWEGAGRPSMGKIAAVGKATGEALIALGIEVDFVPSKATAKTLVEELPPSDDATAEGR---PTTLLYPASAKARPTLQNGLEGRGFDVTRLDTYDTVPASWSEDRTDLAREAGVACFASPSAVNAWVENLG-------GEGEGCSGDV------AAACIGETSAQGCRDMGWDEGDIYYPEKPGVEGWANAVADALEAIAEKN 321          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: B8BVT8_THAPS (Uroporphyrinogen-III synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT8_THAPS)

HSP 1 Score: 190 bits (483), Expect = 1.160e-55
Identity = 115/241 (47.72%), Postives = 138/241 (57.26%), Query Frame = 1
Query:   16 QIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFS 738
            +IPCI H DGPD   L   L  T    YV ITSPEAAKV ++ W  AG P    VA VG AT ++L++ GI   F PSKAT  TL  E+P+    T     +   + YPAS KA++ LQ+GL  RGF+V RL+TY+TVPA WD   T  AQS +V  F SPSAV  W       +  A               RA AACIG TSA ACRK  W E  IFYPE+PG++GWA +V DAL   S
Sbjct:  104 EIPCIEHADGPDTDKLVPTLASTQ-FDYVAITSPEAAKVLVNAWIEAGRPQLGKVAAVGKATQESLKEFGIEVAFVPSKATAATLVKELPLSDAATKEGRSS--TLFYPASNKAADTLQNGLEERGFDVMRLNTYDTVPASWDEEQTLLAQSANVACFASPSAVKAWLKNTDGMNKPA---------------RAKAACIGETSAEACRKNQWDESDIFYPEKPGVDGWAVSVADALDYLS 326          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A7S2PU27_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU27_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.470e-55
Identity = 115/243 (47.33%), Postives = 141/243 (58.02%), Query Frame = 1
Query:   16 QIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGT-DGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSK 741
            +IPCIAH DGPD  +L   L  +    YV ITSPEAAKVF   W   G P    VA VG AT +AL+  GI   F PSKAT  TL  E+P     T +G + +   +LYPASAKA + LQ+GL  RGF V RL+TY+TV A W     + A+S +V  F SPSAV  W       D                  RA+AACIG TS  AC+K GW EE IFYPE+PG++GWAE+V +AL  F++
Sbjct:  101 EIPCIAHADGPDSDILGKTLSSSD-FDYVAITSPEAAKVFATAWIDEGRPKVGSVAAVGKATQEALKAYGIDVAFVPSKATAATLVKELPTLEEATNEGRSTS---LLYPASAKAQDTLQNGLEERGFIVTRLNTYDTVTATWTPEEESLAKSTTVACFASPSAVKAWVKNTAQLDCP----------------RALAACIGETSFAACKKNGWKEEDIFYPEKPGIDGWAESVANALQCFAE 323          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A1Z5JNA0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNA0_FISSO)

HSP 1 Score: 186 bits (472), Expect = 2.020e-54
Identity = 113/247 (45.75%), Postives = 139/247 (56.28%), Query Frame = 1
Query:   13 LQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIP--VACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSKTH 747
            +++PCIAH DGPD S L   L+  P   YV ITSPEAA+V    W+     +T P  V  VG AT  AL+  GIT  F PSKAT E L  E+P+P      ++  PRV LYPAS +A   LQDGL  RGF V RL+TY+TV AQW+   T  A  V +  F SPSAV  W                          + +AACIG TSA ACR+ GW EE IFYP++PGMEGW +AV +A  + + T 
Sbjct:   73 VELPCIAHADGPDFSSLQETLETNPW-DYVTITSPEAARVLSSAWQHCTWQTTPPPAVVAVGKATEDALQASGITVTFCPSKATAEVLVQELPLP------SSQQPRV-LYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAQWNEHETNMAAQVQIACFASPSAVKGW------------------LLNTENNHQVLAACIGETSAKACRERGWNEEHIFYPDKPGMEGWVDAVAEAAASLATTQ 293          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A7S2EAC0_TRICV (Uroporphyrinogen-III synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC0_TRICV)

HSP 1 Score: 186 bits (471), Expect = 2.710e-53
Identity = 115/244 (47.13%), Postives = 135/244 (55.33%), Query Frame = 1
Query:   16 QIPCIAHEDGPDLSLLPTALQETPGLA---YVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFS 738
            +IPCIAH DGPD  +L  AL    G     YV +TSPEAA+V    W+AAG P    V  VG AT +AL + GI   F PSKAT +TL  E+P     T    L    +LYPASAKA   L+ GL  RGF V RLDTY+T+PA W       A  V V  F SPSA+  W   +        +  EGG           AACIG TSA  CR  GW E  IFYPE+PG++GWAEAV DAL A +
Sbjct:  147 EIPCIAHADGPDSDMLGPALSGKGGFGAFDYVAVTSPEAARVLAAAWEAAGRPDLGEVVAVGKATEEALLREGIRVGFVPSKATAKTLVEELPESGDATMEGRLT--TLLYPASAKAKKTLEQGLEERGFVVTRLDTYDTIPATWTPEKKNKADLVRVACFASPSAITGWLQNL--------EDTEGGRRGNTI----AAACIGETSAQMCRDMGWDEGNIFYPEKPGVDGWAEAVADALEAVA 376          
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Match: A0A1Z5JYL0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYL0_FISSO)

HSP 1 Score: 183 bits (464), Expect = 3.210e-53
Identity = 112/249 (44.98%), Postives = 134/249 (53.82%), Query Frame = 1
Query:    1 MHPSLQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWKAAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITGTDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAATTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGXXXXXXXVRAVAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSKTH 747
            +HP +++PCIAH DGPD S L   LQ      YV ITSPEAA+V    W+    P+   V  VG AT  AL+  GI   F PSKAT E L  E+P+P          P+V LYPAS +A   LQDGL  RGF V RL+TY+TV A W+   T  A  V +  F SPSAV  W                            +AACIG TSA ACR+ GW EE IFYPE+PGMEGW  AV +A  + + T 
Sbjct:   70 LHP-VELPCIAHADGPDFSSLQETLQNNHW-DYVTITSPEAARVLSSAWQHCTWPTPPAVVAVGKATEDALQAAGIAVAFCPSKATAEVLVQELPLP----SQQQQQPKV-LYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAHWNEHETVQAAQVQIACFASPSAVKGW------------------LLNTENNNAVLAACIGETSAKACRERGWDEEHIFYPEKPGMEGWVNAVAEAAASLATTQ 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig772.15739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS41_ECTSI7.060e-8660.22Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus T... [more]
A0A835YHW0_9STRA3.260e-6150.00Uroporphyrinogen-III synthase n=1 Tax=Tribonema mi... [more]
L1JFY6_GUITC3.810e-6149.80Uroporphyrinogen-III synthase n=2 Tax=Guillardia t... [more]
A0A7S0HHZ2_9CRYP1.240e-6049.39Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi ... [more]
A0A7S4JXA4_9STRA3.040e-5748.16Uroporphyrinogen-III synthase n=3 Tax=Odontella au... [more]
B8BVT8_THAPS1.160e-5547.72Uroporphyrinogen-III synthase n=1 Tax=Thalassiosir... [more]
A0A7S2PU27_9STRA1.470e-5547.33Uroporphyrinogen-III synthase n=1 Tax=Skeletonema ... [more]
A0A1Z5JNA0_FISSO2.020e-5445.75Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]
A0A7S2EAC0_TRICV2.710e-5347.13Uroporphyrinogen-III synthase n=1 Tax=Trieres chin... [more]
A0A1Z5JYL0_FISSO3.210e-5344.98Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig772contigH-paniculata_contig772:206..967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.1
Seed ortholog evalue1.3e-70
Seed eggNOG ortholog2880.D8LS41
Preferred nameHEMD
KEGG rclassRC01861
KEGG koko:K01719
KEGG ReactionR03165
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004852,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.uroporphyrinogen III biosynthetic process
EggNOG OGs2QST9@2759,COG1587@1
Ec32 ortholog descriptionuroporphyrinogen synthase, putative chloroplast precursor
Ec32 orthologEc-12_004890.1
EC4.2.1.75
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size762
Cds size762
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.379365-CDS-H-paniculata_contig772:205..9671622930957.379365-CDS-H-paniculata_contig772:205..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig772 206..967 +
1691481527.2385755-CDS-H-paniculata_contig772:205..9671691481527.2385755-CDS-H-paniculata_contig772:205..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig772 206..967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig772.15739.1prot_H-paniculata_contig772.15739.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig772 206..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig772.15739.1

>prot_H-paniculata_contig772.15739.1 ID=prot_H-paniculata_contig772.15739.1|Name=mRNA_H-paniculata_contig772.15739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
MHPSLQIPCIAHEDGPDLSLLPTALQETPGLAYVVITSPEAAKVFLDGWK
AAGSPSTIPVACVGTATGQALEKGGITPVFTPSKATGETLAAEIPVPITG
TDGNALAPRVVLYPASAKASNQLQDGLASRGFEVRRLDTYNTVPAQWDAA
TTAAAQSVSVVAFGSPSAVNTWAARIGVFDSAAAKQGEGGRGGGGGGVRA
VAACIGNTSATACRKAGWPEECIFYPERPGMEGWAEAVGDALTAFSKTHV
PAK*
back to top

mRNA from alignment at H-paniculata_contig772:206..967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig772.15739.1 ID=mRNA_H-paniculata_contig772.15739.1|Name=mRNA_H-paniculata_contig772.15739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig772:206..967+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCCGTCCTTGCAGATCCCCTGCATTGCACACGAAGACGGGCCCGA CCTGTCGCTACTCCCGACCGCTCTGCAAGAAACCCCAGGGCTTGCCTATG TCGTCATCACGTCCCCAGAAGCAGCCAAGGTTTTTCTAGACGGCTGGAAG GCGGCGGGTAGCCCGTCCACAATACCCGTGGCTTGCGTGGGCACCGCCAC GGGTCAGGCTCTAGAGAAGGGCGGCATCACGCCCGTATTTACCCCGTCCA AAGCTACGGGAGAAACCTTAGCTGCAGAGATTCCAGTCCCGATCACGGGT ACCGACGGAAACGCTCTGGCTCCCCGCGTTGTGTTGTACCCGGCCTCCGC GAAGGCGAGCAACCAGCTGCAGGACGGGCTGGCGTCCAGAGGATTCGAAG TGAGGCGGCTGGATACGTATAACACAGTGCCGGCGCAATGGGATGCCGCG ACCACAGCCGCGGCCCAATCAGTGTCTGTCGTGGCATTCGGGAGCCCGAG CGCAGTCAATACGTGGGCGGCACGCATCGGAGTCTTCGATAGTGCAGCAG CGAAACAGGGAGAGGGAGGAAGGGGAGGGGGCGGTGGAGGGGTGCGAGCG GTGGCTGCATGCATCGGGAACACGAGCGCCACGGCGTGTCGGAAAGCTGG GTGGCCCGAGGAGTGTATTTTTTATCCTGAACGTCCAGGGATGGAAGGTT GGGCGGAGGCTGTCGGCGATGCGTTAACGGCCTTCTCGAAGACGCATGTT CCGGCGAAATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig772:206..967+

>mRNA_H-paniculata_contig772.15739.1 ID=mRNA_H-paniculata_contig772.15739.1|Name=mRNA_H-paniculata_contig772.15739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig772:206..967+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCCGTCCTTGCAGATCCCCTGCATTGCACACGAAGACGGGCCCGA
CCTGTCGCTACTCCCGACCGCTCTGCAAGAAACCCCAGGGCTTGCCTATG
TCGTCATCACGTCCCCAGAAGCAGCCAAGGTTTTTCTAGACGGCTGGAAG
GCGGCGGGTAGCCCGTCCACAATACCCGTGGCTTGCGTGGGCACCGCCAC
GGGTCAGGCTCTAGAGAAGGGCGGCATCACGCCCGTATTTACCCCGTCCA
AAGCTACGGGAGAAACCTTAGCTGCAGAGATTCCAGTCCCGATCACGGGT
ACCGACGGAAACGCTCTGGCTCCCCGCGTTGTGTTGTACCCGGCCTCCGC
GAAGGCGAGCAACCAGCTGCAGGACGGGCTGGCGTCCAGAGGATTCGAAG
TGAGGCGGCTGGATACGTATAACACAGTGCCGGCGCAATGGGATGCCGCG
ACCACAGCCGCGGCCCAATCAGTGTCTGTCGTGGCATTCGGGAGCCCGAG
CGCAGTCAATACGTGGGCGGCACGCATCGGAGTCTTCGATAGTGCAGCAG
CGAAACAGGGAGAGGGAGGAAGGGGAGGGGGCGGTGGAGGGGTGCGAGCG
GTGGCTGCATGCATCGGGAACACGAGCGCCACGGCGTGTCGGAAAGCTGG
GTGGCCCGAGGAGTGTATTTTTTATCCTGAACGTCCAGGGATGGAAGGTT
GGGCGGAGGCTGTCGGCGATGCGTTAACGGCCTTCTCGAAGACGCATGTT
CCGGCGAAATAGATGCACCCGTCCTTGCAGATCCCCTGCATTGCACACGA
AGACGGGCCCGACCTGTCGCTACTCCCGACCGCTCTGCAAGAAACCCCAG
GGCTTGCCTATGTCGTCATCACGTCCCCAGAAGCAGCCAAGGTTTTTCTA
GACGGCTGGAAGGCGGCGGGTAGCCCGTCCACAATACCCGTGGCTTGCGT
GGGCACCGCCACGGGTCAGGCTCTAGAGAAGGGCGGCATCACGCCCGTAT
TTACCCCGTCCAAAGCTACGGGAGAAACCTTAGCTGCAGAGATTCCAGTC
CCGATCACGGGTACCGACGGAAACGCTCTGGCTCCCCGCGTTGTGTTGTA
CCCGGCCTCCGCGAAGGCGAGCAACCAGCTGCAGGACGGGCTGGCGTCCA
GAGGATTCGAAGTGAGGCGGCTGGATACGTATAACACAGTGCCGGCGCAA
TGGGATGCCGCGACCACAGCCGCGGCCCAATCAGTGTCTGTCGTGGCATT
CGGGAGCCCGAGCGCAGTCAATACGTGGGCGGCACGCATCGGAGTCTTCG
ATAGTGCAGCAGCGAAACAGGGAGAGGGAGGAAGGGGAGGGGGCGGTGGA
GGGGTGCGAGCGGTGGCTGCATGCATCGGGAACACGAGCGCCACGGCGTG
TCGGAAAGCTGGGTGGCCCGAGGAGTGTATTTTTTATCCTGAACGTCCAG
GGATGGAAGGTTGGGCGGAGGCTGTCGGCGATGCGTTAACGGCCTTCTCG
AAGACGCATGTTCCGGCGAAATAG
back to top