mRNA_H-paniculata_contig7695.15704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7695.15704.1
Unique NamemRNA_H-paniculata_contig7695.15704.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7695.15704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7695contigH-paniculata_contig7695:766..2939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size215
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7695.15704.1prot_H-paniculata_contig7695.15704.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7695 799..2868 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.5280533-UTR-H-paniculata_contig7695:765..7981622930952.5280533-UTR-H-paniculata_contig7695:765..798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7695 766..798 +
1691481525.2475414-UTR-H-paniculata_contig7695:765..7981691481525.2475414-UTR-H-paniculata_contig7695:765..798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7695 766..798 +
1622930952.5849135-UTR-H-paniculata_contig7695:2868..29391622930952.5849135-UTR-H-paniculata_contig7695:2868..2939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7695 2869..2939 +
1691481525.2794576-UTR-H-paniculata_contig7695:2868..29391691481525.2794576-UTR-H-paniculata_contig7695:2868..2939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7695 2869..2939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.5477927-CDS-H-paniculata_contig7695:798..8251622930952.5477927-CDS-H-paniculata_contig7695:798..825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7695 799..825 +
1691481525.2620795-CDS-H-paniculata_contig7695:798..8251691481525.2620795-CDS-H-paniculata_contig7695:798..825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7695 799..825 +
1622930952.5635664-CDS-H-paniculata_contig7695:2784..28681622930952.5635664-CDS-H-paniculata_contig7695:2784..2868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7695 2785..2868 +
1691481525.2706578-CDS-H-paniculata_contig7695:2784..28681691481525.2706578-CDS-H-paniculata_contig7695:2784..2868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7695 2785..2868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7695.15704.1

>prot_H-paniculata_contig7695.15704.1 ID=prot_H-paniculata_contig7695.15704.1|Name=mRNA_H-paniculata_contig7695.15704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MINRIPFPEILPATWTARLESGVLALSSRRKEIVSA*
back to top

mRNA from alignment at H-paniculata_contig7695:766..2939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7695.15704.1 ID=mRNA_H-paniculata_contig7695.15704.1|Name=mRNA_H-paniculata_contig7695.15704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2174bp|location=Sequence derived from alignment at H-paniculata_contig7695:766..2939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAGCGGCCCGTGCCTCATGATGGCGTGAACCATGATCAATCGCATACC
CTTTCCTGAGGTACGTCCCATCCCATATTGCACTACCCCATCCTAACCGT
AAAAACAATATGAGTAGGCAGAGCCATACAACTGGTGGCAAAACTCTCAT
CCATGTACACAATCACTGCCGTTTGTGCTTTCTCTTCAGTAAGAGCGCCA
GAAAACTCTACCAGAAACTGTCTGTTACGAGCCTTCCTCGCGTTGTTTCG
CGGGAGGATTTTAGTCCTTTTACGACGGCGTCTTTAGTCTATACAACAGG
CTTCCTATCGCACCGTTCGACATGTCGTAATCACACTTAGCCCTGACCCA
TTCGCCTAGTGTTCGCTGGAAGACTTGCTGCCCGTCTTCGTGCTTGCCGC
TGATGAAAGCACGAAGCTTCACTGTTTGCAAATAGGTGAGGACAGTCCGC
CCGTTGTCTCCATTTGCCACGCCTCGTCCCTCCACCGATGTTGCCTTAAG
CGACTTCTGATCCTCCCATAAAGTGCGAATCTGTTCACCGCGCAGGCGGA
ACAAGCAAGCGCCACCATTTCTCCCAATGAACAATTGGCACTGCGTAACA
TGACACACGCAACAAGCTACAAAATATTGAAGATTCTCACTATTCAGAGC
GTCCGCAACTTGAGAGCATGGGGAGCATAAACATCGAGCACATTACTTCG
CTGAGGTGCAATCCGGTCAGTATTGTTCAAGTGAAGTCGACACAACAGAC
AGTACAAGGCGCGCTACACAGTAAAAAAAGACTTGGACACTGTGTGTGAG
AACTGTTGCGAAACGATATCTGTACACTACTCACTAGTTTGCTGTACTGT
ACTCACTACAGATGGCACGTACCTTGAACACCTTCTTTGGTCCAATGCGC
ATCACCCTAGCGGTCTCCCTTACAGCGGGGTTTCGGTCCATACCTGACTG
GACGAGATTGAATTACACCAAAAGGATAGCCCGGGACTGTGACGTATCCA
ACAGTGCTTCCTGCTGAGGAGCTAGCTCATCGCGCGCTGCCATAGCCGAA
ATCACCTCGCGGTGCTGCGCTGTCGTGTGGAGACGAATACGCTCCTGTTC
CCTCAGTACCTTCTCGCATGTGTCAACGTTTGCCTCACACTCAGTAAGTG
TACCGAACGCTACCATGCGCTCGTCTTGCGTTGTCCTAGCGCTGGCAATC
TCTGCCTCGCGTCTGGCAATCTCTGCTTGAGTTTTGGCTTCAGTCCGTGC
CTGAACTTTGGCTGCCTCACGTGCCGCCTTGTTGGCTGCTTCAGCAGTCG
CGCAGGCAGCCTCCCTCATTTTGATTGCTGCCTCCTTCGCATTTGCCATC
TTCACCAAGTTGGTAGTGTCAAGCTTGCCCTTGGCGTTTCTTCTACGTTT
TCGGCGCGCTTGTTGAGTCAGCTTTGCTCTGGCGCTTATTCGTAGCCATC
GTGCCGTGCCTGCCTGAGGCTCAACTGCCTCTACCGAAGGCGGCGTATCG
CGACAAGTATTTCGAATTTTGAAACTCTGGCTGGCGCGTCTTGCCCGTTA
GGTTGTCAGCTTTCTTCTGGAATCCGTTGTTCACGTTAGTTCGCAAAAAT
AGGTTCTACATCTTTTACCGACTAAAATTACACCATGTTTCAGAGGCATC
CATATTTGTCCTTCGCTGGTGTGCGGGGTGTATAGTTGCTCACCATGAGG
CTGATACCGTTTGAAAGTTACGATCTTCACCTTTCGTTTGATATCATCAA
GTGCACTGTAACCCTTCTGCAGAAGGAATTCGACAATTTAGAAAAAACGA
AAAACTTCACAAAACTGTTTTTTTCGGTGAATTTCTTTGGCGTTGAAAAA
CAAGGAAATTTACTCCCAATAATTCTGTTCCTCAGCAATAGCCGAAGTTG
GTCTCGTAGCCGGTAGCTCAAAGCTTCAGCAATCGGAGAAAAAAGGGTGA
GGTCCACCAAACTACAGCACAAGAGTCACATTTCTAAGGTGATATTCATC
TGCGCCGTTTCGCGTCCAGATCCTTCCCGCGACTTGGACGGCAAGATTGG
AATCTGGTGTTCTTGCTTTATCAAGTAGGCGCAAGGAAATCGTCTCGGCG
TGAGCGCGGGCAGTAATACGAGTTCGACGTGACCATTGACGCCAAGTGGT
ACCAGAAGTAGTACAAGGACTCTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7695:766..2939+

>mRNA_H-paniculata_contig7695.15704.1 ID=mRNA_H-paniculata_contig7695.15704.1|Name=mRNA_H-paniculata_contig7695.15704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig7695:766..2939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAATCGCATACCCTTTCCTGAGATGATCAATCGCATACCCTTTCC
TGAGATCCTTCCCGCGACTTGGACGGCAAGATTGGAATCTGGTGTTCTTG
CTTTATCAAGTAGGCGCAAGGAAATCGTCTCGGCGTGAATCCTTCCCGCG
ACTTGGACGGCAAGATTGGAATCTGGTGTTCTTGCTTTATCAAGTAGGCG
CAAGGAAATCGTCTCGGCGTGA
back to top