mRNA_H-paniculata_contig770.15713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig770.15713.1
Unique NamemRNA_H-paniculata_contig770.15713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig770.15713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig770contigH-paniculata_contig770:11252..11930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size679
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig770.15713.1prot_H-paniculata_contig770.15713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig770 11404..11784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.1425145-UTR-H-paniculata_contig770:11251..114031622930954.1425145-UTR-H-paniculata_contig770:11251..11403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig770 11252..11403 +
1691481525.9038796-UTR-H-paniculata_contig770:11251..114031691481525.9038796-UTR-H-paniculata_contig770:11251..11403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig770 11252..11403 +
1622930954.17702-UTR-H-paniculata_contig770:11784..119301622930954.17702-UTR-H-paniculata_contig770:11784..11930Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig770 11785..11930 +
1691481525.9236188-UTR-H-paniculata_contig770:11784..119301691481525.9236188-UTR-H-paniculata_contig770:11784..11930Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig770 11785..11930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.1585438-CDS-H-paniculata_contig770:11403..117841622930954.1585438-CDS-H-paniculata_contig770:11403..11784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig770 11404..11784 +
1691481525.9130983-CDS-H-paniculata_contig770:11403..117841691481525.9130983-CDS-H-paniculata_contig770:11403..11784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig770 11404..11784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig770.15713.1

>prot_H-paniculata_contig770.15713.1 ID=prot_H-paniculata_contig770.15713.1|Name=mRNA_H-paniculata_contig770.15713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MVCSAASSSPLAPDHLRLGDALAARHSPPPGPSLFSPPPSSSQSFVCKAQ
TEKNKTSKGAGIPPYHTTTDQLDLRVCCPRLGASLFTAAAGRKTIAAKRT
PTPVAMSPLNQCCKSALCEQEEGSNK*
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mRNA from alignment at H-paniculata_contig770:11252..11930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig770.15713.1 ID=mRNA_H-paniculata_contig770.15713.1|Name=mRNA_H-paniculata_contig770.15713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=679bp|location=Sequence derived from alignment at H-paniculata_contig770:11252..11930+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCCCACCACCCCCACTCCCATTTCTTTCGTTGTCACTATGACTAGTGC
GATGGTTATTGCTGCCATTCTCACCGCTGTTGCTGTTGGCATTGTTGGCG
GCGGCGACGGCAACGGCGGCGGCGGCGGTGGTGGCGTCGTTGCTTCTCAG
CAATGGTTTGCTCTGCTGCCTCATCTTCGCCACTAGCCCCTGATCACCTC
CGTCTGGGTGATGCCCTTGCGGCCCGCCATTCACCACCACCTGGACCATC
CTTATTTTCTCCTCCTCCGTCCTCTTCGCAATCGTTTGTTTGTAAAGCGC
AAACAGAGAAAAACAAAACAAGTAAGGGAGCTGGGATCCCCCCTTACCAC
ACTACAACCGACCAGCTAGATCTGCGGGTCTGCTGCCCTCGGCTCGGGGC
AAGCCTCTTCACCGCCGCTGCCGGTAGAAAAACGATCGCAGCCAAACGCA
CACCAACACCTGTGGCGATGTCACCCCTAAATCAATGCTGTAAAAGCGCG
CTATGCGAGCAAGAAGAGGGATCTAATAAGTAATGCTTGGTGAAAGTTCC
CCTCCACCTATCAGGCAACTCGGTAAACCCAACTAACGGGTAAAATCCTT
CCCTTCCCTCACTTGCTGGGTAACTTAGGCCAATCCTCCCCAACGTAACC
CGTACGACCGTAGCTCGAGGCAATAGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig770:11252..11930+

>mRNA_H-paniculata_contig770.15713.1 ID=mRNA_H-paniculata_contig770.15713.1|Name=mRNA_H-paniculata_contig770.15713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig770:11252..11930+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTGCTCTGCTGCCTCATCTTCGCCACTAGCCCCTGATCACCTCCG
TCTGGGTGATGCCCTTGCGGCCCGCCATTCACCACCACCTGGACCATCCT
TATTTTCTCCTCCTCCGTCCTCTTCGCAATCGTTTGTTTGTAAAGCGCAA
ACAGAGAAAAACAAAACAAGTAAGGGAGCTGGGATCCCCCCTTACCACAC
TACAACCGACCAGCTAGATCTGCGGGTCTGCTGCCCTCGGCTCGGGGCAA
GCCTCTTCACCGCCGCTGCCGGTAGAAAAACGATCGCAGCCAAACGCACA
CCAACACCTGTGGCGATGTCACCCCTAAATCAATGCTGTAAAAGCGCGCT
ATGCGAGCAAGAAGAGGGATCTAATAAGTAAATGGTTTGCTCTGCTGCCT
CATCTTCGCCACTAGCCCCTGATCACCTCCGTCTGGGTGATGCCCTTGCG
GCCCGCCATTCACCACCACCTGGACCATCCTTATTTTCTCCTCCTCCGTC
CTCTTCGCAATCGTTTGTTTGTAAAGCGCAAACAGAGAAAAACAAAACAA
GTAAGGGAGCTGGGATCCCCCCTTACCACACTACAACCGACCAGCTAGAT
CTGCGGGTCTGCTGCCCTCGGCTCGGGGCAAGCCTCTTCACCGCCGCTGC
CGGTAGAAAAACGATCGCAGCCAAACGCACACCAACACCTGTGGCGATGT
CACCCCTAAATCAATGCTGTAAAAGCGCGCTATGCGAGCAAGAAGAGGGA
TCTAATAAGTAA
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