mRNA_H-paniculata_contig77109.15731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY) HSP 1 Score: 142 bits (359), Expect = 3.440e-36 Identity = 76/158 (48.10%), Postives = 96/158 (60.76%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
GGEYT K F +FC E+ I + +A YT QQ GVAER R+I MAR+ + + R + AEAVR AVY LNR PT+ TP E G+ P + L +FGC AY Q R KLDD+ F+GYDE S +YR+YNP K +SR+V FDE D+
Sbjct: 414 GGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 571
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY) HSP 1 Score: 142 bits (359), Expect = 3.470e-36 Identity = 76/158 (48.10%), Postives = 96/158 (60.76%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
GGEYT K F +FC E+ I + +A YT QQ GVAER R+I MAR+ + + R + AEAVR AVY LNR PT+ TP E G+ P + L +FGC AY Q R KLDD+ F+GYDE S +YR+YNP K +SR+V FDE D+
Sbjct: 356 GGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 513
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 141 bits (355), Expect = 1.210e-35 Identity = 75/158 (47.47%), Postives = 95/158 (60.13%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
GGEYT K F +FC E+ I + + YT QQ GVAER R+I MAR+ + + R + AEAVR AVY LNR PT+ TP E G+ P + L +FGC AY Q R KLDD+ F+GYDE S +YR+YNP K +SR+V FDE D+
Sbjct: 1382 GGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 139 bits (350), Expect = 5.480e-35 Identity = 74/158 (46.84%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
GGEYT K F +FC E+ I + +A YT QQ GVAER R+I MAR+ + + R + AEAVR AVY LNR PT+ TP E G+ P + +FGC AY R KLDD+ F+GYDE S +YR+YNP K +SR+V FDE D+
Sbjct: 461 GGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 138 bits (348), Expect = 1.030e-34 Identity = 70/155 (45.16%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDE 465
GGEY F+ +C EN IK++ +AAYT QQ G+AER RSI MAR M+ ++ RR+ EAV+ AV+ LNR+P+ TP E P ++ + VFGC AY + ++R KLD+K+ F+G + S +YR+YNPE K +SR+VRFDE
Sbjct: 570 GGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 137 bits (345), Expect = 2.520e-34 Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEE 468
GGE+T ++F+ FC ++ I++ + + QQ GVAER R+I MAR+ + + N+ + + AEAV AVY LNR+PTR G TP E G P + L VFG AY + R KLDDK+ A F+GYD NS Y++YNP+ + +SR+V FDEE
Sbjct: 246 GGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 129 bits (325), Expect = 3.090e-34 Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEE 468
GGE+ QF FC E ++ + + AYT QQ GV ER R++ MAR+ +I ++ +++ AEAV +AVY LNR PT+ TP E G+ P +D +FGC YV +Q+R KL++K G FLGY S Y +N + + SR+V+FDE+
Sbjct: 61 GGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU) HSP 1 Score: 137 bits (344), Expect = 3.370e-34 Identity = 68/155 (43.87%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDE 465
GGE+T +F ++C N IK+E +A YT QQ GVAER R+I MAR+ + ++ + AEA+ +AV+ LNR+PT+ TP+E H PK+D +FGCTAY Q+R K D+K F+GY + S +YR+ +P KS +SR+V FDE
Sbjct: 254 GGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU) HSP 1 Score: 137 bits (344), Expect = 3.510e-34 Identity = 68/155 (43.87%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDE 465
GGE+T +F ++C N IK+E +A YT QQ GVAER R+I MAR+ + ++ + AEA+ +AV+ LNR+PT+ TP+E H PK+D +FGCTAY Q+R K D+K F+GY + S +YR+ +P KS +SR+V FDE
Sbjct: 491 GGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A540MM95_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MM95_MALBA) HSP 1 Score: 133 bits (335), Expect = 1.080e-33 Identity = 69/157 (43.95%), Postives = 96/157 (61.15%), Query Frame = 1
Query: 1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEED 471
GGE+T K+F++FC N I++ + + QQ GVAER R+I M R+ + + + + AEAV AVY NR+PTR G TP E G P + L VFG A+V ++R KLDDK+ F+GYD NS Y++YNP N+ +SR+V FDEE+
Sbjct: 6 GGEFTSKEFQEFCEANGIRRSLTVPRSPQQNGVAERKNRTILDMVRSMLKSKRLPKEMWAEAVACAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDERRAKLDDKSEKFIFIGYDSNSKGYKLYNPNNRKMVISRDVTFDEEE 162 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig77109.15731.1 >prot_H-paniculata_contig77109.15731.1 ID=prot_H-paniculata_contig77109.15731.1|Name=mRNA_H-paniculata_contig77109.15731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp MFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEback to top mRNA from alignment at H-paniculata_contig77109:28..543+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig77109.15731.1 ID=mRNA_H-paniculata_contig77109.15731.1|Name=mRNA_H-paniculata_contig77109.15731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig77109:28..543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig77109:28..543+ >mRNA_H-paniculata_contig77109.15731.1 ID=mRNA_H-paniculata_contig77109.15731.1|Name=mRNA_H-paniculata_contig77109.15731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig77109:28..543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |