mRNA_H-paniculata_contig77109.15731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77109.15731.1
Unique NamemRNA_H-paniculata_contig77109.15731.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 142 bits (359), Expect = 3.440e-36
Identity = 76/158 (48.10%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
            GGEYT K F +FC E+ I  + +A YT QQ GVAER  R+I  MAR+ +    + R + AEAVR AVY LNR PT+     TP E   G+ P +  L +FGC AY     Q R KLDD+     F+GYDE S +YR+YNP  K   +SR+V FDE D+
Sbjct:  414 GGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 571          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 142 bits (359), Expect = 3.470e-36
Identity = 76/158 (48.10%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
            GGEYT K F +FC E+ I  + +A YT QQ GVAER  R+I  MAR+ +    + R + AEAVR AVY LNR PT+     TP E   G+ P +  L +FGC AY     Q R KLDD+     F+GYDE S +YR+YNP  K   +SR+V FDE D+
Sbjct:  356 GGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 513          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 141 bits (355), Expect = 1.210e-35
Identity = 75/158 (47.47%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
            GGEYT K F +FC E+ I  + +  YT QQ GVAER  R+I  MAR+ +    + R + AEAVR AVY LNR PT+     TP E   G+ P +  L +FGC AY     Q R KLDD+     F+GYDE S +YR+YNP  K   +SR+V FDE D+
Sbjct: 1382 GGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 139 bits (350), Expect = 5.480e-35
Identity = 74/158 (46.84%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEEDF 474
            GGEYT K F +FC E+ I  + +A YT QQ GVAER  R+I  MAR+ +    + R + AEAVR AVY LNR PT+     TP E   G+ P +    +FGC AY       R KLDD+     F+GYDE S +YR+YNP  K   +SR+V FDE D+
Sbjct:  461 GGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 138 bits (348), Expect = 1.030e-34
Identity = 70/155 (45.16%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDE 465
            GGEY    F+ +C EN IK++ +AAYT QQ G+AER  RSI  MAR  M+  ++ RR+  EAV+ AV+ LNR+P+      TP E      P ++ + VFGC AY +   ++R KLD+K+    F+G  + S +YR+YNPE K   +SR+VRFDE
Sbjct:  570 GGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 137 bits (345), Expect = 2.520e-34
Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEE 468
            GGE+T ++F+ FC ++ I++  +   + QQ GVAER  R+I  MAR+ + + N+ + + AEAV  AVY LNR+PTR   G TP E   G  P +  L VFG  AY     + R KLDDK+ A  F+GYD NS  Y++YNP+  +  +SR+V FDEE
Sbjct:  246 GGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 129 bits (325), Expect = 3.090e-34
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEE 468
            GGE+   QF  FC E  ++ + + AYT QQ GV ER  R++  MAR+ +I  ++ +++ AEAV +AVY LNR PT+     TP E   G+ P +D   +FGC  YV   +Q+R KL++K   G FLGY   S  Y  +N + +    SR+V+FDE+
Sbjct:   61 GGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 137 bits (344), Expect = 3.370e-34
Identity = 68/155 (43.87%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDE 465
            GGE+T  +F ++C  N IK+E +A YT QQ GVAER  R+I  MAR+ +   ++   + AEA+ +AV+ LNR+PT+     TP+E  H   PK+D   +FGCTAY     Q+R K D+K     F+GY + S +YR+ +P  KS  +SR+V FDE
Sbjct:  254 GGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 137 bits (344), Expect = 3.510e-34
Identity = 68/155 (43.87%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDE 465
            GGE+T  +F ++C  N IK+E +A YT QQ GVAER  R+I  MAR+ +   ++   + AEA+ +AV+ LNR+PT+     TP+E  H   PK+D   +FGCTAY     Q+R K D+K     F+GY + S +YR+ +P  KS  +SR+V FDE
Sbjct:  491 GGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645          
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Match: A0A540MM95_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MM95_MALBA)

HSP 1 Score: 133 bits (335), Expect = 1.080e-33
Identity = 69/157 (43.95%), Postives = 96/157 (61.15%), Query Frame = 1
Query:    1 GGEYTGKQFRQFCAENAIKQEFSAAYTSQQIGVAERSWRSIFGMARTSMITANMGRRY*AEAVRSAVYCLNRAPTRPHNGGTPYEERHGETPKLDLLGVFGCTAYVMFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEED 471
            GGE+T K+F++FC  N I++  +   + QQ GVAER  R+I  M R+ + +  + +   AEAV  AVY  NR+PTR   G TP E   G  P +  L VFG  A+V    ++R KLDDK+    F+GYD NS  Y++YNP N+   +SR+V FDEE+
Sbjct:    6 GGEFTSKEFQEFCEANGIRRSLTVPRSPQQNGVAERKNRTILDMVRSMLKSKRLPKEMWAEAVACAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDERRAKLDDKSEKFIFIGYDSNSKGYKLYNPNNRKMVISRDVTFDEEE 162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77109.15731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3C4D2_HIBSY3.440e-3648.10FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY3.470e-3648.10Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A2WXP0_HIBSY1.210e-3547.47Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A2WSU7_HIBSY5.480e-3546.84Integrase catalytic domain-containing protein n=2 ... [more]
A0A6D2IM54_9BRAS1.030e-3445.16Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
UPI001F0044642.520e-3444.87DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A2I0WJT9_9ASPA3.090e-3441.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1QWW3_PRUDU3.370e-3443.87Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R9H3_PRUDU3.510e-3443.87Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A540MM95_MALBA1.080e-3343.95Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77109contigH-paniculata_contig77109:28..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.2570865-UTR-H-paniculata_contig77109:27..3451622930956.2570865-UTR-H-paniculata_contig77109:27..345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig77109 28..345 +
1691481526.758647-UTR-H-paniculata_contig77109:27..3451691481526.758647-UTR-H-paniculata_contig77109:27..345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig77109 28..345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.2832687-CDS-H-paniculata_contig77109:345..5431622930956.2832687-CDS-H-paniculata_contig77109:345..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77109 346..543 +
1691481526.7692525-CDS-H-paniculata_contig77109:345..5431691481526.7692525-CDS-H-paniculata_contig77109:345..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77109 346..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77109.15731.1prot_H-paniculata_contig77109.15731.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77109 346..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77109.15731.1

>prot_H-paniculata_contig77109.15731.1 ID=prot_H-paniculata_contig77109.15731.1|Name=mRNA_H-paniculata_contig77109.15731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MFQRQQRCKLDDKTWAGSFLGYDENSPSYRIYNPENKSAQLSRNVRFDEE
DFVTGHRGQQEHDGT*
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mRNA from alignment at H-paniculata_contig77109:28..543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77109.15731.1 ID=mRNA_H-paniculata_contig77109.15731.1|Name=mRNA_H-paniculata_contig77109.15731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig77109:28..543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGAATATACTGGGAAGCAATTTAGGCAATTCTGCGCGGAAAATGC CATCAAGCAGGAGTTCTCTGCCGCCTACACATCACAACAAATCGGTGTGG CGGAGCGCAGCTGGCGCAGCATTTTCGGGATGGCAAGAACCAGCATGATC ACCGCCAACATGGGTCGCCGATATTGAGCGGAAGCGGTGCGTTCGGCAGT GTACTGCCTAAATCGCGCCCCGACGCGACCGCACAACGGAGGAACGCCGT ACGAAGAACGGCACGGCGAGACACCAAAGTTGGACCTCCTTGGTGTCTTC GGCTGCACGGCGTATGTTATGTTCCAGCGGCAGCAGAGATGCAAGCTCGA CGACAAAACATGGGCGGGGAGTTTTCTGGGGTACGACGAGAACAGCCCGA GTTATCGCATATATAATCCGGAAAACAAGAGCGCCCAGTTGAGCAGGAAC GTGAGATTTGACGAAGAGGACTTCGTAACGGGCCATCGCGGACAGCAGGA GCACGACGGGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig77109:28..543+

>mRNA_H-paniculata_contig77109.15731.1 ID=mRNA_H-paniculata_contig77109.15731.1|Name=mRNA_H-paniculata_contig77109.15731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig77109:28..543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGCGGCAGCAGAGATGCAAGCTCGACGACAAAACATGGGCGGG
GAGTTTTCTGGGGTACGACGAGAACAGCCCGAGTTATCGCATATATAATC
CGGAAAACAAGAGCGCCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAG
GACTTCGTAACGGGCCATCGCGGACAGCAGGAGCACGACGGGACGTGAAT
GTTCCAGCGGCAGCAGAGATGCAAGCTCGACGACAAAACATGGGCGGGGA
GTTTTCTGGGGTACGACGAGAACAGCCCGAGTTATCGCATATATAATCCG
GAAAACAAGAGCGCCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAGGA
CTTCGTAACGGGCCATCGCGGACAGCAGGAGCACGACGGGACGTGA
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