mRNA_H-paniculata_contig7656.15650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7656.15650.1
Unique NamemRNA_H-paniculata_contig7656.15650.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 1.940e-92
Identity = 151/264 (57.20%), Postives = 195/264 (73.86%), Query Frame = 1
Query:  139 SSMAILTAVASMLATATIS--QALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDD-NCGFLLESLCMEGAG-GCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYT---NEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVLPAMGD 909
            SS+A L A+A +L   TI+  +AL+V  P+   TVV+G PY V W G+S+D RF+IDL YCGS+S+CF++  CGF L ++C EG G GC   A+    V  PEPLGG S+ GY++RIAEVG   D+ RCSDDFYL++S D P V   G P+I VV+PTA+++AI+GE YTVEFDYDNGFG ++GRFKIDLY     +G GDCG WV S+CDKPD+GC DS G+Y++V+P  +E GMYKIRVG FGDD++YACS +FEV+ A  D
Sbjct:    3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 9.010e-90
Identity = 144/269 (53.53%), Postives = 190/269 (70.63%), Query Frame = 1
Query:  139 SSMAILTAVASMLA-TATISQALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDD--NCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVLP------AMGDNIW 918
            SS+A LTA+A +L  T T ++ALRV  P+   +V +G PY V W G+ +D RF++DL YCGS+SFCF +  +CGF + ++C E    C +  +    V  PEP+ G S+NGY+VRI+EVG   D+ RCS+DFYLVAS DV      G P++ VV+P A ++A++GE YTVEFDYDNGFG ++GRFKIDLY  EG GDCG WV S+CDKPD+GC+DS G+YD+V+P  +E GMYKIRVG FGDDS+YACS +FE+        A G  +W
Sbjct:    3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 1.490e-82
Identity = 138/256 (53.91%), Postives = 183/256 (71.48%), Query Frame = 1
Query:  139 SSMAILTAVASMLATA-TISQALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFD--DNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVLP 897
            SS+A + A+  ML    T ++ALRV  P+   TVV+  PY V W G+S D RF+IDL YCGS+SFCF+  D CGF + +LC EG   C    +    V +PEP+ G S++GY+VRI +VG   ++ RCSD+FYL++S D    +    P++ VV+P++ ++A++G  YTVEFDYDNGFG + GRFKIDLY  EGTGDCG WV S+CDKPD+GC D+ G+YDIV+P  +E GMYKIRVG FGDDSV+ACS +FEV+P
Sbjct:    3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.500e-77
Identity = 128/234 (54.70%), Postives = 162/234 (69.23%), Query Frame = 1
Query:  199 ALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVLPA 900
            AL V  P+EG  VVA   Y VEWTG+ S+ R++IDL YCGS   C +D CG  + +LC  G  GC  D  G YD++MPEP+ G S +GYKVR+A+V    DS  CSD+FYL+A  + P     G P + V SP++   A +GEEYTVEFDYDNG G+ VGRF IDLY+  G+GDCG ++ ++CDKP IGCKDS G+YD+ +P  AE+GMY IRVG F DDSVY CS+ FE+L A
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSM--CMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 5.230e-76
Identity = 125/237 (52.74%), Postives = 160/237 (67.51%), Query Frame = 1
Query:  190 ISQALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVLPA 900
            ++ AL V  P+ G  VV+   Y VEW+G+ S+ RF+IDL YC S   C +D CG  + +LC  G  GC  D  G YD++MPEP+ G S +GYKVR+A+V    DS  CSD+FYL+A  D P     G P + V SP+    A +GEEYTVEFDYDNG G+ VGRF IDLY   G+GDCG ++ ++CDKP IGCKDS G+YD+ +P  AE+GMY IRVG F D+SVY CS+ FE+L A
Sbjct:   17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSM--CMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDD-EDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA 249          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 9.110e-73
Identity = 122/231 (52.81%), Postives = 161/231 (69.70%), Query Frame = 1
Query:  199 ALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEV 891
            AL+V+ PS+G+TV+A   Y VEWTG+SSD RF+IDL YCGS   C +D+CG  + +LC  G  GC  D  G YD++MPEP+ G S +GYKVR+ ++    D+  CSD+FYL+AS++ P V     P++ V SP +  +A +  EYTVEFDYDNG G+ V RF IDLY  +G GDCG +V SICDKP IGCKDS G+YD+ +P   ++G YKIRV  F DDS+Y+CS  F +
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.020e-69
Identity = 126/232 (54.31%), Postives = 157/232 (67.67%), Query Frame = 1
Query:  199 ALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVL 894
            AL V  P+ G  VVA S Y VEWTG++S  R+DIDL YCGS   C +D CG  + +LC  G  GC  D  G YDV+MPEP+ G SS GYKV + +     D   CS DF L+AST+ P     GA  ++V SP+    A++G EYTVEFDYDNG G+ V RF IDLY++ G+GDCG +V +ICDKP IGCKDS G+YD+V+P   ESGMY IRVG F DD VY CS++FE++
Sbjct:   19 ALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 6.350e-69
Identity = 121/232 (52.16%), Postives = 153/232 (65.95%), Query Frame = 1
Query:  199 ALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVL 894
            AL V  PS  + VVA   Y VEWTG+ S  RF+IDL +CGS   C +D+CG  + +LC  G  GC  D  G YD++MPEP+ G S++GYKVR+ +V    DS+ CSD FYL+AS D P   +     + V SP     A +GEEYTVEFDYDNG G++V RF IDLY  +G GDCG +V SICDKP IGCKDS G+YD+ +P   E+G YKIRVG F D+ +Y CS  F ++
Sbjct:   19 ALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSM--CMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSD-EDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 5.760e-65
Identity = 118/233 (50.64%), Postives = 154/233 (66.09%), Query Frame = 1
Query:  199 ALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYT-NEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEVL 894
            AL V  P+ G++V+A   Y VEWTG+S D+RF+IDL YCGSF  C +D CG  + +LC  GA GC  D  G YD++MPEP+ G SS GYKV + +      S+ CS DF LVASTD P     G  S+ V SP+    A++G  YTVE+DY+NG G+   RF IDLY+   GTGDCG +V ++CDKP IGC DS G+YD+ +P    +GMY +RVG F DD ++ CSE FE++
Sbjct:   19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSF--CMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTD-SNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.370e-63
Identity = 119/232 (51.29%), Postives = 153/232 (65.95%), Query Frame = 1
Query:  199 ALRVTIPSEGMTVVAGSPYPVEWTGSSSDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAP-SIAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSEAFEV 891
            AL V  P  G++V+A   Y VEWTG+++  RF+IDL YC SF  C DD CG  + +LC  GA GC  D+ G YD+IMPEP+ G SS GYKV +       D + CSDDF L+AS D P  EAG    S+ V SP+    A++GE YTVE+DY+NGFG+   RF +DLY   GTGDCG +V ++CD+P IGC DS G+YD+ +P    +GMY IRVG F D+ +Y CS+ FEV
Sbjct:   19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSF--CMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAP--EAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7656.15650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI1.940e-9257.20EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE9.010e-9053.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI1.490e-8253.91EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI1.500e-7754.70EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE5.230e-7652.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE9.110e-7352.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3E8_ECTSI1.020e-6954.31Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FYL2_ECTSI6.350e-6952.16EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3F0_ECTSI5.760e-6550.64EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE3.370e-6351.29GPI-anchored domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7656contigH-paniculata_contig7656:706..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1725
Cds size795
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.9773874-UTR-H-paniculata_contig7656:705..8341622930945.9773874-UTR-H-paniculata_contig7656:705..834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7656 706..834 +
1691481522.4954658-UTR-H-paniculata_contig7656:705..8341691481522.4954658-UTR-H-paniculata_contig7656:705..834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7656 706..834 +
1622930946.0875504-UTR-H-paniculata_contig7656:3231..40321622930946.0875504-UTR-H-paniculata_contig7656:3231..4032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7656 3232..4032 +
1691481522.5849001-UTR-H-paniculata_contig7656:3231..40321691481522.5849001-UTR-H-paniculata_contig7656:3231..4032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7656 3232..4032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.99476-CDS-H-paniculata_contig7656:834..9531622930945.99476-CDS-H-paniculata_contig7656:834..953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 835..953 +
1691481522.507706-CDS-H-paniculata_contig7656:834..9531691481522.507706-CDS-H-paniculata_contig7656:834..953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 835..953 +
1622930946.0119402-CDS-H-paniculata_contig7656:1597..16881622930946.0119402-CDS-H-paniculata_contig7656:1597..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 1598..1688 +
1691481522.5266597-CDS-H-paniculata_contig7656:1597..16881691481522.5266597-CDS-H-paniculata_contig7656:1597..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 1598..1688 +
1622930946.0299318-CDS-H-paniculata_contig7656:2056..23591622930946.0299318-CDS-H-paniculata_contig7656:2056..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 2057..2359 +
1691481522.5424614-CDS-H-paniculata_contig7656:2056..23591691481522.5424614-CDS-H-paniculata_contig7656:2056..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 2057..2359 +
1622930946.0493731-CDS-H-paniculata_contig7656:2702..28381622930946.0493731-CDS-H-paniculata_contig7656:2702..2838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 2703..2838 +
1691481522.5582385-CDS-H-paniculata_contig7656:2702..28381691481522.5582385-CDS-H-paniculata_contig7656:2702..2838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 2703..2838 +
1622930946.0700307-CDS-H-paniculata_contig7656:3085..32311622930946.0700307-CDS-H-paniculata_contig7656:3085..3231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 3086..3231 +
1691481522.5689833-CDS-H-paniculata_contig7656:3085..32311691481522.5689833-CDS-H-paniculata_contig7656:3085..3231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7656 3086..3231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7656.15650.1prot_H-paniculata_contig7656.15650.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7656 835..3231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7656.15650.1

>prot_H-paniculata_contig7656.15650.1 ID=prot_H-paniculata_contig7656.15650.1|Name=mRNA_H-paniculata_contig7656.15650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MTFSSMAILTAVASMLATATISQALRVTIPSEGMTVVAGSPYPVEWTGSS
SDARFDIDLAYCGSFSFCFDDNCGFLLESLCMEGAGGCALDANGGYDVIM
PEPLGGISSNGYKVRIAEVGGGVDSVRCSDDFYLVASTDVPMVEAGGAPS
IAVVSPTAESVAISGEEYTVEFDYDNGFGNRVGRFKIDLYTNEGTGDCGG
WVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGAFGDDSVYACSE
AFEVLPAMGDNIWA*
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mRNA from alignment at H-paniculata_contig7656:706..4032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7656.15650.1 ID=mRNA_H-paniculata_contig7656.15650.1|Name=mRNA_H-paniculata_contig7656.15650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3327bp|location=Sequence derived from alignment at H-paniculata_contig7656:706..4032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCTTCTCTTGACAACACTAACGGCAACAGAACAGGGCAGCACTCGT TCGAAGCATTGTATTCCTGAATACGCAACCAAGTGTTTGGTCAACAGCTC CATCCCATCTTTTTCTTCATACACAAAAGATGACCTTTTCCAGCATGGCG ATCCTGACCGCAGTGGCGAGCATGCTGGCAACAGCGACAATTTCTCAGGC ACTACGTGTCACCATACCGTCGGAGGGTATGACGGTGGTAGCTGGGAGGT TAGTGCAAAGCATATTTTTGCACAGGGGCTTATAGTTCGTACCTATGGCC ACGCCCGATGTCAACACATGATGTGGCGGTCATCTTTGGGGGTCAGCTAG CGTTTGGATTAAAAGGTATATGTCGGTTCGCACAACGACCTGTAGGGTCG GAGGGGGTTTTCGTACCATCTCTTGTTCCCTACATCAAGAACAGAGGAGA ACATCGCCTATCAGTACGATAATGGACATATTGAGTCGCCGCTGTTCAGA CAGGTTCACCGCATACGGTACCCACATCGGAGATAGATTATGTGCATGAT CCTGCCCACAACAACTGAGTGCTTAACTTGTATATTGATTTGCGTGTTGT GTCAGATGAATATTGCCGTGCCGTTTTTCGTTTGTAACCTTATGATGCTA TTGGTTGCTGCCGTCAAATTCATCACACCACTTTTGCCTGATTTTGAGGG CGCTCACTGCTTGCCGAGGTTTGTGGTTTCTCTCACAAAGATGAACCCAT GTTCTTGTCCTCTTTGTTTCTCATAGAGCGGTGCATAACGTTGAGATGTC TCTTGCCCGCAAGTGCTGTCATGATAGCCTATTTCGCTGTTCATTGCTTC AACCGCGTGTCTCCTGTTTGGTTTTGCTCTCTATCGTCGTAGCCCCTACC CTGTGGAGTGGACGGGCTCCTCGTCAGACGCGCGATTCGACATCGACCTC GCCTACTGTGGTTCCTTCTCGTTTTGCTTCGACGTGGGTGCCCGCCAACA TTTTTTATTACAGCACAAGAGATAGGACACCGTACTGAACAATATACTTA CCGTACACTACTCTTGCAGCAGTGGGTACATATTGACAGGACAGCATCGC GTTAAGATTTCGCTGGTAGACTTTCAGATATCCGCGTATGTAGGACATGT AGACATGGCATTGGCTACGACTACAAGCACAAGTTGTAATCTAGCACTCA ACATATTCTTTACAAAAAGGAGAAATCGGGATTACATCAGCGTGCGAGGT GTTCTCTGTGACCTCCGCTGATTGCCTCCCGCTAGTGACCGGGGTTCACT CCGATCACCTCCCTGCTGTCGTACCCATCGTGCCTCGCGTGCAATCCGCA GGATAACTGCGGTTTTCTCCTGGAAAGCTTGTGCATGGAGGGAGCCGGGG GTTGCGCTTTGGACGCCAACGGCGGCTACGATGTGATCATGCCAGAGCCG TTGGGAGGGATCTCCAGCAATGGCTACAAGGTGCGGATTGCAGAGGTCGG AGGCGGCGTCGACAGTGTTCGATGCTCGGATGACTTCTACTTGGTCGCAT CCACGGACGTTCCCATGGTTGAGGCAGGTGGGGCTCCGTCAATAGCTGTG GTTTCTCCGACGGCCGAGTCGGTCGCAATTTCCGGGGAGGAGTACACTGT GGAGGTGAGACCACAGCGGTGGACGTACGTCTTCGTTGATTGTGCGCTTC TGTAGAGTTTTTTCGAGTAAAATAGTTCTCTAGATATCGATGTTCTGGCT TAAATAGGAAATCGAGGACTCGAACCAGCGACCTATTCGTATACCTGCAA GACGTTCCTTTAAATTTCAAGTCTTTTGTATCAACAGCCGTCATTGTGTG TGTTTTTGCAGGTTTCACGCGTCATATTATTGGCGAAGATCATGTTTGAT AGAGCCCTTGAGAGCAGAAGAACCATACCAGTACAGTCCAAGCGTCAATT GTGTTCCCATTTCCGATGCTACTGTCTGTTTCATGCCTTGTGTTCAGTTT GACTACGACAACGGGTTTGGCAACAGGGTAGGACGGTTCAAGATTGATCT GTATACTAATGAGGGAACCGGTGACTGCGGCGGCTGGGTCGGTTCTATCT GCGACAAGCCTGACATCGGCTGCAAAGACTCGAGTGAGTTGTGTCCCTCG TAGAAGATGTTGGGACAGTTCATGTTCGAGCGGTTTAGAAAGGAGGCACT CGAAGGAAACTTGTCGTGGGGACGTGTATCGCTATTATAGCCACTATGAT ATGTAATGTTATACGCGTTCGACACGTCGAGCGGGTTCTCAGGTTGGCGT GCTGATGGTCATCTCACATATTTTTGTAATCCCGTTTGTGTTCCTCGTTT GTGACGACTACATGCTACTTGTTGGATCAGCTGGAAACTACGACATCGTG ATGCCGCCAGTAGCCGAATCTGGTATGTACAAGATTCGCGTGGGCGCGTT CGGGGACGACTCTGTTTACGCTTGCTCTGAGGCGTTCGAGGTCTTACCTG CTATGGGCGATAACATCTGGGCATAAATCGAGTCAGATATCATGACAGGT GCACATCAAGTTTCGGATGTCGACCGGCGATGGCGGTAGTAAAGCGCTAG ATGCGCACATGTAGATGTGTATCTCTATTCAGGCATTGTGCAGTGACACG AAATCAGTTTCAGACAGACTAAATGTTTACTGGCGCGACGGCTTCTTTTA GGCATGTAGAGCTACACTAGACATGTCGAGCACTGATGTATGCGTGTTTT TCGTTGTGATTGGTTTGTGTTTGTTGGGTATGATGTGTTGTGTTTTGTGT GTTGTGTACGAGATTGTGTTGGGTGTAGCCACTCGTCGTGTTGTGCTGAG AGGGCCAAAAGTCGGTCGAGCACAATTTGGTTTGTTGAGATCAACCCTTG GGTTGTTGGGTATTGGCGTTCCCCTCGATCATGAGCTCCGGAATTGGTTG TTTGGGTACGTGAGTGGATTATGTGTCACGTCCATCGTGGGGAAAGAAAT AGAAAGCGGGTACCCTTGGGTAGCCGAAGGATGATGTGTTCGTGAATTTG GAGTTAGGGTCGCTGATTGTAGCGGAGATGAACACAACTGAGAAATAAAG AATATGGGCGAGCCGTTTGCTTGCATGTATTCCCGCAGCTTGTTGGTTTT TACAGACGAAAGCGCGTCCCGACAATGCAGTGACCCGGTGGAGATAATGA CTGAAAGAGGTATTTTTGGAGGAGAGAGTGTTTCAGTGCCAGGCGGGCTC ATGAATGGTCGAGAACCGTGCGATTCCCGGTCATAATCTAGTACTCGCAC ATGGGAAACAGAGACTTTGCCTCAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7656:706..4032+

>mRNA_H-paniculata_contig7656.15650.1 ID=mRNA_H-paniculata_contig7656.15650.1|Name=mRNA_H-paniculata_contig7656.15650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig7656:706..4032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTTTTCCAGCATGGCGATCCTGACCGCAGTGGCGAGCATGCTGGC
AACAGCGACAATTTCTCAGGCACTACGTGTCACCATACCGTCGGAGGGTA
TGACGGTGGTAGCTGGGAGATGACCTTTTCCAGCATGGCGATCCTGACCG
CAGTGGCGAGCATGCTGGCAACAGCGACAATTTCTCAGGCACTACGTGTC
ACCATACCGTCGGAGGGTATGACGGTGGTAGCTGGGAGCCCCTACCCTGT
GGAGTGGACGGGCTCCTCGTCAGACGCGCGATTCGACATCGACCTCGCCT
ACTGTGGTTCCTTCTCGTTTTGCTTCGACCCCCTACCCTGTGGAGTGGAC
GGGCTCCTCGTCAGACGCGCGATTCGACATCGACCTCGCCTACTGTGGTT
CCTTCTCGTTTTGCTTCGACGATAACTGCGGTTTTCTCCTGGAAAGCTTG
TGCATGGAGGGAGCCGGGGGTTGCGCTTTGGACGCCAACGGCGGCTACGA
TGTGATCATGCCAGAGCCGTTGGGAGGGATCTCCAGCAATGGCTACAAGG
TGCGGATTGCAGAGGTCGGAGGCGGCGTCGACAGTGTTCGATGCTCGGAT
GACTTCTACTTGGTCGCATCCACGGACGTTCCCATGGTTGAGGCAGGTGG
GGCTCCGTCAATAGCTGTGGTTTCTCCGACGGCCGAGTCGGTCGCAATTT
CCGGGGAGGAGTACACTGTGGAGGATAACTGCGGTTTTCTCCTGGAAAGC
TTGTGCATGGAGGGAGCCGGGGGTTGCGCTTTGGACGCCAACGGCGGCTA
CGATGTGATCATGCCAGAGCCGTTGGGAGGGATCTCCAGCAATGGCTACA
AGGTGCGGATTGCAGAGGTCGGAGGCGGCGTCGACAGTGTTCGATGCTCG
GATGACTTCTACTTGGTCGCATCCACGGACGTTCCCATGGTTGAGGCAGG
TGGGGCTCCGTCAATAGCTGTGGTTTCTCCGACGGCCGAGTCGGTCGCAA
TTTCCGGGGAGGAGTACACTGTGGAGTTTGACTACGACAACGGGTTTGGC
AACAGGGTAGGACGGTTCAAGATTGATCTGTATACTAATGAGGGAACCGG
TGACTGCGGCGGCTGGGTCGGTTCTATCTGCGACAAGCCTGACATCGGCT
GCAAAGACTCGATTTGACTACGACAACGGGTTTGGCAACAGGGTAGGACG
GTTCAAGATTGATCTGTATACTAATGAGGGAACCGGTGACTGCGGCGGCT
GGGTCGGTTCTATCTGCGACAAGCCTGACATCGGCTGCAAAGACTCGACT
GGAAACTACGACATCGTGATGCCGCCAGTAGCCGAATCTGGTATGTACAA
GATTCGCGTGGGCGCGTTCGGGGACGACTCTGTTTACGCTTGCTCTGAGG
CGTTCGAGGTCTTACCTGCTATGGGCGATAACATCTGGGCATAACTGGAA
ACTACGACATCGTGATGCCGCCAGTAGCCGAATCTGGTATGTACAAGATT
CGCGTGGGCGCGTTCGGGGACGACTCTGTTTACGCTTGCTCTGAGGCGTT
CGAGGTCTTACCTGCTATGGGCGATAACATCTGGGCATAA
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