mRNA_H-paniculata_contig7641.15637.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7641.15637.1
Unique NamemRNA_H-paniculata_contig7641.15637.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: D8LI54_ECTSI (USP domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.090e-32
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV ESLEYFLKPEVLD DNQY CQ CDKKVDAVKGLKFERLPYLLSLQLKRFDFDY TFQRIKLN+E+
Sbjct:  273 MKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYDTFQRIKLNEEM 342
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BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A024U1I6_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1I6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.300e-26
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++EYFLKPEVL  +NQ++C  C KK DA+KGLKF +LPYLL+LQLKRFDFDYTTF RIKLN+EV
Sbjct:  229 MQSVEEAIEYFLKPEVLSGENQWDCSKCAKKQDAIKGLKFSKLPYLLALQLKRFDFDYTTFNRIKLNNEV 298
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BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A3R7A7E5_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A7E5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.300e-26
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++EYFLKPEVL  +NQ++C  C KK DA+KGLKF +LPYLL+LQLKRFDFDYTTF RIKLN+EV
Sbjct:  558 MQSVEEAIEYFLKPEVLSGENQWDCSKCAKKQDAIKGLKFSKLPYLLALQLKRFDFDYTTFNRIKLNNEV 627
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A6A5A6Q8_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6Q8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.460e-25
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++EYFLKPE+L  +NQ++C  C  K DA+KGLKF +LPY+L+LQLKRFDFDYTTF RIKLN++V
Sbjct:  144 MKSVEEAIEYFLKPEMLSGENQWDCARCGTKQDAIKGLKFSKLPYMLALQLKRFDFDYTTFNRIKLNNQV 213
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A1V9YR23_9STRA (USP domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR23_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.420e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++E+FLKPE+L  DNQ++C  C  K DAVKGLKF +LPYLLSLQLKRFDFDY TF RIKLN +V
Sbjct:  197 MRSVEEAVEFFLKPEMLSGDNQWDCDACKSKQDAVKGLKFAKLPYLLSLQLKRFDFDYATFNRIKLNSQV 266
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A485KBA5_9STRA (Aste57867_3392 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBA5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.430e-25
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++EYFLKPE+L  +NQ++C  C  K DA+KGLKF +LPYLL+LQLKRFDFDYTTF RIKLN++V
Sbjct:  229 MKSVEEAIEYFLKPEMLSGENQWDCARCAAKQDAIKGLKFSKLPYLLALQLKRFDFDYTTFNRIKLNNQV 298
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A1W0A035_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A035_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.430e-25
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++E+FLKPE L  DNQ++C  C  K DA+KGLKF +LPYLLSLQLKRFDFDYTTF RIKLN++V
Sbjct: 1044 MKSVEEAIEFFLKPEKLSGDNQWDCDKCKCKQDAIKGLKFSKLPYLLSLQLKRFDFDYTTFNRIKLNNQV 1113
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: T0PPB4_SAPDV (USP domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PPB4_SAPDV)

HSP 1 Score: 105 bits (261), Expect = 1.010e-24
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++E+FLKPE+L  DNQ++C  C  K DA+KGLKF +LPYLLSLQLKRFDFDY TF RIKLN++V
Sbjct:  210 MRSVEEAIEFFLKPEMLSGDNQWDCDKCASKQDAIKGLKFAKLPYLLSLQLKRFDFDYVTFNRIKLNNQV 279
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: W4GK16_9STRA (Ubiquitin carboxyl-terminal hydrolase 47 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GK16_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.010e-24
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++EYFLKPE+L  +NQ++C  C  K DA+KGLKF +LPY+L+LQLKRFDFDYTTF RIKLN++V
Sbjct:  231 MKSVEEAIEYFLKPEMLSGENQWDCARCGTKQDAIKGLKFSKLPYMLALQLKRFDFDYTTFNRIKLNNQV 300
[Close]
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Match: A0A6G0XHG1_9STRA (USP domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHG1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.380e-24
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQLKRFDFDYTTFQRIKLNDEV 210
            + SV E++E+FLKPE+L   NQ++C  C KK DA+KGLKF +LP LLSLQLKRFDFDYTTF RIKLN+EV
Sbjct:  226 MRSVEEAIEFFLKPEMLSEGNQWDCSKCAKKQDAIKGLKFNKLPDLLSLQLKRFDFDYTTFNRIKLNNEV 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7641.15637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI54_ECTSI1.090e-3287.14USP domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A024U1I6_9STRA1.300e-2671.43USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A3R7A7E5_9STRA1.300e-2671.43USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A6A5A6Q8_9STRA4.460e-2565.71USP domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A1V9YR23_9STRA7.420e-2568.57USP domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A485KBA5_9STRA7.430e-2567.14Aste57867_3392 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A035_9STRA7.430e-2568.57Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
T0PPB4_SAPDV1.010e-2467.14USP domain-containing protein n=2 Tax=Saprolegnia ... [more]
W4GK16_9STRA1.010e-2465.71Ubiquitin carboxyl-terminal hydrolase 47 n=13 Tax=... [more]
A0A6G0XHG1_9STRA1.380e-2468.57USP domain-containing protein n=2 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7641contigH-paniculata_contig7641:145..656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D8LI54
Preferred nameUSP47
KEGG koko:K11857
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000578,GO:0001558,GO:0001654,GO:0001745,GO:0003002,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008595,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010389,GO:0010466,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0010972,GO:0016579,GO:0016787,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0023051,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030307,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031461,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034644,GO:0035282,GO:0035520,GO:0036211,GO:0036459,GO:0040008,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042675,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045861,GO:0045892,GO:0045927,GO:0045930,GO:0045934,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0060828,GO:0060968,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071987,GO:0080090,GO:0080134,GO:0080135,GO:0090263,GO:0090304,GO:0090596,GO:0101005,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1901799,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902230,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902749,GO:1902750,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001020,GO:2001021,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.1230147-CDS-H-paniculata_contig7641:144..2611622930944.1230147-CDS-H-paniculata_contig7641:144..261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7641 145..261 -
1691481521.707073-CDS-H-paniculata_contig7641:144..2611691481521.707073-CDS-H-paniculata_contig7641:144..261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7641 145..261 -
1622930944.1433558-CDS-H-paniculata_contig7641:563..6561622930944.1433558-CDS-H-paniculata_contig7641:563..656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7641 564..656 -
1691481521.7227778-CDS-H-paniculata_contig7641:563..6561691481521.7227778-CDS-H-paniculata_contig7641:563..656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7641 564..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7641.15637.1prot_H-paniculata_contig7641.15637.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7641 145..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7641.15637.1

>prot_H-paniculata_contig7641.15637.1 ID=prot_H-paniculata_contig7641.15637.1|Name=mRNA_H-paniculata_contig7641.15637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
LTSVTESLEYFLKPEVLDHDNQYNCQTCDKKVDAVKGLKFERLPYLLSLQ
LKRFDFDYTTFQRIKLNDEV
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mRNA from alignment at H-paniculata_contig7641:145..656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7641.15637.1 ID=mRNA_H-paniculata_contig7641.15637.1|Name=mRNA_H-paniculata_contig7641.15637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=512bp|location=Sequence derived from alignment at H-paniculata_contig7641:145..656- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACATCCGTAACGGAGTCTTTGGAGTATTTCCTGAAGCCGGAGGTCCT
GGATCATGACAATCAGTACAATTGTCAGACCTGCGATAAGAAGGTACGTG
TATGCGGACGACCTGCACAATTTTTCGGTGTATAGTACTGCTACTTGGTA
GGGCCACGACTATGCCCGTAGCTAGTCCGTATTTTGTTTCCAATCCTGGA
CAATGACTCGCTGCGCTTGCTCGGAGATTCGTTTTTCATAACTCATTCGA
GTATACACTTGAAAATAGGTTTCGAAATAACGACATATTGCGGTATAGAA
AGTAATGGAGTAACTTGGTGAAAGAAGCATGGATGAATACAGGAACAAAA
TCTTCCCTTCCTCCCCCCCCCCCCCCCCCCTCCCCCGTCTTTCAGGTAGA
TGCCGTGAAGGGGCTTAAGTTCGAGCGCTTGCCATACCTGCTCTCGCTGC
AGCTGAAGCGATTCGACTTCGACTACACAACCTTCCAGCGAATCAAACTC
AACGACGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7641:145..656-

>mRNA_H-paniculata_contig7641.15637.1 ID=mRNA_H-paniculata_contig7641.15637.1|Name=mRNA_H-paniculata_contig7641.15637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig7641:145..656- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACATCCGTAACGGAGTCTTTGGAGTATTTCCTGAAGCCGGAGGTCCT
GGATCATGACAATCAGTACAATTGTCAGACCTGCGATAAGAAGTTGACAT
CCGTAACGGAGTCTTTGGAGTATTTCCTGAAGCCGGAGGTCCTGGATCAT
GACAATCAGTACAATTGTCAGACCTGCGATAAGAAGGTAGATGCCGTGAA
GGGGCTTAAGTTCGAGCGCTTGCCATACCTGCTCTCGCTGCAGCTGAAGC
GATTCGACTTCGACTACACAACCTTCCAGCGAATCAAACTCAACGACGAG
GTGGTAGATGCCGTGAAGGGGCTTAAGTTCGAGCGCTTGCCATACCTGCT
CTCGCTGCAGCTGAAGCGATTCGACTTCGACTACACAACCTTCCAGCGAA
TCAAACTCAACGACGAGGTG
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