mRNA_H-paniculata_contig77089.15725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77089.15725.1
Unique NamemRNA_H-paniculata_contig77089.15725.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.570e-25
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEV--ASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQL-KLCAIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            P   TV G+  GEV+HFD+LH+GKS    A  +D  DGY Y+LV+ DDLS F W+ P   CTA  T + L   C   G P  WVSD A HFKN V+     ALG+  +F+
Sbjct:   27 PFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFT 136          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.910e-25
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEV--ASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQL-KLCAIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            P   TV G+  GEV+HFD+LH+GKS    A  +D  DGY Y+LV+ DDLS F W+ P   CTA  T + L   C   G P  WVSD A HFKN V+     ALG+  +F+
Sbjct:  474 PFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFT 583          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.240e-25
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEV--ASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQL-KLCAIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            P   TV G+  GEV+HFD+LH+GKS    A  +D  DGY Y+LV+ DDLS F W+ P   CTA  T + L   C   G P  WVSD A HFKN V+     ALG+  +F+
Sbjct: 1250 PFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFT 1359          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.430e-24
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEVAS--AVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLKL-CAIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            PL  TV G   GEVVHFD+L++G S       +D  +G+KYILV+ DD+S +VWL P  ACTA  T + L   C I G P  WVSD A HFKN ++     ALG+   FS
Sbjct: 1352 PLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFS 1461          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: UPI001E1DBC25 (uncharacterized protein LOC123544734 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBC25)

HSP 1 Score: 91.3 bits (225), Expect = 2.270e-19
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEVASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLKLC-AIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            PL   +      EV+HFD+L++G S V        GYKY+L+I+DDLSG++WL PAKA  +  TV+ L L  A FG    WVSD   HFKN+V+     AL   H F+
Sbjct:   42 PLGQALHASLPNEVIHFDYLYMGPSGV--------GYKYLLLIKDDLSGYLWLVPAKAADSASTVDALTLWFATFGVAHIWVSDQGSHFKNQVMGSLRKALRAQHHFT 141          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.730e-18
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEVAS--AVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLKL-CAIFGAPRTWVSDNA 255
            PL  T  G   GEVV FD+L++G S +    ++D  DG+KYILV+ DD+S +VWL P  ACTA  T + L   C   G P  WVSD A
Sbjct:   27 PLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A080ZI93_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A080ZI93_PHYPR)

HSP 1 Score: 87.4 bits (215), Expect = 7.570e-18
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEVASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLK-LCAIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            PL   V  ++  EV+H+D+L++GKS+           +Y+LVI+DD S FVWL P  A TA+ T + L    A FG  R WVSD   HFKN+V+     A+G HH F+
Sbjct: 1166 PLGEAVHADKPNEVIHWDYLYMGKSD--------SDLQYVLVIKDDASKFVWLMPTDAATADNTFDFLMDWFACFGVCRFWVSDQGTHFKNKVIEDMQHAMGSHHHFT 1265          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6A5AI88_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AI88_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.650e-15
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEVASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLKLC-AIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            PL  T+  E+  E++HFD+L        S   T  G K +LV++DD+SGFV L+  ++  A  T ++L +    FG   TWVSD   HFKN V+ K    +G HH  +
Sbjct:   95 PLGSTLHAEKPNELIHFDWL--------SMPMTKSGQKQVLVVKDDMSGFVQLSATESADAAATAQRLMMWFTTFGCVDTWVSDGGSHFKNEVIEKVRRLVGAHHHIT 194          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: UPI001E1D317D (uncharacterized protein LOC123544435 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D317D)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-14
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   37 EVVHFDFLHIGKSEVASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLKLC-AIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            EV+HFDFL +G +          G KY+L+I+DDLSG+VWL P+KA      V+ L L  A FG    WVSD   HFKN+V+      L   H F+
Sbjct:   39 EVIHFDFLFMGPAST--------GEKYLLIIKDDLSGYVWLIPSKAADTATVVDALTLWFASFGVALIWVSDRGSHFKNKVMDGVRRVLKSQHHFT 126          
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Match: A0A6G0WKP4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKP4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.190e-14
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 PLAGTVFGEEAGEVVHFDFLHIGKSEVASAVDTLDGYKYILVIEDDLSGFVWLAPAKACTANFTVEQLK-LCAIFGAPRTWVSDNAEHFKNRVLRKTAVALGIHHQFS 321
            PL   +  E+  E++HFD+L +  S          G K++LVI+DD+SGFV L PA++  A  T   L     ++G    WV+D   HFKN V+ K    +G+HH  +
Sbjct:  334 PLGSAMHAEKPNELIHFDWLSMPMST--------SGLKHVLVIKDDMSGFVHLFPAESADATSTATALMGWFTLYGCVEKWVTDGGSHFKNEVVEKIRKMVGVHHHIT 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77089.15725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE2.570e-2547.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE6.910e-2547.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE7.240e-2547.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE3.430e-2448.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E1DBC252.270e-1944.44uncharacterized protein LOC123544734 n=1 Tax=Merce... [more]
A0A6H5J9M0_9PHAE3.730e-1847.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A080ZI93_PHYPR7.570e-1842.59Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6A5AI88_9STRA2.650e-1537.96Integrase catalytic domain-containing protein (Fra... [more]
UPI001E1D317D1.040e-1443.75uncharacterized protein LOC123544435 n=1 Tax=Merce... [more]
A0A6G0WKP4_9STRA8.190e-1436.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77089contigH-paniculata_contig77089:31..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog4792.ETI57041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.481753-CDS-H-paniculata_contig77089:30..3511622930955.481753-CDS-H-paniculata_contig77089:30..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77089 31..351 +
1691481526.4312146-CDS-H-paniculata_contig77089:30..3511691481526.4312146-CDS-H-paniculata_contig77089:30..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77089 31..351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77089.15725.1prot_H-paniculata_contig77089.15725.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77089 31..351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77089.15725.1

>prot_H-paniculata_contig77089.15725.1 ID=prot_H-paniculata_contig77089.15725.1|Name=mRNA_H-paniculata_contig77089.15725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
PLAGTVFGEEAGEVVHFDFLHIGKSEVASAVDTLDGYKYILVIEDDLSGF
VWLAPAKACTANFTVEQLKLCAIFGAPRTWVSDNAEHFKNRVLRKTAVAL
GIHHQFS
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mRNA from alignment at H-paniculata_contig77089:31..352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77089.15725.1 ID=mRNA_H-paniculata_contig77089.15725.1|Name=mRNA_H-paniculata_contig77089.15725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=322bp|location=Sequence derived from alignment at H-paniculata_contig77089:31..352+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTTGGCAGGAACGGTGTTTGGCGAGGAGGCAGGAGAAGTGGTACACTT CGATTTCTTGCACATCGGAAAGAGCGAAGTTGCATCGGCAGTGGATACGT TGGACGGATACAAGTACATCCTCGTAATTGAGGACGACCTTAGCGGATTC GTGTGGTTGGCACCGGCGAAGGCGTGTACCGCGAATTTTACGGTCGAACA GCTGAAGTTGTGCGCGATTTTTGGTGCGCCACGCACGTGGGTCAGCGACA ATGCGGAGCATTTCAAGAATCGTGTGCTGCGGAAGACCGCGGTGGCGCTA GGGATTCACCATCAATTCTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig77089:31..352+

>mRNA_H-paniculata_contig77089.15725.1 ID=mRNA_H-paniculata_contig77089.15725.1|Name=mRNA_H-paniculata_contig77089.15725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig77089:31..352+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTTGGCAGGAACGGTGTTTGGCGAGGAGGCAGGAGAAGTGGTACACTT
CGATTTCTTGCACATCGGAAAGAGCGAAGTTGCATCGGCAGTGGATACGT
TGGACGGATACAAGTACATCCTCGTAATTGAGGACGACCTTAGCGGATTC
GTGTGGTTGGCACCGGCGAAGGCGTGTACCGCGAATTTTACGGTCGAACA
GCTGAAGTTGTGCGCGATTTTTGGTGCGCCACGCACGTGGGTCAGCGACA
ATGCGGAGCATTTCAAGAATCGTGTGCTGCGGAAGACCGCGGTGGCGCTA
GGGATTCACCATCAATTCTCGCCGTTGGCAGGAACGGTGTTTGGCGAGGA
GGCAGGAGAAGTGGTACACTTCGATTTCTTGCACATCGGAAAGAGCGAAG
TTGCATCGGCAGTGGATACGTTGGACGGATACAAGTACATCCTCGTAATT
GAGGACGACCTTAGCGGATTCGTGTGGTTGGCACCGGCGAAGGCGTGTAC
CGCGAATTTTACGGTCGAACAGCTGAAGTTGTGCGCGATTTTTGGTGCGC
CACGCACGTGGGTCAGCGACAATGCGGAGCATTTCAAGAATCGTGTGCTG
CGGAAGACCGCGGTGGCGCTAGGGATTCACCATCAATTCTCG
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