mRNA_H-paniculata_contig7697.15706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7697.15706.1
Unique NamemRNA_H-paniculata_contig7697.15706.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7697.15706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7697contigH-paniculata_contig7697:6213..6826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.67694-CDS-H-paniculata_contig7697:6212..66111622930952.67694-CDS-H-paniculata_contig7697:6212..6611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7697 6213..6611 +
1691481525.2978656-CDS-H-paniculata_contig7697:6212..66111691481525.2978656-CDS-H-paniculata_contig7697:6212..6611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7697 6213..6611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.6947303-UTR-H-paniculata_contig7697:6611..68261622930952.6947303-UTR-H-paniculata_contig7697:6611..6826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7697 6612..6826 +
1691481525.3085144-UTR-H-paniculata_contig7697:6611..68261691481525.3085144-UTR-H-paniculata_contig7697:6611..6826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7697 6612..6826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7697.15706.1prot_H-paniculata_contig7697.15706.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7697 6213..6611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7697.15706.1

>prot_H-paniculata_contig7697.15706.1 ID=prot_H-paniculata_contig7697.15706.1|Name=mRNA_H-paniculata_contig7697.15706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
PSPPASPTEGLLSSSSSSSTSSSAASSRSPLADESLALSLALSLSSPCSC
SSTIGSLFPFTTSVVLLSSAATATAASFDFFDFFVFLLLVLSAGVASPTE
VTAAFVSLPFCSSVFPMFEGSPLVSPNNISGL*
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mRNA from alignment at H-paniculata_contig7697:6213..6826+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7697.15706.1 ID=mRNA_H-paniculata_contig7697.15706.1|Name=mRNA_H-paniculata_contig7697.15706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=614bp|location=Sequence derived from alignment at H-paniculata_contig7697:6213..6826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCTCCCCCAGCCTCTCCCACGGAAGGGCTGCTGTCATCTTCCTCGTC
TTCATCGACGTCCAGCTCTGCAGCGTCATCTAGATCACCGCTAGCAGACG
AATCTTTGGCGTTGTCTTTAGCACTTTCTTTGTCATCTCCCTGTTCTTGC
TCTTCGACCATAGGGTCTCTCTTCCCTTTTACTACGAGTGTTGTGCTGCT
GTCGAGCGCTGCTACAGCTACTGCAGCGTCCTTCGATTTTTTTGATTTTT
TCGTTTTTTTGCTGCTGGTGCTCTCGGCTGGAGTGGCGTCACCCACTGAA
GTAACCGCAGCATTTGTTTCCTTACCCTTTTGTTCTTCGGTTTTTCCCAT
GTTTGAAGGCTCTCCGCTCGTCTCTCCGAACAATATCTCAGGTCTCTGAT
CTCATATCAACAAGTGTGCTATCTGCGTTTACACCCCCTAGGCGTGTTTT
TGTTTTTTAACACCCCCTGGAGGCTGATGCAGGGCGACATCAATAAGCTC
GAGGCACCTGCAAACCTCACAAGTACTAAGTAACATCTCACCCAGCGACG
CAGTTTTGTTTAAGCATTGTACATAACAAAATAAGTTTGGCAACATGCCA
TCTGTCGCAAGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig7697:6213..6826+

>mRNA_H-paniculata_contig7697.15706.1 ID=mRNA_H-paniculata_contig7697.15706.1|Name=mRNA_H-paniculata_contig7697.15706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig7697:6213..6826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCTCCCCCAGCCTCTCCCACGGAAGGGCTGCTGTCATCTTCCTCGTC
TTCATCGACGTCCAGCTCTGCAGCGTCATCTAGATCACCGCTAGCAGACG
AATCTTTGGCGTTGTCTTTAGCACTTTCTTTGTCATCTCCCTGTTCTTGC
TCTTCGACCATAGGGTCTCTCTTCCCTTTTACTACGAGTGTTGTGCTGCT
GTCGAGCGCTGCTACAGCTACTGCAGCGTCCTTCGATTTTTTTGATTTTT
TCGTTTTTTTGCTGCTGGTGCTCTCGGCTGGAGTGGCGTCACCCACTGAA
GTAACCGCAGCATTTGTTTCCTTACCCTTTTGTTCTTCGGTTTTTCCCAT
GTTTGAAGGCTCTCCGCTCGTCTCTCCGAACAATATCTCAGGTCTCTGAC
CGTCTCCCCCAGCCTCTCCCACGGAAGGGCTGCTGTCATCTTCCTCGTCT
TCATCGACGTCCAGCTCTGCAGCGTCATCTAGATCACCGCTAGCAGACGA
ATCTTTGGCGTTGTCTTTAGCACTTTCTTTGTCATCTCCCTGTTCTTGCT
CTTCGACCATAGGGTCTCTCTTCCCTTTTACTACGAGTGTTGTGCTGCTG
TCGAGCGCTGCTACAGCTACTGCAGCGTCCTTCGATTTTTTTGATTTTTT
CGTTTTTTTGCTGCTGGTGCTCTCGGCTGGAGTGGCGTCACCCACTGAAG
TAACCGCAGCATTTGTTTCCTTACCCTTTTGTTCTTCGGTTTTTCCCATG
TTTGAAGGCTCTCCGCTCGTCTCTCCGAACAATATCTCAGGTCTCTGA
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