mRNA_H-paniculata_contig76443.15640.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76443.15640.1
Unique NamemRNA_H-paniculata_contig76443.15640.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76443.15640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76443contigH-paniculata_contig76443:147..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size448
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.5680535-UTR-H-paniculata_contig76443:146..2311622930944.5680535-UTR-H-paniculata_contig76443:146..231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig76443 147..231 +
1691481521.84553-UTR-H-paniculata_contig76443:146..2311691481521.84553-UTR-H-paniculata_contig76443:146..231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig76443 147..231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.5816512-CDS-H-paniculata_contig76443:231..5941622930944.5816512-CDS-H-paniculata_contig76443:231..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76443 232..594 +
1691481521.8536885-CDS-H-paniculata_contig76443:231..5941691481521.8536885-CDS-H-paniculata_contig76443:231..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76443 232..594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76443.15640.1prot_H-paniculata_contig76443.15640.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76443 232..594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76443.15640.1

>prot_H-paniculata_contig76443.15640.1 ID=prot_H-paniculata_contig76443.15640.1|Name=mRNA_H-paniculata_contig76443.15640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MNPCRVSDDDATAPPRPPDAPSLLPPALFLPLPAATAAGSMACTSVADAV
EAAAAAAARATVEAGGTDGSGTVGSVAADQAVAKSTCGKGVRRRVYRKNR
RSKSRGVDYTPQDDSGLCNVC
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mRNA from alignment at H-paniculata_contig76443:147..594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76443.15640.1 ID=mRNA_H-paniculata_contig76443.15640.1|Name=mRNA_H-paniculata_contig76443.15640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=448bp|location=Sequence derived from alignment at H-paniculata_contig76443:147..594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTACACTCTAGCGACGGACGCACAGCCGAAGCCAGGACATCGCATGCC
TGGGGTGCGCATTTTATCGCAACACGTTGTCCAGAATGAACCCCTGTCGC
GTAAGCGATGATGACGCCACCGCGCCACCCCGGCCCCCAGATGCCCCGTC
GCTCCTCCCGCCAGCCCTTTTTTTGCCGCTTCCTGCTGCTACGGCGGCGG
GCTCGATGGCATGCACGTCTGTGGCGGATGCGGTAGAAGCAGCGGCAGCA
GCAGCAGCAAGAGCAACAGTGGAGGCAGGAGGGACCGATGGAAGCGGTAC
TGTTGGGTCCGTTGCGGCGGACCAGGCGGTGGCAAAAAGCACCTGTGGCA
AGGGGGTGAGGCGACGGGTATACCGCAAAAATAGAAGATCTAAAAGCCGT
GGGGTGGACTATACTCCGCAAGATGACTCCGGCTTGTGCAACGTCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig76443:147..594+

>mRNA_H-paniculata_contig76443.15640.1 ID=mRNA_H-paniculata_contig76443.15640.1|Name=mRNA_H-paniculata_contig76443.15640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig76443:147..594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCCCTGTCGCGTAAGCGATGATGACGCCACCGCGCCACCCCGGCC
CCCAGATGCCCCGTCGCTCCTCCCGCCAGCCCTTTTTTTGCCGCTTCCTG
CTGCTACGGCGGCGGGCTCGATGGCATGCACGTCTGTGGCGGATGCGGTA
GAAGCAGCGGCAGCAGCAGCAGCAAGAGCAACAGTGGAGGCAGGAGGGAC
CGATGGAAGCGGTACTGTTGGGTCCGTTGCGGCGGACCAGGCGGTGGCAA
AAAGCACCTGTGGCAAGGGGGTGAGGCGACGGGTATACCGCAAAAATAGA
AGATCTAAAAGCCGTGGGGTGGACTATACTCCGCAAGATGACTCCGGCTT
GTGCAACGTCTGCATGAACCCCTGTCGCGTAAGCGATGATGACGCCACCG
CGCCACCCCGGCCCCCAGATGCCCCGTCGCTCCTCCCGCCAGCCCTTTTT
TTGCCGCTTCCTGCTGCTACGGCGGCGGGCTCGATGGCATGCACGTCTGT
GGCGGATGCGGTAGAAGCAGCGGCAGCAGCAGCAGCAAGAGCAACAGTGG
AGGCAGGAGGGACCGATGGAAGCGGTACTGTTGGGTCCGTTGCGGCGGAC
CAGGCGGTGGCAAAAAGCACCTGTGGCAAGGGGGTGAGGCGACGGGTATA
CCGCAAAAATAGAAGATCTAAAAGCCGTGGGGTGGACTATACTCCGCAAG
ATGACTCCGGCTTGTGCAACGTCTGC
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