mRNA_H-paniculata_contig7661.15659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7661.15659.1
Unique NamemRNA_H-paniculata_contig7661.15659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7661.15659.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.020e-17
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:  406 RQQVEPYSLGHLRALFERLIDAQEGRGEGGETTVVETLRAISEVVVYGENQDAKMAAKVA 585
            +Q  EPYSLGHLR LF+RLIDAQEG+ EG ETTVVETLRAISEVVVYGENQDAK++A+ A
Sbjct:   96 QQAPEPYSLGHLRVLFQRLIDAQEGKVEG-ETTVVETLRAISEVVVYGENQDAKLSARAA 154
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BLAST of mRNA_H-paniculata_contig7661.15659.1 vs. uniprot
Match: D7FXA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.960e-13
Identity = 45/85 (52.94%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  295 MFWKST-----SGSRTRTDIGGNSRGSLNVGGXXXXXXXXXXRQQV-EPYSLGHLRALFERLIDAQEGRGEGGETTVVETLRAIS 531
            MFW+S      +G   R    G   G++  GG          +QQ  EPYSLGHLR LF+RLIDAQEGR EG ETTVVETLRA S
Sbjct:    1 MFWRSVPSVPWAGPSPRGSNNGAGGGAVGAGGRHAKGGNAQRKQQAPEPYSLGHLRVLFQRLIDAQEGRVEG-ETTVVETLRAAS 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7661.15659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K768_9PHAE2.020e-1780.00FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXA6_ECTSI5.960e-1352.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7661contigH-paniculata_contig7661:3545..8086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004640.1
Exons3
Model size849
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7661.15659.1prot_H-paniculata_contig7661.15659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7661 6989..8086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.0141616-UTR-H-paniculata_contig7661:3544..37321622930947.0141616-UTR-H-paniculata_contig7661:3544..3732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7661 3545..3732 +
1691481522.9842014-UTR-H-paniculata_contig7661:3544..37321691481522.9842014-UTR-H-paniculata_contig7661:3544..3732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7661 3545..3732 +
1622930947.0300937-UTR-H-paniculata_contig7661:6882..69881622930947.0300937-UTR-H-paniculata_contig7661:6882..6988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7661 6883..6988 +
1691481522.9954808-UTR-H-paniculata_contig7661:6882..69881691481522.9954808-UTR-H-paniculata_contig7661:6882..6988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7661 6883..6988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.0464091-CDS-H-paniculata_contig7661:6988..72171622930947.0464091-CDS-H-paniculata_contig7661:6988..7217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7661 6989..7217 +
1691481523.005392-CDS-H-paniculata_contig7661:6988..72171691481523.005392-CDS-H-paniculata_contig7661:6988..7217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7661 6989..7217 +
1622930947.0610733-CDS-H-paniculata_contig7661:7760..80861622930947.0610733-CDS-H-paniculata_contig7661:7760..8086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7661 7761..8086 +
1691481523.014725-CDS-H-paniculata_contig7661:7760..80861691481523.014725-CDS-H-paniculata_contig7661:7760..8086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7661 7761..8086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7661.15659.1

>prot_H-paniculata_contig7661.15659.1 ID=prot_H-paniculata_contig7661.15659.1|Name=mRNA_H-paniculata_contig7661.15659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MFWKSTSGSRTRTDIGGNSRGSLNVGGGGSGGGGGGGRQQVEPYSLGHLR
ALFERLIDAQEGRGEGGETTVVETLRAISEVVVYGENQDAKMAAKVAKSE
ALLHEQQQQQQQQEQESKEAEDGALSQQGFGDAGLEGNGSSTTSADNGNG
AGVVTAGGSGGAGGANTNFGVEIRSEDAFFELFW*
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mRNA from alignment at H-paniculata_contig7661:3545..8086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7661.15659.1 ID=mRNA_H-paniculata_contig7661.15659.1|Name=mRNA_H-paniculata_contig7661.15659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4542bp|location=Sequence derived from alignment at H-paniculata_contig7661:3545..8086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGGGTGTGTACGGAGCAAGGTGGAGCAAGGCGGAGCAAGGCGGAGCG
TACAAAGGCTCGCGCTATACACACGGGTTTCTCTTGTGTGTCATTCCCTG
GTGTTCTGTTTCCGAATCGACGAGGAGAAGAAGAGATTTTGGAACAACAA
AGTGCCCATCTTCAGGGAGGAACCATTTTGCAAACTCTGTAAGTAACAGT
GAACTGGTCGAAAGGTGCAATCACTGACTGTGCTATTGGCAATACACTAG
ATACTCTCTCAGCACCCTTCCGCTCTATCTAGACTGACTGTCTGTACTGT
CCAAGATGAGAGTGCCGTGTCGTCTTACTGGCTATGCCTTTGATCCCTAG
CGTCGGCACTGTGCAACGTATTGAATTGCCGTACCTATTCTTTAGTCTAA
AGCTCAGTCTGGTGTACGCTGTGTTGTCTCTCTATTAGCCGAGTGTTGAA
GATTGTGATGAACAGGTAGCAGTGTAAGTGCAGTCTAGTATGTGCCAATG
TGCTGGCTTGAGACCTGCTCCACTGGACGGGACTGTTATACACTCAACAA
TACAAGAGTGCAGTTACAACAATAGAGTGCCAATACAACTATATCTGAGA
GCAGTGAATCTCTTCATTCACTATGCTTAGAGATAAAGCACAGCTGCGTG
CAACCGACAATAGTACCGAAGGTGGCCTAGGTGCTCACCAAGGCAAAGGC
TAACTGCAGCTCTGAATTTGAGCAGCAGTTTAGTCCTGTTGCCATTCCAT
CTTTTGATGTGGGCCATCCCATAGGGTTGCTTTCAACAAACAGCCAGCCT
CAACACACTGTAGTCGGTACAGTTGGTAACAAGTCAGTCGTATAACTACA
GAGAGGTGTGCCGTCAGTATTGCTGACTGCTGTAGGGTACACCATGGTAA
TGCTTTCTACATCTTGTACAGTACAGGTACAGTACAGGCCGACCTTCGTG
CGCGGCTTGACCTTCGTCAAATTGATTCTGCACTTGGAATTCAGACATGA
GATCAACGGTCAATCGGATCGGATACAGTTGACGACCGACTGCGACTGGA
CGCTGATTTGGAACACTAAAAATATCCAAAAGTCTCCCCGCGAAAGGGGC
TGGGGCTCATGTTTTATATGTAATCGTCAGATCATCGACCACGTGTCCCC
TGGAGGATGAAGCTTTCCTCCTATCATAAATAGCGATTTCCAATGGCCAA
TCGCCCCGAAAGAGAGGAGGTTATCCATCTAACCTCAAATGTTCAGTTGT
GTTTACTTTGGAACAGAAGTAGATCAATAGGGGGGTTGGCCTCGTGTTGC
TGAAGTGTGAGGATGAAGTTTCAAGCCGTGGCATTAATTCGAGCTAATCA
ACAACGTTTCTTCACCTATATCATTAATCACAGTATAACTGCCTCGTTTT
GTTCAAATCTATCATATCCCCAACTCCCCCCACCGGCGGCGCTGAACGAG
GGTCAGCTAAGAAGATTGAACGATGAAAATTCTTGGTTCTCAAAACAAGG
GTAAACCGCTGGCCTAATAGTATAATAGAGTGTTTGCGCAAAAGGAATTC
CTTTTGAACATTTCGATTTGCGCCAATCGAGATACGAACTCCTATCAAAC
CCAGGTGCTGAAAATACGTTTGCGCCAATCCGATGATTTGATCATTATTT
CGTTGTACAAACATCGGGGTGTACCCCTCCCTACTTCACGACTGGGTCCC
CATGAGATTGTGATGGATATCCGGGCATCAGGCAGGGGCCTTGGAAACAT
GTACGAGGCAAAACACATTTTGCGCTGTCACCATAGAGACCTCTGGGACC
ATGATAGATGTCAGCGGTGGACCACGAGCTTCATCTTCAGTGTCAGCAAC
GGTGGCTTCCAGCATGGCGAGCGGCAGTTTTGCCGCCCTGGATATAGCGA
CCGTCTTCGCTCCTCTCATGGACGTCGATTCGCCTCCACCCCTGACAGCA
CAGCCGGTCAAGCCGCCACGACGGGCTCGACAACCTCAACTATACAGACC
GCGAGCAAGAGGGGCTAAATGAAGCGGGATGATGCCATGAACATCGCTAG
CGCGCACCGCAAGAACAGCCGAATTTGCACACGCTCCTAAGCGCACAGCG
CCCCACGGCGCCGATTGATCTGTAGTTGCGTGTGCCTTTCTGATTGACTC
ATTTGAAATATTCCGTTAGGTCTGAACAATAGAAAGAAACGTATTATTGG
GGACAGTTTTTTTTAACCGTGGACCACCCCTATCGCTCCTCCTAACTGTA
CAATTATTAACACGTTAGCCCAATCACGCAGACGCAGTCAGGCAACAGGA
GTTCCCGTGGGTTCTTTTTTTGCAACCACCTACAGTTGCGTGTACTTAAG
TAGCAAGTAGGACCCGCTTTTTTTTCTGTCGATAAATCTGCTAACCTGTC
AGTGCAATATATTTTTTCAATGGTAACGTTCGTACACATGTAAATCAATG
CCCATCATGCACCACCCGTCTAGCAGCTGACACGCGGGCTGCAGTATAGC
TGCCCCCTATAGCCAGAAGAAAACAGCAAAAAGTAGCGGAAAGGATTCCG
AGCCCCGAGCTACGGCATCAGCTGGAAAAAGACAAGCAGTACTACCGGAC
CTCATGTGTGTTTGTGACGAACGCTTGTACCACGAAAGGAATATCGTACA
GCCGGGAGGTATCACACTACCAGGGTGCGGACGCTTGTTAAACGCAAGTA
TCCCGACGACCACGGTGCTACTGACGACAAATTAAGCCGTGTGCCGTGGG
AAAGATCTTGCGGGGATCTGTCTATCTGTCGATTTGATGAGTTCTTCCGA
CTGAACAAGGTCTCTGTTCTTGAGATAGTCGCGTTTCGAAAAACATACGC
ACCCTGGTATCAGCCTCCGGATTTTTTAGTAAGGTCCCTCCCTATCCAGA
CGGTTAAATATCTAACAAATATTTCTTCCTTTTGCTCATAGATGCGTAAC
GGAGAAGCTTAAATTGAACCCAGAAGAATAGTAACAATGAACATCTCCCG
ACTTGCTGACTATTAGAATCCACCCCTCAAATGCCCCCCCCTCCTCGTTT
TTTTTTTTTACAAGTGTATATTCCCCCAACTGATGTTTGATGAGGTCATT
CCTCATTTTTTTCCCACTCTGCTAATAAGTGTATACAGCTGAAGCTTGAA
GTCAGCTGCGTATCCTCAACATCAAGAACAATTTGGTCAATTGTCTGAAA
TTCAGAGCTGTACATAGTTCAACTAACTGTAGCAGGGCTAACTTACGAAT
GAGAATCCTGGTGGGTGAAACGACCCTTTTTTTTTTATGAGTTCACCCCC
CCCCCCCCCTCTCCTCCTCTCTTTTCGCTCCTTCCCAGTTTTTTCCCCGG
ATTTCACCCTGTCTTTTCCAGACGCGCAAATCACTTGTGTAAACAAAAAC
CGCCGCAGCAACAGGAGCAGTAGTGGCAGTAGTAGCAAGCAGCCATGTTT
TGGAAGTCAACAAGCGGTTCTCGAACCCGAACGGATATAGGCGGCAACTC
AAGAGGGTCTCTGAATGTCGGCGGCGGCGGCAGCGGCGGCGGCGGGGGTG
GCGGCAGGCAACAGGTGGAGCCGTATTCTCTGGGTCACCTGAGAGCCCTG
TTCGAGAGGCTGATCGATGCGCAGGAAGGCCGGGGTGAAGGAGGAGAGAC
TACCGTCGTGGAAACGCTGAGAGGTGAAAGTGAACAATAGTGGGAGAGTC
GGGGAGGGAAGAAGGCAGGCAGGAAGACGGATAAATACAGAGACAGACAG
AGACAGAGACAGAGAAGAATATCTCTCTCTATACATTTGTCGGTGGTTTG
GGAGGAGGGGGGAGAGGTTCACCTTGAGTCCTTGCGGGTAGCGCTTGCTT
ATGTGTGTGTGTGTGTGTGTGTGTGTAATGTATCACGTTCGTTTGTGTTC
CAAATAAGACGACTTGTTGAAGCTGATGGCGGACGAGCAGCATTGGAGAG
AGATTGTGATGGTGATAGTAACGATGATGAATGACAAATGATAATGGCTT
TACTCTCGGAACAGCTTCCGTTATCTATCGAAGTGTATTATTCAACAAGT
GTCAAGTGAAGCCAAAAATAGTTTCAAGGGGCATCTGGATTACAATACGG
CACTGTCGTAGCCGCCGTGACCTACTTAATTAGTATTTTTGAAGACATAT
CGCGTTAGAAACATTAAAACCCTTCAAACCCCTTCCCTTCCCCTAATACA
ACCCCAACCATTGCAGCCATATCTGAAGTGGTTGTATACGGCGAAAACCA
GGATGCGAAAATGGCCGCTAAGGTCGCTAAGTCAGAAGCTCTCTTACATG
AGCAACAGCAGCAACAGCAGCAGCAGGAACAGGAATCCAAAGAGGCGGAG
GACGGGGCGTTATCGCAACAGGGGTTTGGGGACGCGGGGTTAGAAGGGAA
CGGGTCCTCTACAACGTCGGCGGACAATGGCAATGGAGCTGGAGTTGTTA
CCGCGGGTGGATCAGGCGGAGCAGGGGGCGCGAACACGAACTTTGGTGTG
GAAATACGAAGCGAAGATGCGTTTTTCGAGCTGTTCTGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7661:3545..8086+

>mRNA_H-paniculata_contig7661.15659.1 ID=mRNA_H-paniculata_contig7661.15659.1|Name=mRNA_H-paniculata_contig7661.15659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig7661:3545..8086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTGGAAGTCAACAAGCGGTTCTCGAACCCGAACGGATATAGGCGG
CAACTCAAGAGGGTCTCTGAATGTCGGCGGCGGCGGCAGCGGCGGCGGCG
GGGGTGGCGGCAGGCAACAGGTGGAGCCGTATTCTCTGGGTCACCTGAGA
GCCCTGTTCGAGAGGCTGATCGATGCGCAGGAAGGCCGGGGTGAAGGAGG
AGAGACTACCGTCGTGGAAACGCTGAGAGATGTTTTGGAAGTCAACAAGC
GGTTCTCGAACCCGAACGGATATAGGCGGCAACTCAAGAGGGTCTCTGAA
TGTCGGCGGCGGCGGCAGCGGCGGCGGCGGGGGTGGCGGCAGGCAACAGG
TGGAGCCGTATTCTCTGGGTCACCTGAGAGCCCTGTTCGAGAGGCTGATC
GATGCGCAGGAAGGCCGGGGTGAAGGAGGAGAGACTACCGTCGTGGAAAC
GCTGAGAGCCATATCTGAAGTGGTTGTATACGGCGAAAACCAGGATGCGA
AAATGGCCGCTAAGGTCGCTAAGTCAGAAGCTCTCTTACATGAGCAACAG
CAGCAACAGCAGCAGCAGGAACAGGAATCCAAAGAGGCGGAGGACGGGGC
GTTATCGCAACAGGGGTTTGGGGACGCGGGGTTAGAAGGGAACGGGTCCT
CTACAACGTCGGCGGACAATGGCAATGGAGCTGGAGTTGTTACCGCGGGT
GGATCAGGCGGAGCAGGGGGCGCGAACACGAACTTTGGTGTGGAAATACG
AAGCGAAGATGCGTTTTTCGAGCTGTTCTGGTAACCATATCTGAAGTGGT
TGTATACGGCGAAAACCAGGATGCGAAAATGGCCGCTAAGGTCGCTAAGT
CAGAAGCTCTCTTACATGAGCAACAGCAGCAACAGCAGCAGCAGGAACAG
GAATCCAAAGAGGCGGAGGACGGGGCGTTATCGCAACAGGGGTTTGGGGA
CGCGGGGTTAGAAGGGAACGGGTCCTCTACAACGTCGGCGGACAATGGCA
ATGGAGCTGGAGTTGTTACCGCGGGTGGATCAGGCGGAGCAGGGGGCGCG
AACACGAACTTTGGTGTGGAAATACGAAGCGAAGATGCGTTTTTCGAGCT
GTTCTGGTAA
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