mRNA_H-paniculata_contig7704.15717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7704.15717.1
Unique NamemRNA_H-paniculata_contig7704.15717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7704.15717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7704contigH-paniculata_contig7704:5471..6556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1088
Cds size1086
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.6841524-CDS-H-paniculata_contig7704:5470..65561622930954.6841524-CDS-H-paniculata_contig7704:5470..6556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7704 5471..6556 +
1691481526.101237-CDS-H-paniculata_contig7704:5470..65561691481526.101237-CDS-H-paniculata_contig7704:5470..6556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7704 5471..6556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7704.15717.1prot_H-paniculata_contig7704.15717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7704 5471..6556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7704.15717.1

>prot_H-paniculata_contig7704.15717.1 ID=prot_H-paniculata_contig7704.15717.1|Name=mRNA_H-paniculata_contig7704.15717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
TRYAPDASGILVPHMIESGDAVDVNNRGDSRTKPLPDQQESDAAVASSYR
LGRRTPLSKTSVHDISRRNLATLEGLTATTNTERVPTTRESAPVSIDFRD
SRHISTRRKSSNHAPYREANEDTITESSNRMMLVSSPPGPPLATTAPPDR
RRERGLSALRLVADPNPSIAAFGLSRGGWSSSRRKSTSSSQMKNVGSTTG
SRSPAGHRSNAGGGGGGGGSSLVSSRSAFCMPVASKVIPGRSDGARISFG
DTPSSRQTSSEEAFTFGDSWPPSAFPQSPDRPRTTTTAPPKPTKASAAAA
GVVIPLAATSSSTSVGTPPGIEGSGHFASSSEIITTCSARPPPLVVLGDD
STTKPNTPGSPS
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mRNA from alignment at H-paniculata_contig7704:5471..6556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7704.15717.1 ID=mRNA_H-paniculata_contig7704.15717.1|Name=mRNA_H-paniculata_contig7704.15717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig7704:5471..6556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAGGTACGCACCCGACGCATCGGGTATCCTTGTACCGCACATGATCGA
AAGCGGTGACGCTGTGGACGTCAATAATCGTGGCGATAGCCGCACCAAAC
CGCTGCCGGATCAACAAGAGAGTGACGCTGCAGTTGCATCTTCTTACCGT
CTAGGTCGCAGGACGCCACTTTCAAAAACGAGCGTTCACGATATATCACG
TCGCAACTTAGCGACCCTCGAAGGCCTCACTGCGACTACCAACACGGAGC
GGGTGCCCACCACAAGAGAGAGTGCCCCAGTTAGTATCGACTTTAGAGAT
AGTCGTCATATCAGTACCCGCCGCAAGTCATCAAACCATGCGCCATACCG
CGAGGCTAATGAGGACACGATCACCGAATCCTCGAACCGGATGATGTTAG
TATCCTCCCCGCCAGGACCGCCCTTGGCTACAACGGCGCCCCCAGACCGC
CGTCGCGAACGAGGGCTATCGGCTCTTCGCTTGGTTGCAGATCCAAATCC
CTCGATAGCTGCCTTCGGCTTGAGTCGCGGCGGGTGGTCATCATCCAGAA
GGAAATCCACATCTTCATCACAGATGAAAAATGTTGGTAGCACTACCGGT
AGCAGGAGCCCGGCTGGGCACCGCAGCAATGCGGGCGGCGGTGGCGGCGG
TGGCGGCAGCAGCTTGGTATCGTCGAGGTCGGCGTTTTGTATGCCTGTCG
CAAGCAAAGTCATCCCTGGCCGCAGTGACGGTGCCAGAATAAGCTTTGGC
GATACACCGTCATCCAGGCAGACCTCCAGCGAAGAAGCCTTCACTTTTGG
TGACTCTTGGCCTCCTTCGGCTTTTCCCCAGTCGCCCGATCGGCCTCGGA
CGACAACGACAGCACCGCCAAAGCCAACAAAGGCGTCGGCAGCAGCAGCT
GGTGTGGTGATCCCACTAGCGGCGACTTCGAGTAGCACCAGTGTAGGTAC
TCCACCTGGAATCGAAGGCAGCGGGCACTTTGCGTCCTCTTCGGAGATCA
TCACCACGTGCTCCGCTCGTCCCCCACCCCTTGTAGTGTTGGGTGATGAC
AGTACCACCAAGCCAAATACCCCTGGCTCTCCTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7704:5471..6556+

>mRNA_H-paniculata_contig7704.15717.1 ID=mRNA_H-paniculata_contig7704.15717.1|Name=mRNA_H-paniculata_contig7704.15717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig7704:5471..6556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAGGTACGCACCCGACGCATCGGGTATCCTTGTACCGCACATGATCGA
AAGCGGTGACGCTGTGGACGTCAATAATCGTGGCGATAGCCGCACCAAAC
CGCTGCCGGATCAACAAGAGAGTGACGCTGCAGTTGCATCTTCTTACCGT
CTAGGTCGCAGGACGCCACTTTCAAAAACGAGCGTTCACGATATATCACG
TCGCAACTTAGCGACCCTCGAAGGCCTCACTGCGACTACCAACACGGAGC
GGGTGCCCACCACAAGAGAGAGTGCCCCAGTTAGTATCGACTTTAGAGAT
AGTCGTCATATCAGTACCCGCCGCAAGTCATCAAACCATGCGCCATACCG
CGAGGCTAATGAGGACACGATCACCGAATCCTCGAACCGGATGATGTTAG
TATCCTCCCCGCCAGGACCGCCCTTGGCTACAACGGCGCCCCCAGACCGC
CGTCGCGAACGAGGGCTATCGGCTCTTCGCTTGGTTGCAGATCCAAATCC
CTCGATAGCTGCCTTCGGCTTGAGTCGCGGCGGGTGGTCATCATCCAGAA
GGAAATCCACATCTTCATCACAGATGAAAAATGTTGGTAGCACTACCGGT
AGCAGGAGCCCGGCTGGGCACCGCAGCAATGCGGGCGGCGGTGGCGGCGG
TGGCGGCAGCAGCTTGGTATCGTCGAGGTCGGCGTTTTGTATGCCTGTCG
CAAGCAAAGTCATCCCTGGCCGCAGTGACGGTGCCAGAATAAGCTTTGGC
GATACACCGTCATCCAGGCAGACCTCCAGCGAAGAAGCCTTCACTTTTGG
TGACTCTTGGCCTCCTTCGGCTTTTCCCCAGTCGCCCGATCGGCCTCGGA
CGACAACGACAGCACCGCCAAAGCCAACAAAGGCGTCGGCAGCAGCAGCT
GGTGTGGTGATCCCACTAGCGGCGACTTCGAGTAGCACCAGTGTAGGTAC
TCCACCTGGAATCGAAGGCAGCGGGCACTTTGCGTCCTCTTCGGAGATCA
TCACCACGTGCTCCGCTCGTCCCCCACCCCTTGTAGTGTTGGGTGATGAC
AGTACCACCAAGCCAAATACCCCTGGCTCTCCTTCCACAAGGTACGCACC
CGACGCATCGGGTATCCTTGTACCGCACATGATCGAAAGCGGTGACGCTG
TGGACGTCAATAATCGTGGCGATAGCCGCACCAAACCGCTGCCGGATCAA
CAAGAGAGTGACGCTGCAGTTGCATCTTCTTACCGTCTAGGTCGCAGGAC
GCCACTTTCAAAAACGAGCGTTCACGATATATCACGTCGCAACTTAGCGA
CCCTCGAAGGCCTCACTGCGACTACCAACACGGAGCGGGTGCCCACCACA
AGAGAGAGTGCCCCAGTTAGTATCGACTTTAGAGATAGTCGTCATATCAG
TACCCGCCGCAAGTCATCAAACCATGCGCCATACCGCGAGGCTAATGAGG
ACACGATCACCGAATCCTCGAACCGGATGATGTTAGTATCCTCCCCGCCA
GGACCGCCCTTGGCTACAACGGCGCCCCCAGACCGCCGTCGCGAACGAGG
GCTATCGGCTCTTCGCTTGGTTGCAGATCCAAATCCCTCGATAGCTGCCT
TCGGCTTGAGTCGCGGCGGGTGGTCATCATCCAGAAGGAAATCCACATCT
TCATCACAGATGAAAAATGTTGGTAGCACTACCGGTAGCAGGAGCCCGGC
TGGGCACCGCAGCAATGCGGGCGGCGGTGGCGGCGGTGGCGGCAGCAGCT
TGGTATCGTCGAGGTCGGCGTTTTGTATGCCTGTCGCAAGCAAAGTCATC
CCTGGCCGCAGTGACGGTGCCAGAATAAGCTTTGGCGATACACCGTCATC
CAGGCAGACCTCCAGCGAAGAAGCCTTCACTTTTGGTGACTCTTGGCCTC
CTTCGGCTTTTCCCCAGTCGCCCGATCGGCCTCGGACGACAACGACAGCA
CCGCCAAAGCCAACAAAGGCGTCGGCAGCAGCAGCTGGTGTGGTGATCCC
ACTAGCGGCGACTTCGAGTAGCACCAGTGTAGGTACTCCACCTGGAATCG
AAGGCAGCGGGCACTTTGCGTCCTCTTCGGAGATCATCACCACGTGCTCC
GCTCGTCCCCCACCCCTTGTAGTGTTGGGTGATGACAGTACCACCAAGCC
AAATACCCCTGGCTCTCCTTCC
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